Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001351

Physical Location & Seq

Genomic Coordinates Reverse (-)

61772165 .. 61781717

Gene Structure 9553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0503400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGGCGGTTCAGTTCAAATTCCGAAGCTCTGCGAAATTCGATTCCGTCGACCTCGAAGGTCGAGCCTCAATCCCCGTTCGTGATCTCAAAGCCAAAATCATCCGCCACAACAACCTCAACATCTGTCAAGATTCCGATCTCGTCTTCTCCGACGCCATAACCGGTCAAGAGTACACTAACGAGAATATTCAAATTCCGTGCGGCTCGTCCGTGATTATCAAGAGAGTTCCTGCAGGATCGGCACATGTGGATATGCCTCACTTCAACTGCAAGGAAGCTGGGAATCCGCCGAATGTTGAGACAGTCGACTTTGATGACTTTGGGGTTGACGTGTATCCCGTTCCCGAGGCGACCTTCGTCTGTTCTGACAAGGATGCCCGCAGTCGGGGATATGAACCAAATACTGGCATCACAAGATGTTTGGAGCCAGCAGTAGGAGGATGTCAGAAACTTGAAGCAAGTGGGATTAGTGATGCTATTCCAGGAAGTCATTCGCATGGTGGAGTTGAACAAATCTTACCACAGACAAACTCAAAGCCTGAGGTTCAAGAAGACTTTAATTTGGAAAAGATGGGTTGTGATCCCGTAGATACAAAACATGCTGATATGCCATCAGAGATGAAATGCTCTCTATGCAACTCGTTTTTCAAGGAGGCTGTGATGATACCCTGCTGCCAGCACAGTTTTTGTGAGAAATGTATACATCAAATGCTGCTTGAGAAGGCAAGATGTCCCAAGTGTTTTTCAACCAAGTGCAGAATTGAAGATCTGCTACCAAATATATCTCTTAGGCAAGCAATGGACCATTTCCAAGAGTCTCAAAATTTAATCACTGTTCCAGATAATGCTTTTTGCCAATACGCTCCAGATGGAGAATCGGGAATTCAGGCAAAAGATGTCTCTTGTGGTGGTAGTATTTTTCAAAGGGAGTCAGAGTTGCCTCACTCTCCTGAAACAGGGATGGGATCTAATAATTGCTTAGCAGAATCTGCTTGTCACTCACCATTCAAAAATGATGCGCCGTATCATTTTGGTGCAAGAAACATGCAAAAAATTCCCAAGTTTTCGCACAAGAACAATCAAATCGATGGAGATGGATACGGTTATACTCGTGTGGCTCCATATGGCTCGGCAGCTTTTGATGATTTCCAAGGGGAAAGCAAGCCTATACCTAAGGAAGCTGAACCTGTAATCAAGAAAAAGAGGCCACCTTGGGTTTATACTGCAGGTGGTGGAAAAAGTTTTTTGGAGGGTGGGAGAAATAGAAAGGGGGATCGTGCCTGTTATATGTGTGGCTCCCCAGACCATTTAATAAGAGTGTGTCCAGTTGCTACCAGTCCACGCCCTATGCTTCATTCAGGAAATGCAGTCTTTCCAGGAGCTATGCCAGGTTATGTGCCACCATACTGGGATGGGGCTCTGTTGCCTCATACCCCGCCCTTTAGAAATCTATACGGAAATCATGGGATGACAGCTTTTGACACGTTGATCCCTCACACTCCTTTTTCTGTTCATCCATACATGCACACGCCATCCATGTATAGATCGATTCCAGGCTTTGGTATGGGAATGGGAGGTGTAGCACCTCTTCCTGAAACTGGTGAAGACTGTTATATAAGTCGTTCAGAATTTCTGGATCTTGAAGGTCAAGAAAAGAGGAGAAAACTTTCAAGGGAGAATTTTAGGAGAGATCAATCTTGTGATGACGATGAAGACCGGGGGAGGCATCAGTATAATGGGAGTGCAAGATTGCAAGAGCATAAATCTTTTGTAAACAGGGAAAAGAGTGGAAGCTACTCCAGTGACGGCTCTACTAAAAGGTCTCAGAGACAAGATCGGCATCGTAATCAGATAAATGATGACAACATTCATTTGGTTGGTCATCGGAAGAGTTCTCATTTGGTGGTTGGTCATCAGGATGGGAAACTGCATAATCCCATGGAGAAATCAAGTTCAGAATTAGATGATATGCCAAGTAGCTCCAGTTGGCACAGTGAAGAGAAACACAAACATTATCATAGAAGCTCCAGAAAGCACAATGAAAGAAGAGAGCAGTGTGACGGTGATAAACACAAACACTATGATAGAAGCTCCAGATATCACAAGGAAAGAAGAGAGCAGTGTGGTAGTGATTCTAGTCGGAGTCATCATCAAAATATCATTGAGAAAGATGATAAGAGAAAGGGAATTCAGCATAATAACAAAAGGCACAAACATCACAGTAACTCGGGATCTGATTTAGAACACAGTGTTTCCAGTGATAAGAAGCTACAGAAAGGGAGCAGTCACAATTTTAGAAAATCTGAGCACAATGCAAAGTCTAGTGTTGATGAGCGCAGTCATGACAGATGGAAAATGGTTAGTGGGTCAGATGAAGATAGTGGAGAAGATTATCGGTACTGTAAACGGAAAAGGGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005623 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0044237 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

807

Amino Acids

90.8

Weight (kDa)

7.59

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DWNN	PF08783	3 - 77	1.9e-19	DWNN domain
zf-C3HC4_2	PF13923	208 - 247	1.8e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24890 AT5G50400 AT5G50400
fragaria_vesca	FvH4_5g08240 FvH4_5g08241 FvH4_5g08282 FvH4_5g08283 FvH4_5g08284
malus_domestica	MD06G1142200.v1.1 MD06G1142300.v1.1 MD06G1142400.v1.1 MD14G1157600.v1.1
prunus_persica	Prupe.5G151400_v2.0.a1 Prupe.5G151500_v2.0.a1 Prupe.5G151600_v2.0.a1
pyrus_communis	pycom06g13200 pycom06g13210 pycom06g13220
rosa_chinensis	RchiOBHm_Chr7g0190231 RchiOBHm_Chr7g0190241 RchiOBHm_Chr7g0190251 RchiOBHm_Chr7g0190261 RchiOBHm_Chr7g0190281
rosa_laevigata	RLG00000004547 RLG00000004549 RLG00000004550 RLG00000004551
rosa_multiflora	Rmu_sc0004886.1_g000021 Rmu_sc0005487.1_g000006 Rmu_sc0031901.1_g000001 Rmu_sc0031902.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264770
rosa_rugosa	Rorug06G0503100.1 Rorug06G0503300 Rorug06G0503400
rosa_samantha	Rh7AG108500 Rh7AG108800 Rh7AG108900 Rh7AG109100 Rh7BG111100 Rh7BG111300 Rh7BG111400 Rh7BG111500 Rh7CG113500 Rh7CG113700 Rh7CG113800 Rh7CG113900 Rh7DG112100
rosa_wichuraiana	Rw7G009410 Rw7G009420 Rw7G009440 Rw7G009450 Rw7G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1217
Acc36I	ACCTGC	1 cut(s)	1217
AccB7I	CCANNNNNTGG	2 cut(s)	404, 1559
AccI	GTMKAC	3 cut(s)	48, 306, 700
AciI	CCGC	6 cut(s)	5, 103, 201, 287, 379, 1436
AclWI	GGATC	7 cut(s)	244, 575, 973, 1281, 1483, 1644, 2239
AcsI	RAATTY	9 cut(s)	17, 35, 192, 823, 882, 1053, 1628, 1678, 2187
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	173, 2399
AfiI	CCNNNNNNNGG	7 cut(s)	384, 385, 404, 434, 956, 1559, 1598
AflIII	ACRYGT	3 cut(s)	244, 330, 1482
AgeI	ACCGGT	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	4 cut(s)	481, 1375, 1387, 1552
Alw21I	GWGCWC	1 cut(s)	2310
Alw26I	GTCTC	5 cut(s)	293, 822, 904, 1822, 1827
