FvH4_5g08241

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
4787901 .. 4791028
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08241.t1

Sequence Viewer

Length: 1863 bp
ATGGCCTTCTTCTTCTTCCTCCTCAAAGCTGCAGTGCTACTGGTTTTCTTAGGTCATTTCACAGTAGCTCATAATATCAAGCAGAAACTACATGCAGGTGATGGTGATGGGGTGCAGCCACTCTCTAAGATTCAAATCCATTTAGCAGTCGCTAACTTTCACGAAAATGCTTCCGTCTCTGCGTACCCTGTTCTTCTCGGCACCAAGGGAGAAGATTTTGGGTGGGTAACAGTGACAGTTTCTTGTCCTAATCCTGCACAAGATGATTGGGTTGCAGTTTTTTCTCCTGCAGATTTCAATGGATCCACCTGTCCAAACAATGAAGATGTCTATAAGTATTATGAGCCGTATATATGCACAGCTCCTATAAAGTTCAAGTTAGCCAATTATTCCAATGCCAATTACGCAACCACTGGCCATTCAACTTTGAAGTTCCGGTTGATCAATCAACGGGCAGATTTTTCGTTTGCATTGTTCTCCGGCGGCCTGTCAAATCCGAAATTGGTGGCAGTTTCAAATAAGGTGACATTTGCCTATCCGAAGGCTCCCCTGTACCCGCGTCTTGCTCTAGGGAAGCTTTGGGATGAAATGACAGTGACTTGGACAAGTGGCTATAACATCGATGAAGCTGTACCTTTAGTTGCTTGGGGGTTGAAGGGAGATCGTCAAACTCACCGATCTCCAGCAGGAACATTGACTTTCAGTCGACGGGACATGTGTGTTGGTTGGCGTGATCCCGGTTTCATCCATACAAGTTTTCTAAAAGATTTGTGGCCAAATTCAGTGTACTCTTACAAGCTTGGTCATCGGTTATCTAATGGTTCCTATATCTGGAGCAAGGCTTATTCTTTCAAGTCAGCACCATATCCTGGGCAGGAGTCATTGCAGCGAGTTATCATATTTGGTGACATGGGAAAGGCTGAGCGTGATGGTTCAAATGAATATGCTAATTATCAGCCCGGCTCACTCAACACCACAGATCAGCTAATCAAGGACTTGGACAACATTGACATAGTTTTTCACATAGGAGATCTTCCTTATGCCAACGGATACATCTCACAGTGGGATCAGTTCACATCACAGGTGGAGCCGATTTCATCAGTTGTACCATATATGGTTGCAAGTGGCAACCATGAACGAGCTTCAACAGGGACTGGATCCTTCTACGACACTAATGATTCAGGTGGTGAATGTGGCGTGCCAGCTGAGACCATGTATTACGTTCCTGCTGAGAACAGAGCTAAATTCTGGTATGCAACAGATTATGGAATGTTCCACTTCTGTATAGCTGACACTGAGCATGACTGGAGAGAAGGTTCCGAGCAGTACAAATTTATTGAGAAATGCTTTGCATCTGCTAACAGACACAAGCAACCTTGGCTGATATTTGCTGCTCATCGTGTTCTCGGTTATTCCTCTGACACTTGGTATGTAGATGAGGGTTCATTTGAAGAGCCGATGGGAAGGGATGACATGCAAAAGCTTTGGCAAAGATACAAAGTGGATATTGCATTTTACGGCCATGTCCATAACTACGAAAGAATATGCCCCATCTATCAGAACCAGTGTGTAAATTCAGAAATATCTAACTACTCAGGAACTGTCAACGGAACAATCCATGTTGTAGTTGGCGGAGCAGGCAGCCATTTATCAGACTTTACCTCGGTGAAGACAGCTTGGAGCATTTACCAAGATCGAGACTTTGGTTATACGAAACTCACAGCGTATAACCACTCATCGCTGCTCTTCGAGTACATGAAGAGCAGTGATGGGAAGGTCTATGCATTCACCATCTCCAGGGACTACAAGGATGTCTTGGCCTGTGTTCATGATGGTTGTGAACCAACCACCTTAGCTATATGA

Protein Analysis

621

Amino Acids

69.73

Weight (kDa)

