RchiOBHm_Chr3g0451231

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001710
Physical Location & Seq
Reverse (-)
2399677 .. 2401199
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41852

Sequence Viewer

Length: 693 bp
ATGTCGATGTCGAAGAGCTCCAAGATGCTCCAGTTCATCAACTACCGCATGAGAGTGACGATCCAGGACGGCCGTCAGCTCGTCGGAAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGGAAGCTTCCTCCGGCCAAAGGCGCCGCCGCCAAGAAGAACACCAACACCAACGAGGACCGCGACGACCGCCGCACTCTCGGCCTCGTCCTCCTCCGCGGCGAGGAGGTCATCTCCATGACCGTCGAGGGCCCGCCGCCTCAGGAGGAGTCACGCGCCAAGGCCGCGAGTGCCGCTGCTCTTTCTGGCTCCGGAATCGGACGCGCCGCCGGCAGGGGGATCGTAACTCCTCCCGTGGCCCAGGCCCAGCCCGGTCTCTCCGGCCCCGTCCGCGGCGTCGGCGGGCCCGCCCCCGGCATGATGCAACCTCAGATGTCTCGCCCTAACCTCTCGGCGCCTCCGATGACGTATCCGGCTGCTCCGGTGATCCGCCCCCGCCGCAGATGTATCCCGGCCAGGGACCACCACCGATGGTGCGTGGCCCGCCGCCGCAGTTTCCTCCTCCCGGTGCTAGGCCCGGCGGTCCACCTCAGCAGTTTCCCGGTCCTCCGATGCAGTATGGGCAGAGACCAATGGGGCCTCCACCGCCGGGGCCTCCGGGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

230

Amino Acids

25.16

Weight (kDa)