AlwI	GGATC	7 cut(s)	244, 575, 973, 1281, 1483, 1644, 2239
AlwNI	CAGNNNCTG	1 cut(s)	989
Ama87I	CYCGRG	2 cut(s)	344, 2227
AoxI	GGCC	1 cut(s)	1205
ApeKI	GCWGC	3 cut(s)	672, 712, 1133
ApoI	RAATTY	9 cut(s)	17, 35, 192, 823, 882, 1053, 1628, 1678, 2187
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	490, 1666
AspLEI	GCGC	2 cut(s)	1021, 2337
AspS9I	GGNCC	1 cut(s)	802
AsuC2I	CCSGG	1 cut(s)	1718
AsuHPI	GGTGA	3 cut(s)	993, 1613, 2075
AvaI	CYCGRG	2 cut(s)	344, 2227
AvaII	GGWCC	1 cut(s)	802
AxyI	CCTNAGG	2 cut(s)	540, 1173
BanII	GRGCYC	1 cut(s)	1420
BarI	GAAGNNNNNNTAC	4 cut(s)	756, 788, 1572, 1604
BauI	CACGAG	1 cut(s)	1110
BbsI	GAAGAC	4 cut(s)	136, 558, 1611, 1719
Bbv12I	GWGCWC	1 cut(s)	2310
BbvI	GCAGC	3 cut(s)	659, 699, 1145
BceAI	ACGGC	2 cut(s)	1006, 1822
BciT130I	CCWGG	4 cut(s)	483, 1377, 1389, 1554
BciVI	GTATCC	2 cut(s)	345, 1091
BcnI	CCSGG	1 cut(s)	1718
BcoDI	GTCTC	5 cut(s)	293, 822, 904, 1822, 1827
BfaI	CTAG	2 cut(s)	2136, 2322
BfmI	CTRYAG	3 cut(s)	231, 1224, 2270
BfuAI	ACCTGC	1 cut(s)	1217
BfuI	GTATCC	2 cut(s)	345, 1091
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	4 cut(s)	202, 673, 713, 1134
BlpI	GCTNAGC	1 cut(s)	979
BlsI	GCNGC	4 cut(s)	203, 674, 714, 1135
Bme1390I	CCNGG	5 cut(s)	483, 1377, 1389, 1554, 1718
Bme18I	GGWCC	1 cut(s)	802
BmeT110I	CYCGRG	2 cut(s)	344, 2227
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	802
BmiI	GGNNCC	3 cut(s)	426, 1119, 1297
BmrFI	CCNGG	5 cut(s)	483, 1377, 1389, 1554, 1718
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	6 cut(s)	364, 417, 463, 1006, 1735, 1849
BmuI	ACTGGG	1 cut(s)	1417
BoxI	GACNNNNGTC	1 cut(s)	356
BpiI	GAAGAC	4 cut(s)	136, 558, 1611, 1719
BpmI	CTGGAG	5 cut(s)	849, 1783, 1966, 2011, 2077
Bpu1102I	GCTNAGC	1 cut(s)	979
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	1718
Bsa29I	ATCGAT	2 cut(s)	1086, 1547
BsaBI	GATNNNNATC	2 cut(s)	135, 1839
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	1827
BsaJI	CCNNGG	5 cut(s)	345, 1150, 1211, 1717, 1938
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	7 cut(s)	384, 385, 404, 434, 956, 1559, 1598
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	8 cut(s)	409, 1325, 1335, 1412, 1603, 1800, 1983, 2256
Bse21I	CCTNAGG	2 cut(s)	540, 1173
Bse3DI	GCAATG	1 cut(s)	804
Bse8I	GATNNNNATC	2 cut(s)	135, 1839
BseBI	CCWGG	4 cut(s)	483, 1377, 1389, 1554
BseCI	ATCGAT	2 cut(s)	1086, 1547