5.95

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_PAP PF17808 59 - 178 1.8e-44 Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N PF16656 186 - 285 1.7e-13 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 297 - 512 9.5e-17 Calcineurin-like phosphoesterase
Metallophos_C PF14008 537 - 594 4e-15 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 869
AccI GTMKAC 1 cut(s) 706
AccII CGCG 1 cut(s) 559
AciI CCGC 3 cut(s) 483, 557, 1632
AclWI GGATC 6 cut(s) 297, 310, 728, 1074, 1152, 1165
AcoI YGGCCR 3 cut(s) 415, 773, 1519
AcsI RAATTY 4 cut(s) 778, 1244, 1331, 1573
AfaI GTAC 7 cut(s) 185, 554, 633, 788, 1107, 1328, 1754
AfiI CCNNNNNNNGG 3 cut(s) 831, 869, 1797
AflIII ACRYGT 1 cut(s) 714
AhdI GACNNNNNGTC 1 cut(s) 702
AjnI CCWGG 2 cut(s) 868, 1796
AloI GAACNNNNNNTCC 2 cut(s) 1300, 1332
Alw26I GTCTC 3 cut(s) 181, 1202, 1692
AlwI GGATC 6 cut(s) 297, 310, 728, 1074, 1152, 1165
AlwNI CAGNNNCTG 2 cut(s) 1154, 1601
AoxI GGCC 6 cut(s) 3, 415, 484, 773, 1519, 1818
ApeKI GCWGC 6 cut(s) 29, 115, 886, 1391, 1641, 1741
ApoI RAATTY 4 cut(s) 778, 1244, 1331, 1573
AsuC2I CCSGG 2 cut(s) 738, 960
AsuHPI GGTGA 8 cut(s) 110, 116, 535, 665, 917, 1199, 1678, 1780
BalI TGGCCA 2 cut(s) 417, 775
BamHI GGATCC 2 cut(s) 302, 1157
BanI GGYRCC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 1676
BbvI GCAGC 6 cut(s) 16, 127, 898, 1378, 1653, 1728
BccI CCATC 8 cut(s) 95, 101, 923, 1453, 1559, 1763, 1799, 1826
BceAI ACGGC 2 cut(s) 331, 1534
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 2 cut(s) 870, 1798
BciVI GTATCC 1 cut(s) 1043
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 2 cut(s) 738, 960
BcoDI GTCTC 3 cut(s) 181, 1202, 1692
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 2 cut(s) 30, 288
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 1 cut(s) 1043
BglII AGATCT 1 cut(s) 1030
BisI GCNGC 7 cut(s) 30, 116, 484, 887, 1392, 1642, 1742
BlpI GCTNAGC 1 cut(s) 921
BlsI GCNGC 7 cut(s) 31, 117, 485, 888, 1393, 1643, 1743
Bme1390I CCNGG 4 cut(s) 738, 870, 960, 1798
BmeRI GACNNNNNGTC 1 cut(s) 702
BmiI GGNNCC 7 cut(s) 202, 304, 546, 823, 1089, 1159, 1318
BmrFI CCNGG 4 cut(s) 738, 870, 960, 1798
BmsI GCATC 1 cut(s) 1361
BpiI GAAGAC 1 cut(s) 1676
BpmI CTGGAG 4 cut(s) 666, 853, 1327, 1780
Bpu10I CCTNAGC 1 cut(s) 1852
Bpu1102I GCTNAGC 1 cut(s) 921
BpuMI CCSGG 2 cut(s) 738, 960
Bsa29I ATCGAT 1 cut(s) 621
BsaBI GATNNNNATC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 1202
BsaJI CCNNGG 5 cut(s) 204, 869, 1376, 1662, 1797
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 1300, 1330
Bsc4I CCNNNNNNNGG 3 cut(s) 831, 869, 1797
Bse1I ACTGG 5 cut(s) 45, 418, 1159, 1310, 1564
Bse3DI GCAATG 1 cut(s) 881
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 2 cut(s) 870, 1798