11.45

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 89 1.9e-16 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 167, 478
AccII CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
AccIII TCCGGA 2 cut(s) 144, 335
AclWI GGATC 3 cut(s) 55, 371, 505
AcoI YGGCCR 3 cut(s) 70, 159, 537
AcyI GRCGYC 3 cut(s) 168, 420, 479
AjnI CCWGG 3 cut(s) 63, 384, 539
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 3 cut(s) 404, 465, 645
AlwI GGATC 3 cut(s) 55, 371, 505
Aor13HI TCCGGA 2 cut(s) 144, 335
ApaI GGGCCC 2 cut(s) 278, 432
ApeKI GCWGC 2 cut(s) 320, 500
AspLEI GCGC 4 cut(s) 170, 302, 350, 481
AsuC2I CCSGG 8 cut(s) 396, 438, 536, 590, 602, 626, 674, 683
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 4 cut(s) 202, 544, 607, 628
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 2 cut(s) 278, 432
BanI GGYRCC 2 cut(s) 167, 478
BanII GRGCYC 3 cut(s) 20, 278, 432
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 614
BbvI GCAGC 2 cut(s) 307, 487
BccI CCATC 1 cut(s) 549
BceAI ACGGC 2 cut(s) 57, 85
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 3 cut(s) 65, 386, 541
BciVI GTATCC 2 cut(s) 504, 542
BcnI CCSGG 8 cut(s) 396, 438, 536, 590, 602, 626, 674, 683
BcoDI GTCTC 3 cut(s) 404, 465, 645
BfaI CTAG 1 cut(s) 596
BfoI RGCGCY 2 cut(s) 171, 482
BfuI GTATCC 2 cut(s) 504, 542
BglI GCCNNNNNGGC 1 cut(s) 684
Bme18I GGWCC 4 cut(s) 202, 544, 607, 628
BmiI GGNNCC 9 cut(s) 169, 276, 334, 409, 430, 480, 545, 662, 677
BmsI GCATC 3 cut(s) 15, 435, 626
BoxI GACNNNNGTC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 614
BpuMI CCSGG 8 cut(s) 396, 438, 536, 590, 602, 626, 674, 683
BsaHI GRCGYC 3 cut(s) 168, 420, 479
BsaI GGTCTC 2 cut(s) 404, 645
BsaWI WCCGGW 3 cut(s) 144, 335, 505
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 285
BseAI TCCGGA 2 cut(s) 144, 335
BseBI CCWGG 3 cut(s) 65, 386, 541
BseMII CTCAG 3 cut(s) 299, 467, 628
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 6 cut(s) 152, 227, 263, 305, 363, 575
BseSI GKGCMC 2 cut(s) 278, 432
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 307, 487
BseYI CCCAGC 1 cut(s) 390
Bsh1236I CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
Bsh1285I CGRYCG 3 cut(s) 73, 106, 214
BshNI GGYRCC 2 cut(s) 167, 478
BsiEI CGRYCG 3 cut(s) 73, 106, 214
BsiHKAI GWGCWC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 3 cut(s) 404, 465, 645
BsmFI GGGAC 1 cut(s) 557
Bso31I GGTCTC 2 cut(s) 404, 645
Bsp120I GGGCCC 2 cut(s) 274, 428
Bsp1286I GDGCHC 3 cut(s) 20, 278, 432
Bsp13I TCCGGA 2 cut(s) 144, 335
Bsp143I GATC 3 cut(s) 60, 363, 510
BspCNI CTCAG 3 cut(s) 298, 466, 627
BspEI TCCGGA 2 cut(s) 144, 335
BspFNI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
BspLI GGNNCC 9 cut(s) 169, 276, 334, 409, 430, 480, 545, 662, 677
BspPI GGATC 3 cut(s) 55, 371, 505
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 167, 478
BspTNI GGTCTC 2 cut(s) 404, 645
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 353
BssMI GATC 3 cut(s) 60, 363, 510
BssNI GRCGYC 3 cut(s) 168, 420, 479
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 3 cut(s) 65, 386, 541
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 3 cut(s) 168, 420, 479
BstC8I GCNNGC 5 cut(s) 278, 355, 428, 432, 568
BstDEI CTNAG 3 cut(s) 285, 453, 614
BstDSI CCRYGG 3 cut(s) 241, 378, 415
BstFNI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
BstH2I RGCGCY 2 cut(s) 171, 482
BstHHI GCGC 4 cut(s) 170, 302, 350, 481
BstKTI GATC 3 cut(s) 63, 366, 513
BstMAI GTCTC 3 cut(s) 404, 465, 645
BstMBI GATC 3 cut(s) 60, 363, 510
BstMCI CGRYCG 3 cut(s) 73, 106, 214
BstNI CCWGG 3 cut(s) 65, 386, 541
BstPAI GACNNNNGTC 1 cut(s) 72
BstSLI GKGCMC 2 cut(s) 278, 432
BstUI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
BstV1I GCAGC 2 cut(s) 307, 487
BstZI CGGCCG 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 2 cut(s) 504, 542
BtgI CCRYGG 3 cut(s) 241, 378, 415
Cac8I GCNNGC 5 cut(s) 278, 355, 428, 432, 568
CfoI GCGC 4 cut(s) 170, 302, 350, 481
Cfr10I RCCGGY 1 cut(s) 353
Cfr42I CCGCGG 2 cut(s) 244, 418
CseI GACGC 2 cut(s) 354, 409
CviAII CATG 5 cut(s) 49, 94, 112, 262, 442
DdeI CTNAG 3 cut(s) 285, 453, 614
DinI GGCGCC 2 cut(s) 169, 480
DpnI GATC 3 cut(s) 62, 365, 512
DpnII GATC 3 cut(s) 60, 363, 510
EaeI YGGCCR 3 cut(s) 70, 159, 537