BseDI	CCNNGG	5 cut(s)	345, 1150, 1211, 1717, 1938
BseGI	GGATG	9 cut(s)	99, 379, 446, 966, 1417, 1473, 1513, 1532, 1924
BseJI	GATNNNNATC	2 cut(s)	135, 1839
BseLI	CCNNNNNNNGG	7 cut(s)	384, 385, 404, 434, 956, 1559, 1598
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	531, 1838, 2295
BseNI	ACTGG	8 cut(s)	409, 1325, 1335, 1412, 1603, 1800, 1983, 2256
BseRI	GAGGAG	1 cut(s)	1672
BseXI	GCAGC	3 cut(s)	659, 699, 1145
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	1 cut(s)	1207
BshTI	ACCGGT	1 cut(s)	161
BshVI	ATCGAT	2 cut(s)	1086, 1547
BsiHKAI	GWGCWC	1 cut(s)	2310
BsiHKCI	CYCGRG	2 cut(s)	344, 2227
BsiSI	CCGG	2 cut(s)	162, 1717
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	7 cut(s)	384, 385, 404, 434, 956, 1559, 1598
BsmAI	GTCTC	5 cut(s)	293, 822, 904, 1822, 1827
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	1 cut(s)	1207
Bso31I	GGTCTC	1 cut(s)	1827
BsoBI	CYCGRG	2 cut(s)	344, 2227
Bsp1286I	GDGCHC	2 cut(s)	1420, 2310
Bsp1720I	GCTNAGC	1 cut(s)	979
Bsp19I	CCATGG	1 cut(s)	1938
BspACI	CCGC	6 cut(s)	5, 103, 201, 287, 379, 1436
BspANI	GGCC	1 cut(s)	1207
BspCNI	CTCAG	3 cut(s)	532, 1837, 2296
BspDI	ATCGAT	2 cut(s)	1086, 1547
BspHI	TCATGA	1 cut(s)	2341
BspLI	GGNNCC	3 cut(s)	426, 1119, 1297
BspMAI	CTGCAG	2 cut(s)	235, 1228
BspMI	ACCTGC	1 cut(s)	1217
BspPI	GGATC	7 cut(s)	244, 575, 973, 1281, 1483, 1644, 2239
BspTNI	GGTCTC	1 cut(s)	1827
BsrDI	GCAATG	1 cut(s)	804
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	8 cut(s)	409, 1325, 1335, 1412, 1603, 1800, 1983, 2256
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	5 cut(s)	345, 1150, 1211, 1717, 1938
BssNAI	GTATAC	1 cut(s)	701
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	1110
BssT1I	CCWWGG	3 cut(s)	1150, 1211, 1938
Bst1107I	GTATAC	1 cut(s)	701
Bst2BI	CACGAG	1 cut(s)	1110
Bst2UI	CCWGG	4 cut(s)	483, 1377, 1389, 1554
Bst6I	CTCTTC	5 cut(s)	1593, 1883, 1992, 2041, 2107
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	5 cut(s)	379, 429, 677, 795, 1163
BstDEI	CTNAG	6 cut(s)	540, 788, 979, 1173, 1824, 2304
BstDSI	CCRYGG	1 cut(s)	1938
BstENI	CCTNNNNNAGG	1 cut(s)	954
BstF5I	GGATG	9 cut(s)	99, 379, 446, 966, 1417, 1473, 1513, 1532, 1924
BstHHI	GCGC	2 cut(s)	1021, 2337
BstMAI	GTCTC	5 cut(s)	293, 822, 904, 1822, 1827
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 633, 989
BstNI	CCWGG	4 cut(s)	483, 1377, 1389, 1554
BstNSI	RCATGY	4 cut(s)	248, 602, 1048, 1525