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 5 cut(s) 204, 869, 1376, 1662, 1797
BseGI GGATG 4 cut(s) 589, 744, 1474, 1816
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 831, 869, 1797
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 5 cut(s) 912, 1197, 1221, 1287, 1608
BseNI ACTGG 5 cut(s) 45, 418, 1159, 1310, 1564
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 6 cut(s) 16, 127, 898, 1378, 1653, 1728
BsgI GTGCAG 2 cut(s) 134, 240
Bsh1236I CGCG 1 cut(s) 559
BshFI GGCC 6 cut(s) 5, 417, 486, 775, 1521, 1820
BshNI GGYRCC 1 cut(s) 200
BshVI ATCGAT 1 cut(s) 621
BsiSI CCGG 4 cut(s) 436, 480, 738, 960
BslFI GGGAC 3 cut(s) 725, 1165, 1814
BslI CCNNNNNNNGG 3 cut(s) 831, 869, 1797
BsmAI GTCTC 3 cut(s) 181, 1202, 1692
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 725, 1165, 1814
BsmI GAATGC 1 cut(s) 1784
BsnI GGCC 6 cut(s) 5, 417, 486, 775, 1521, 1820
Bso31I GGTCTC 1 cut(s) 1202
Bsp1720I GCTNAGC 1 cut(s) 921
BspACI CCGC 3 cut(s) 483, 557, 1632
BspANI GGCC 6 cut(s) 5, 417, 486, 775, 1521, 1820
BspCNI CTCAG 5 cut(s) 913, 1198, 1222, 1288, 1607
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 1 cut(s) 559
BspHI TCATGA 1 cut(s) 1828
BspLI GGNNCC 7 cut(s) 202, 304, 546, 823, 1089, 1159, 1318
BspMAI CTGCAG 2 cut(s) 34, 292
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 6 cut(s) 297, 310, 728, 1074, 1152, 1165
BspQI GCTCTTC 3 cut(s) 1446, 1751, 1754
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 1202
BsrDI GCAATG 1 cut(s) 881
BsrI ACTGG 5 cut(s) 45, 418, 1159, 1310, 1564
BssECI CCNNGG 5 cut(s) 204, 869, 1376, 1662, 1797
BssT1I CCWWGG 2 cut(s) 204, 1376
Bst2UI CCWGG 2 cut(s) 870, 1798
Bst4CI ACNGT 6 cut(s) 64, 232, 238, 595, 1062, 1603
Bst6I CTCTTC 3 cut(s) 1446, 1751, 1754
BstC8I GCNNGC 3 cut(s) 1199, 1203, 1639
BstDEI CTNAG 8 cut(s) 49, 126, 921, 1206, 1230, 1296, 1594, 1852
BstF5I GGATG 4 cut(s) 589, 744, 1474, 1816
BstFNI CGCG 1 cut(s) 559
BstMAI GTCTC 3 cut(s) 181, 1202, 1692
BstMWI GCNNNNNNNGC 3 cut(s) 404, 1378, 1638
BstNI CCWGG 2 cut(s) 870, 1798
BstNSI RCATGY 3 cut(s) 95, 718, 1477
BstSCI CCNGG 4 cut(s) 736, 868, 958, 1796
BstSFI CTRYAG 2 cut(s) 30, 288
BstUI CGCG 1 cut(s) 559
BstV1I GCAGC 6 cut(s) 16, 127, 898, 1378, 1653, 1728
BstV2I GAAGAC 1 cut(s) 1676
BstX2I RGATCY 3 cut(s) 302, 1030, 1157
BstYI RGATCY 3 cut(s) 302, 1030, 1157
Bsu15I ATCGAT 1 cut(s) 621
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 6 cut(s) 5, 417, 486, 775, 1521, 1820
BsuTUI ATCGAT 1 cut(s) 621
BtgZI GCGATG 1 cut(s) 1722
BtsCI GGATG 4 cut(s) 589, 744, 1474, 1816
BtsI GCAGTG 2 cut(s) 39, 1771
BtsIMutI CAGTG 9 cut(s) 39, 237, 411, 600, 789, 1067, 1293, 1571, 1771
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 1199, 1203, 1639