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 503
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 3 cut(s) 20, 278, 432
Eco31I GGTCTC 2 cut(s) 404, 645
Eco47I GGWCC 4 cut(s) 202, 544, 607, 628
Eco52I CGGCCG 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 3 cut(s) 274, 661, 676
EcoRII CCWGG 3 cut(s) 63, 384, 539
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 3 cut(s) 20, 278, 432
EgeI GGCGCC 2 cut(s) 169, 480
EheI GGCGCC 2 cut(s) 169, 480
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 5 cut(s) 52, 97, 115, 265, 445
FaiI YATR 6 cut(s) 50, 95, 113, 263, 443, 644
FaqI GGGAC 1 cut(s) 557
FatI CATG 5 cut(s) 48, 93, 111, 261, 441
FauI CCCGC 5 cut(s) 285, 419, 439, 527, 575
FriOI GRGCYC 3 cut(s) 20, 278, 432
FspBI CTAG 1 cut(s) 596
GlaI GCGC 4 cut(s) 169, 301, 349, 480
GsaI CCCAGC 1 cut(s) 394
GsuI CTGGAG 1 cut(s) 14
HaeII RGCGCY 2 cut(s) 171, 482
HgaI GACGC 2 cut(s) 354, 409
HhaI GCGC 4 cut(s) 170, 302, 350, 481
Hin1I GRCGYC 3 cut(s) 168, 420, 479
Hin1II CATG 5 cut(s) 52, 97, 115, 265, 445
Hin6I GCGC 4 cut(s) 168, 300, 348, 479
HinP1I GCGC 4 cut(s) 168, 300, 348, 479
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 293, 339
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 5 cut(s) 86, 344, 456, 486, 635
Hpy188III TCNNGA 3 cut(s) 145, 287, 336
Hpy8I GTNNAC 1 cut(s) 610
Hpy99I CGWCG 4 cut(s) 86, 212, 272, 425
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 2 cut(s) 448, 639
HpyF3I CTNAG 3 cut(s) 285, 453, 614
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 3 cut(s) 168, 420, 479
Hsp92II CATG 5 cut(s) 52, 97, 115, 265, 445
HspAI GCGC 4 cut(s) 168, 300, 348, 479
KasI GGCGCC 2 cut(s) 167, 478
Kpn2I TCCGGA 2 cut(s) 144, 335
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
KspI CCGCGG 2 cut(s) 244, 418
Kzo9I GATC 3 cut(s) 60, 363, 510
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 23, 33, 338, 508
Lsp1109I GCAGC 2 cut(s) 307, 487
LweI GCATC 3 cut(s) 15, 435, 626
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 3 cut(s) 55, 294, 367
MalI GATC 3 cut(s) 62, 365, 512
MboI GATC 3 cut(s) 60, 363, 510
MboII GAAGA 2 cut(s) 25, 193
MhlI GDGCHC 3 cut(s) 20, 278, 432
Mly113I GGCGCC 2 cut(s) 168, 479
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 64
MroI TCCGGA 2 cut(s) 144, 335
MroNI GCCGGC 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 53, 260
MspA1I CMGCKG 3 cut(s) 243, 320, 417
MvaI CCWGG 3 cut(s) 65, 386, 541
MvnI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
NaeI GCCGGC 1 cut(s) 355
NarI GGCGCC 2 cut(s) 168, 479
NciI CCSGG 8 cut(s) 396, 438, 536, 590, 602, 626, 674, 683
NdeII GATC 3 cut(s) 60, 363, 510
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 5 cut(s) 52, 97, 115, 265, 445
NlaIV GGNNCC 9 cut(s) 169, 276, 334, 409, 430, 480, 545, 662, 677
NmeAIII GCCGAG 3 cut(s) 105, 204, 455
NmuCI GTSAC 2 cut(s) 55, 294
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 132, 204, 482
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 63
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 2 cut(s) 171, 482
PpsI GAGTC 1 cut(s) 301
PshAI GACNNNNGTC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 3 cut(s) 63, 384, 539
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 3 cut(s) 63, 384, 539
PspN4I GGNNCC 9 cut(s) 169, 276, 334, 409, 430, 480, 545, 662, 677
PspOMI GGGCCC 2 cut(s) 274, 428
RseI CAYNNNNRTG 2 cut(s) 53, 260
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 2 cut(s) 244, 418
SapI GCTCTTC 1 cut(s) 8
Sau3AI GATC 3 cut(s) 60, 363, 510
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 3 cut(s) 20, 278, 432
SetI ASST 9 cut(s) 20, 81, 120, 153, 255, 454, 474, 494, 615
SfaNI GCATC 3 cut(s) 15, 435, 626
SfoI GGCGCC 2 cut(s) 169, 480
Sfr303I CCGCGG 2 cut(s) 244, 418
SgrBI CCGCGG 2 cut(s) 244, 418
SinI GGWCC 4 cut(s) 202, 544, 607, 628
SmiMI CAYNNNNRTG 2 cut(s) 53, 260
SspDI GGCGCC 2 cut(s) 167, 478
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 494
TaqI TCGA 4 cut(s) 5, 11, 102, 270
TfiI GAWTC 1 cut(s) 339
TseFI GTSAC 2 cut(s) 55, 294
TseI GCWGC 2 cut(s) 320, 500
Tsp45I GTSAC 2 cut(s) 55, 294
TspDTI ATGAA 3 cut(s) 25, 82, 128
VpaK11BI GGWCC 4 cut(s) 202, 544, 607, 628
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.