BstPAI	GACNNNNGTC	1 cut(s)	356
BstSCI	CCNGG	5 cut(s)	481, 1375, 1387, 1552, 1716
BstSFI	CTRYAG	3 cut(s)	231, 1224, 2270
BstV1I	GCAGC	3 cut(s)	659, 699, 1145
BstV2I	GAAGAC	4 cut(s)	136, 558, 1611, 1719
BstX2I	RGATCY	4 cut(s)	766, 965, 1636, 2231
BstXI	CCANNNNNNTGG	1 cut(s)	1407
BstYI	RGATCY	4 cut(s)	766, 965, 1636, 2231
BstZ17I	GTATAC	1 cut(s)	701
Bsu15I	ATCGAT	2 cut(s)	1086, 1547
Bsu36I	CCTNAGG	2 cut(s)	540, 1173
BsuI	GTATCC	2 cut(s)	345, 1091
BsuRI	GGCC	1 cut(s)	1207
BsuTUI	ATCGAT	2 cut(s)	1086, 1547
BtgI	CCRYGG	1 cut(s)	1938
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	9 cut(s)	99, 379, 446, 966, 1417, 1473, 1513, 1532, 1924
BtsI	GCAGTG	2 cut(s)	2060, 2126
BtsIMutI	CAGTG	7 cut(s)	831, 1807, 1999, 2060, 2126, 2254, 2263
BveI	ACCTGC	1 cut(s)	1217
Cac8I	GCNNGC	5 cut(s)	379, 429, 677, 795, 1163
CaiI	CAGNNNCTG	1 cut(s)	989
CciI	TCATGA	1 cut(s)	2341
CfoI	GCGC	2 cut(s)	1021, 2337
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	802
ClaI	ATCGAT	2 cut(s)	1086, 1547
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	172, 2398
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	9 cut(s)	245, 497, 599, 1045, 1463, 1522, 1537, 1939, 2342
CviQI	GTAC	2 cut(s)	172, 2398
DdeI	CTNAG	6 cut(s)	540, 788, 979, 1173, 1824, 2304
Eam1104I	CTCTTC	5 cut(s)	1593, 1883, 1992, 2041, 2107
EarI	CTCTTC	5 cut(s)	1593, 1883, 1992, 2041, 2107
EciI	GGCGGA	2 cut(s)	92, 276
Eco130I	CCWWGG	3 cut(s)	1150, 1211, 1938
Eco24I	GRGCYC	1 cut(s)	1420
Eco31I	GGTCTC	1 cut(s)	1827
Eco32I	GATATC	1 cut(s)	2099
Eco47I	GGWCC	1 cut(s)	802
Eco81I	CCTNAGG	2 cut(s)	540, 1173
Eco88I	CYCGRG	2 cut(s)	344, 2227
EcoNI	CCTNNNNNAGG	1 cut(s)	954
EcoRI	GAATTC	2 cut(s)	882, 2187
EcoRII	CCWGG	4 cut(s)	481, 1375, 1387, 1552
EcoRV	GATATC	1 cut(s)	2099
EcoT14I	CCWWGG	3 cut(s)	1150, 1211, 1938
EcoT38I	GRGCYC	1 cut(s)	1420
ErhI	CCWWGG	3 cut(s)	1150, 1211, 1938
FaeI	CATG	9 cut(s)	248, 500, 602, 1048, 1466, 1525, 1540, 1942, 2345
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	9 cut(s)	244, 496, 598, 1044, 1462, 1521, 1536, 1938, 2341
FauI	CCCGC	2 cut(s)	386, 1443
FauNDI	CATATG	1 cut(s)	1123
FblI	GTMKAC	3 cut(s)	48, 306, 700
Fnu4HI	GCNGC	4 cut(s)	202, 673, 713, 1134
FokI	GGATG	9 cut(s)	86, 386, 453, 973, 1424, 1480, 1500, 1519, 1931
FriOI	GRGCYC	1 cut(s)	1420
Fsp4HI	GCNGC	4 cut(s)	202, 673, 713, 1134
FspBI	CTAG	2 cut(s)	2136, 2322
GlaI	GCGC	2 cut(s)	1020, 2336