CaiI CAGNNNCTG 2 cut(s) 1154, 1601
CciI TCATGA 1 cut(s) 1828
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 1 cut(s) 548
Csp6I GTAC 7 cut(s) 184, 553, 632, 787, 1106, 1327, 1753
CviQI GTAC 7 cut(s) 184, 553, 632, 787, 1106, 1327, 1753
DdeI CTNAG 8 cut(s) 49, 126, 921, 1206, 1230, 1296, 1594, 1852
DriI GACNNNNNGTC 1 cut(s) 702
EaeI YGGCCR 3 cut(s) 415, 773, 1519
Eam1104I CTCTTC 3 cut(s) 1446, 1751, 1754
Eam1105I GACNNNNNGTC 1 cut(s) 702
EarI CTCTTC 3 cut(s) 1446, 1751, 1754
EciI GGCGGA 1 cut(s) 1647
Eco130I CCWWGG 2 cut(s) 204, 1376
Eco31I GGTCTC 1 cut(s) 1202
EcoRII CCWGG 2 cut(s) 868, 1796
EcoT14I CCWWGG 2 cut(s) 204, 1376
EcoT22I ATGCAT 1 cut(s) 1786
ErhI CCWWGG 2 cut(s) 204, 1376
Esp3I CGTCTC 1 cut(s) 181
FalI AAGNNNNNCTT 2 cut(s) 1799, 1831
FaqI GGGAC 3 cut(s) 725, 1165, 1814
FauI CCCGC 1 cut(s) 564
FbaI TGATCA 1 cut(s) 441
FblI GTMKAC 1 cut(s) 706
Fnu4HI GCNGC 7 cut(s) 30, 116, 484, 887, 1392, 1642, 1742
FokI GGATG 4 cut(s) 596, 731, 1481, 1823
Fsp4HI GCNGC 7 cut(s) 30, 116, 484, 887, 1392, 1642, 1742
FspBI CTAG 1 cut(s) 569
GluI GCNGC 7 cut(s) 30, 116, 484, 887, 1392, 1642, 1742
GsuI CTGGAG 4 cut(s) 666, 853, 1327, 1780
HaeIII GGCC 6 cut(s) 5, 417, 486, 775, 1521, 1820
HapII CCGG 4 cut(s) 436, 480, 738, 960
HgaI GACGC 1 cut(s) 548
HincII GTYRAC 2 cut(s) 707, 1606
HindII GTYRAC 2 cut(s) 707, 1606
HindIII AAGCTT 3 cut(s) 575, 797, 1481
HinfI GANTC 3 cut(s) 130, 878, 1178
HpaII CCGG 4 cut(s) 436, 480, 738, 960
HphI GGTGA 8 cut(s) 110, 116, 535, 665, 917, 1199, 1678, 1780
Hpy166II GTNNAC 5 cut(s) 707, 787, 1074, 1606, 1841
Hpy188I TCNGA 7 cut(s) 498, 540, 1321, 1420, 1560, 1579, 1654
Hpy188III TCNNGA 5 cut(s) 161, 832, 1596, 1697, 1829
Hpy8I GTNNAC 5 cut(s) 707, 787, 1074, 1606, 1841
Hpy99I CGWCG 1 cut(s) 711
HpyAV CCTTC 7 cut(s) 16, 535, 649, 1171, 1307, 1458, 1768
HpyCH4III ACNGT 6 cut(s) 64, 232, 238, 595, 1062, 1603
HpyCH4IV ACGT 1 cut(s) 1221
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 1378, 1638
HpyF3I CTNAG 8 cut(s) 49, 126, 921, 1206, 1230, 1296, 1594, 1852
HpySE526I ACGT 1 cut(s) 1221
Ksp22I TGATCA 1 cut(s) 441
LguI GCTCTTC 3 cut(s) 1446, 1751, 1754
LmnI GCTCC 6 cut(s) 367, 550, 834, 1087, 1634, 1680
Lsp1109I GCAGC 6 cut(s) 16, 127, 898, 1378, 1653, 1728
LweI GCATC 1 cut(s) 1361
MaeI CTAG 1 cut(s) 569
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 5 cut(s) 226, 232, 523, 595, 905
MflI RGATCY 3 cut(s) 302, 1030, 1157
MlsI TGGCCA 2 cut(s) 417, 775
MluCI AATT 8 cut(s) 385, 400, 500, 778, 949, 1244, 1331, 1573
MluNI TGGCCA 2 cut(s) 417, 775
MlyI GAGTC 1 cut(s) 887
MnlI CCTC 5 cut(s) 29, 32, 1426, 1432, 1672
Mox20I TGGCCA 2 cut(s) 417, 775
Mph1103I ATGCAT 1 cut(s) 1786
MscI TGGCCA 2 cut(s) 417, 775
MslI CAYNNNNRTG 2 cut(s) 96, 165
