Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Forward (+)

461913 .. 462895

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0005700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGAAAGGTGCTACTCATTGCCCTGCAGCTGCTGCTTTTGCCCTATTGGCATTGGCAACCTTCCACCTTGTCTCTGCCTTTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACCAACACTGATATTTCTGCTGTGTTTGTGAATGGGAGATTCTGCAAGGACCCAAAGATGGTAACACCAGAGGATTTCTTCTTTTCCGGGCTCCGGATGCGCGGAAACACATCAAATCCGCTTGGTTCCATCGTCACCCAGGCGAATGTGCAGCAAATAGCAGGACTGAACACTCTTGGGATATCCCTCGCTCGCATAGACTATGCACCTGGCGGACTAAACCCTCCTCACATCCACCCTCGGGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCAATGATAACGGCAACCGCCTCTTCAGCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCATTTGCTCAAATTCACTTCCAGCTCAACATCGGAAAGGTCAACGCCGTAGCCGTTTCCAGTCTTAGCAGCCAGTTTCCTGGTGTCACCACCATAGCCAAAGCAGTGTTCGGCTCCAACCCGTCAATCAACCCTGATGTTCTCACCAAGGCCTTCCAAGTTGACAAAAATGTCGTTCAGTATCTCCAGAACCAGTTCTGGTATGACAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

233

Amino Acids

25.25

Weight (kDa)

7.75

Isoelectric Point (pI)

23.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	72 - 222	4.1e-50	Cupin
Cupin_2	PF07883	108 - 180	6.5e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	4 cut(s)	228, 245, 339, 442
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	184, 219, 367
AjnI	CCWGG	3 cut(s)	264, 334, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	2 cut(s)	32, 511
AluI	AGCT	2 cut(s)	32, 511
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	366
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	2 cut(s)	369, 636
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 277, 555
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	175, 369
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	253, 565, 622
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	5 cut(s)	19, 22, 41, 289, 567
BccI	CCATC	2 cut(s)	178, 263
BceAI	ACGGC	3 cut(s)	451, 518, 524
BciT130I	CCWGG	3 cut(s)	266, 336, 567
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	30, 33, 36, 278, 556
BlsI	GCNGC	5 cut(s)	31, 34, 37, 279, 557
Bme1390I	CCNGG	4 cut(s)	214, 266, 336, 567
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	175, 369
BmiI	GGNNCC	4 cut(s)	177, 218, 253, 601
BmrFI	CCNGG	4 cut(s)	214, 266, 336, 567
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	4 cut(s)	264, 365, 372, 633
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 219, 367
Bse1I	ACTGG	3 cut(s)	546, 559, 679
Bse3DI	GCAATG	1 cut(s)	19
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	3 cut(s)	266, 336, 567
BseDI	CCNNGG	4 cut(s)	264, 365, 372, 633
BseGI	GGATG	3 cut(s)	228, 357, 422
BseLI	CCNNNNNNNGG	3 cut(s)	184, 219, 367
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	3 cut(s)	546, 559, 679
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	5 cut(s)	19, 22, 41, 289, 567
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	371, 638
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	213, 220
BslI	CCNNNNNNNGG	3 cut(s)	184, 219, 367
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	371, 638
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	4 cut(s)	228, 245, 339, 442
BspANI	GGCC	2 cut(s)	371, 638
BspEI	TCCGGA	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	4 cut(s)	177, 218, 253, 601
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	546, 559, 679
BssECI	CCNNGG	4 cut(s)	264, 365, 372, 633
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	3 cut(s)	266, 336, 567
Bst6I	CTCTTC	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	551
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	228, 357, 422
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 41, 50, 223, 450
BstNI	CCWGG	3 cut(s)	266, 336, 567
BstSCI	CCNGG	4 cut(s)	212, 264, 334, 565
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	19, 22, 41, 289, 567
BstV2I	GAAGAC	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	371, 638
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	228, 357, 422
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	132, 597
Cac8I	GCNNGC	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	175, 369
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	264, 334, 565
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	633
FaeI	CATG	1 cut(s)	394
FaiI	YATR	6 cut(s)	323, 330, 386, 392, 581, 690
FatI	CATG	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	30, 33, 36, 278, 556
FokI	GGATG	3 cut(s)	235, 344, 409
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	5 cut(s)	30, 33, 36, 278, 556
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	5 cut(s)	30, 33, 36, 278, 556
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	371, 638
HapII	CCGG	2 cut(s)	213, 220
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	2 cut(s)	529, 649
HindII	GTYRAC	2 cut(s)	529, 649
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	2 cut(s)	213, 220
HphI	GGTGA	3 cut(s)	253, 565, 622
Hpy166II	GTNNAC	2 cut(s)	529, 649
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	2 cut(s)	220, 673
Hpy8I	GTNNAC	2 cut(s)	529, 649
HpyAV	CCTTC	3 cut(s)	73, 389, 649
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	4 cut(s)	29, 171, 277, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 41, 50, 223, 450
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	222, 605
Lsp1109I	GCAGC	5 cut(s)	19, 22, 41, 289, 567
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	4 cut(s)	187, 259, 418, 571
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	196, 439, 475
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	498, 697
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	7 cut(s)	105, 190, 323, 360, 363, 375, 455
MroI	TCCGGA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	2 cut(s)	120, 700
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	213, 220
MspR9I	CCNGG	4 cut(s)	214, 266, 336, 567
MvaI	CCWGG	3 cut(s)	266, 336, 567
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	5 cut(s)	35, 41, 50, 223, 450
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	4 cut(s)	177, 218, 253, 601
NmuCI	GTSAC	3 cut(s)	259, 418, 571
PceI	AGGCCT	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	2 cut(s)	414, 537
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	31, 34, 37, 279, 557
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	3 cut(s)	264, 334, 565
PspGI	CCWGG	3 cut(s)	264, 334, 565
PspN4I	GGNNCC	4 cut(s)	177, 218, 253, 601
PspPI	GGNCC	2 cut(s)	175, 369
PspPPI	RGGWCCY	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	2 cut(s)	120, 700
SatI	GCNGC	5 cut(s)	30, 33, 36, 278, 556
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	2 cut(s)	175, 369
ScrFI	CCNGG	4 cut(s)	214, 266, 336, 567
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	13, 34, 65, 72, 337, 411, 513, 528
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	498, 697
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	4 cut(s)	228, 245, 339, 442
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	4 cut(s)	212, 264, 334, 565
StyI	CCWWGG	1 cut(s)	633
TaiI	ACGT	1 cut(s)	411
TasI	AATT	2 cut(s)	498, 697
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	120, 700
Tru9I	TTAA	2 cut(s)	120, 700
TscAI	CASTG	2 cut(s)	139, 597
TseFI	GTSAC	3 cut(s)	259, 418, 571
TseI	GCWGC	5 cut(s)	29, 32, 35, 277, 555
Tsp45I	GTSAC	3 cut(s)	259, 418, 571
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	139, 597
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.