GluI	GCNGC	4 cut(s)	202, 673, 713, 1134
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	5 cut(s)	849, 1783, 1966, 2011, 2077
HaeIII	GGCC	1 cut(s)	1207
HapII	CCGG	2 cut(s)	162, 1717
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	1021, 2337
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	9 cut(s)	248, 500, 602, 1048, 1466, 1525, 1540, 1942, 2345
Hin6I	GCGC	2 cut(s)	1019, 2335
HinP1I	GCGC	2 cut(s)	1019, 2335
HincII	GTYRAC	3 cut(s)	49, 307, 328
HindII	GTYRAC	3 cut(s)	49, 307, 328
HpaII	CCGG	2 cut(s)	162, 1717
HphI	GGTGA	3 cut(s)	993, 1613, 2075
Hpy166II	GTNNAC	8 cut(s)	49, 174, 307, 328, 701, 1340, 1774, 2405
Hpy8I	GTNNAC	8 cut(s)	49, 174, 307, 328, 701, 1340, 1774, 2405
Hpy99I	CGWCG	2 cut(s)	50, 155
HpyAV	CCTTC	4 cut(s)	50, 364, 715, 1637
HpyCH4IV	ACGT	2 cut(s)	330, 1484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 633, 989
HpyF3I	CTNAG	6 cut(s)	540, 788, 979, 1173, 1824, 2304
HpySE526I	ACGT	2 cut(s)	330, 1484
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	9 cut(s)	248, 500, 602, 1048, 1466, 1525, 1540, 1942, 2345
HspAI	GCGC	2 cut(s)	1019, 2335
LmnI	GCTCC	9 cut(s)	424, 868, 1123, 1301, 1379, 1985, 2030, 2096, 2280
Lsp1109I	GCAGC	3 cut(s)	659, 699, 1145
LweI	GCATC	6 cut(s)	364, 417, 463, 1006, 1735, 1849
MaeI	CTAG	2 cut(s)	2136, 2322
MaeII	ACGT	2 cut(s)	330, 1484
MaeIII	GTNAC	5 cut(s)	995, 1802, 2057, 2222, 2285
MflI	RGATCY	4 cut(s)	766, 965, 1636, 2231
MhlI	GDGCHC	2 cut(s)	1420, 2310
MlyI	GAGTC	3 cut(s)	824, 938, 2152
MmeI	TCCRAC	2 cut(s)	174, 2120
MroXI	GAANNNNTTC	2 cut(s)	490, 1666
MseI	TTAA	3 cut(s)	558, 827, 1310
MslI	CAYNNNNRTG	3 cut(s)	495, 1032, 1917
MspI	CCGG	2 cut(s)	162, 1717
MspR9I	CCNGG	5 cut(s)	483, 1377, 1389, 1554, 1718
MvaI	CCWGG	4 cut(s)	483, 1377, 1389, 1554
MwoI	GCNNNNNNNGC	3 cut(s)	239, 633, 989
NciI	CCSGG	1 cut(s)	1718
NcoI	CCATGG	1 cut(s)	1938
NdeI	CATATG	1 cut(s)	1123
NlaIII	CATG	9 cut(s)	248, 500, 602, 1048, 1466, 1525, 1540, 1942, 2345
NlaIV	GGNNCC	3 cut(s)	426, 1119, 1297
NmeAIII	GCCGAG	1 cut(s)	1109
NmuCI	GTSAC	4 cut(s)	995, 1802, 2057, 2285
NspI	RCATGY	4 cut(s)	248, 602, 1048, 1525
PagI	TCATGA	1 cut(s)	2341
PaqCI	CACCTGC	1 cut(s)	1217
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 147, 336
PdmI	GAANNNNTTC	2 cut(s)	490, 1666
PfeI	GAWTC	7 cut(s)	41, 131, 283, 875, 986, 1549, 2132
PflMI	CCANNNNNTGG	2 cut(s)	404, 1559
PfoI	TCCNGGA	2 cut(s)	481, 1375