Msp20I TGGCCA 2 cut(s) 417, 775
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 4 cut(s) 436, 480, 738, 960
MspR9I CCNGG 4 cut(s) 738, 870, 960, 1798
Mva1269I GAATGC 1 cut(s) 1784
MvaI CCWGG 2 cut(s) 870, 1798
MvnI CGCG 1 cut(s) 559
MwoI GCNNNNNNNGC 3 cut(s) 404, 1378, 1638
NciI CCSGG 2 cut(s) 738, 960
NlaIV GGNNCC 7 cut(s) 202, 304, 546, 823, 1089, 1159, 1318
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 4 cut(s) 232, 523, 595, 905
NsiI ATGCAT 1 cut(s) 1786
NspI RCATGY 3 cut(s) 95, 718, 1477
PagI TCATGA 1 cut(s) 1828
PaqCI CACCTGC 1 cut(s) 86
PciI ACATGT 1 cut(s) 714
PciSI GCTCTTC 3 cut(s) 1446, 1751, 1754
PctI GAATGC 1 cut(s) 1784
PfeI GAWTC 2 cut(s) 130, 1178
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 7 cut(s) 31, 117, 485, 888, 1393, 1643, 1743
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PscI ACATGT 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 868, 1796
PspGI CCWGG 2 cut(s) 868, 1796
PspN4I GGNNCC 7 cut(s) 202, 304, 546, 823, 1089, 1159, 1318
PstI CTGCAG 2 cut(s) 34, 292
PstNI CAGNNNCTG 2 cut(s) 1154, 1601
PsuI RGATCY 3 cut(s) 302, 1030, 1157
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 7 cut(s) 185, 554, 633, 788, 1107, 1328, 1754
RsaNI GTAC 7 cut(s) 184, 553, 632, 787, 1106, 1327, 1753
RseI CAYNNNNRTG 2 cut(s) 96, 165
SalI GTCGAC 1 cut(s) 705
SapI GCTCTTC 3 cut(s) 1446, 1751, 1754
SatI GCNGC 7 cut(s) 30, 116, 484, 887, 1392, 1642, 1742
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 4 cut(s) 738, 870, 960, 1798
SfaNI GCATC 1 cut(s) 1361
SfcI CTRYAG 2 cut(s) 30, 288
SmiMI CAYNNNNRTG 2 cut(s) 96, 165
Sse9I AATT 8 cut(s) 385, 400, 500, 778, 949, 1244, 1331, 1573
SsiI CCGC 3 cut(s) 483, 557, 1632
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 4 cut(s) 736, 868, 958, 1796
StyI CCWWGG 2 cut(s) 204, 1376
TaaI ACNGT 6 cut(s) 64, 232, 238, 595, 1062, 1603
TaiI ACGT 1 cut(s) 1224
TaqI TCGA 4 cut(s) 621, 706, 1696, 1749
TasI AATT 8 cut(s) 385, 400, 500, 778, 949, 1244, 1331, 1573
TatI WGTACW 3 cut(s) 786, 1326, 1752
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 2 cut(s) 130, 1178
TscAI CASTG 9 cut(s) 39, 237, 418, 600, 789, 1067, 1300, 1571, 1771
TseFI GTSAC 4 cut(s) 232, 523, 595, 905
TseI GCWGC 6 cut(s) 29, 115, 886, 1391, 1641, 1741
Tsp45I GTSAC 4 cut(s) 232, 523, 595, 905
TspGWI ACGGA 3 cut(s) 163, 1062, 1623
TspRI CASTG 9 cut(s) 39, 237, 418, 600, 789, 1067, 1300, 1571, 1771
Van91I CCANNNNNTGG 1 cut(s) 869
XapI RAATTY 4 cut(s) 778, 1244, 1331, 1573
XceI RCATGY 3 cut(s) 95, 718, 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 1625
XmiI GTMKAC 1 cut(s) 706
XspI CTAG 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 1786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.