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	203, 674, 714, 1135
PleI	GAGTC	3 cut(s)	823, 937, 2151
PpsI	GAGTC	3 cut(s)	823, 937, 2151
PscI	ACATGT	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	356
Psp6I	CCWGG	4 cut(s)	481, 1375, 1387, 1552
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	4 cut(s)	481, 1375, 1387, 1552
PspN4I	GGNNCC	3 cut(s)	426, 1119, 1297
PspPI	GGNCC	1 cut(s)	802
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
PstI	CTGCAG	2 cut(s)	235, 1228
PstNI	CAGNNNCTG	1 cut(s)	989
PsuI	RGATCY	4 cut(s)	766, 965, 1636, 2231
RsaI	GTAC	2 cut(s)	173, 2399
RsaNI	GTAC	2 cut(s)	172, 2398
RseI	CAYNNNNRTG	3 cut(s)	495, 1032, 1917
SalI	GTCGAC	2 cut(s)	47, 305
SaqAI	TTAA	3 cut(s)	558, 827, 1310
SatI	GCNGC	4 cut(s)	202, 673, 713, 1134
Sau96I	GGNCC	1 cut(s)	802
SbfI	CCTGCAGG	1 cut(s)	235
SchI	GAGTC	3 cut(s)	824, 938, 2152
ScrFI	CCNGG	5 cut(s)	483, 1377, 1389, 1554, 1718
SdaI	CCTGCAGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	1420, 2310
SfaNI	GCATC	6 cut(s)	364, 417, 463, 1006, 1735, 1849
SfcI	CTRYAG	3 cut(s)	231, 1224, 2270
SinI	GGWCC	1 cut(s)	802
SmiMI	CAYNNNNRTG	3 cut(s)	495, 1032, 1917
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse8387I	CCTGCAGG	1 cut(s)	235
SsiI	CCGC	6 cut(s)	5, 103, 201, 287, 379, 1436
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	2136, 2322
StyD4I	CCNGG	5 cut(s)	481, 1375, 1387, 1552, 1716
StyI	CCWWGG	3 cut(s)	1150, 1211, 1938
TaiI	ACGT	2 cut(s)	333, 1487
TaqI	TCGA	7 cut(s)	39, 48, 54, 61, 306, 1086, 1547
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	7 cut(s)	41, 131, 283, 875, 986, 1549, 2132
Tru1I	TTAA	3 cut(s)	558, 827, 1310
Tru9I	TTAA	3 cut(s)	558, 827, 1310
TscAI	CASTG	7 cut(s)	838, 1807, 1999, 2060, 2126, 2254, 2263
TseFI	GTSAC	4 cut(s)	995, 1802, 2057, 2285
TseI	GCWGC	3 cut(s)	672, 712, 1133
Tsp45I	GTSAC	4 cut(s)	995, 1802, 2057, 2285
TspDTI	ATGAA	8 cut(s)	408, 635, 1343, 1502, 1725, 1859, 2055, 2388
TspGWI	ACGGA	5 cut(s)	34, 186, 199, 1470, 2422
TspRI	CASTG	7 cut(s)	838, 1807, 1999, 2060, 2126, 2254, 2263
Van91I	CCANNNNNTGG	2 cut(s)	404, 1559
VpaK11BI	GGWCC	1 cut(s)	802
XagI	CCTNNNNNAGG	1 cut(s)	954
XapI	RAATTY	9 cut(s)	17, 35, 192, 823, 882, 1053, 1628, 1678, 2187
XceI	RCATGY	4 cut(s)	248, 602, 1048, 1525
XmiI	GTMKAC	3 cut(s)	48, 306, 700
XmnI	GAANNNNTTC	2 cut(s)	490, 1666
XspI	CTAG	2 cut(s)	2136, 2322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.