Rmu_sc0031902.1_g000001

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031902.1
OG0001351
Physical Location & Seq
Forward (+)
1 .. 1542
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031902.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
ggggaagattctcaatgggtaacggtggaagttggcactcccaagccttctgaagttgattggttggcagtcttttctcctgcaaatttcaagtttgccaatgattccaattctgattattcaaagacaggaaaaacatctttaaaatttcaattgatcaatcaaagggaagatttttcatttgcattattctccggtgggctgtcaaatccaaaactggtagctgtttctaatgttataacttttgcaaatccaaaggcacccctttacccccgtcttgctctagggcagcactgggatgaaatgacagtgacctggacaagcggctataatattgatgaagctgtaccttttgttgaatgggatatcaagggagagtctcaaactagctctccagcaggaacattaacttttactcgagagaccatgtgcggtatggatcatatgatcagtttgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

4.68

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 259
AciI CCGC 2 cut(s) 324, 432
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 2 cut(s) 85, 146
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 348
AgsI TTSAA 4 cut(s) 91, 123, 152, 359
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 3 cut(s) 224, 344, 390
AluI AGCT 3 cut(s) 224, 344, 390
Alw26I GTCTC 2 cut(s) 384, 416
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 85, 146
AvaI CYCGRG 1 cut(s) 417
BanI GGYRCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 2 cut(s) 156, 447
BcoDI GTCTC 2 cut(s) 384, 416
BfaI CTAG 2 cut(s) 284, 387
BisI GCNGC 2 cut(s) 290, 325
BlsI GCNGC 2 cut(s) 291, 326
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bse1I ACTGG 2 cut(s) 222, 299
BseBI CCWGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 222, 299
BseXI GCAGC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 384, 416
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 417
Bsp143I GATC 3 cut(s) 156, 439, 447
BspACI CCGC 2 cut(s) 324, 432
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 416
BsrI ACTGG 2 cut(s) 222, 299
BssMI GATC 3 cut(s) 156, 439, 447
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 25, 310
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 159, 442, 450
BstMAI GTCTC 2 cut(s) 384, 416
BstMBI GATC 3 cut(s) 156, 439, 447
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 292, 315
Csp6I GTAC 1 cut(s) 347
CviAII CATG 1 cut(s) 427
CviJI RGCY 6 cut(s) 46, 202, 224, 327, 344, 390
CviKI_1 RGCY 6 cut(s) 46, 202, 224, 327, 344, 390
CviQI GTAC 1 cut(s) 347
DpnI GATC 3 cut(s) 158, 441, 449
DpnII GATC 3 cut(s) 156, 439, 447
DraI TTTAAA 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 416
Eco32I GATATC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 367
FaeI CATG 1 cut(s) 430
FaiI YATR 6 cut(s) 239, 330, 428, 437, 444, 446
FatI CATG 1 cut(s) 426
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 2 cut(s) 156, 447
Fnu4HI GCNGC 2 cut(s) 290, 325
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 2 cut(s) 290, 325
FspBI CTAG 2 cut(s) 284, 387
GluI GCNGC 2 cut(s) 290, 325
GsuI CTGGAG 1 cut(s) 378
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 430
HinfI GANTC 3 cut(s) 8, 104, 377
HpaII CCGG 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 52, 115
Hpy188III TCNNGA 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 25, 310
HpyCH4V TGCA 3 cut(s) 83, 185, 248
Hsp92II CATG 1 cut(s) 430
Ksp22I TGATCA 2 cut(s) 156, 447
Kzo9I GATC 3 cut(s) 156, 439, 447
LpnPI CCDG 9 cut(s) 93, 114, 203, 208, 280, 301, 328, 384, 408
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 2 cut(s) 284, 387
MaeIII GTNAC 2 cut(s) 19, 310
MalI GATC 3 cut(s) 158, 441, 449
MboI GATC 3 cut(s) 156, 439, 447
MboII GAAGA 2 cut(s) 17, 182
MfeI CAATTG 1 cut(s) 152
MluCI AATT 4 cut(s) 85, 109, 146, 152
MlyI GAGTC 1 cut(s) 386
MseI TTAA 2 cut(s) 143, 407
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 444
NdeII GATC 3 cut(s) 156, 439, 447
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 417
PfeI GAWTC 2 cut(s) 8, 104
PkrI GCNGC 2 cut(s) 291, 326
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PsiI TTATAA 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 261
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 2 cut(s) 143, 407
SatI GCNGC 2 cut(s) 290, 325
Sau3AI GATC 3 cut(s) 156, 439, 447
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 316
SetI ASST 5 cut(s) 226, 317, 346, 352, 392
Sfr274I CTCGAG 1 cut(s) 417
SlaI CTCGAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
Sse9I AATT 4 cut(s) 85, 109, 146, 152
SsiI CCGC 2 cut(s) 324, 432
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 284, 387
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 25, 310
TaqI TCGA 1 cut(s) 418
TasI AATT 4 cut(s) 85, 109, 146, 152
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 2 cut(s) 8, 104
Tru1I TTAA 2 cut(s) 143, 407
Tru9I TTAA 2 cut(s) 143, 407
TscAI CASTG 2 cut(s) 299, 315
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 168, 315, 354
TspRI CASTG 2 cut(s) 299, 315
XapI RAATTY 2 cut(s) 85, 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 417
XspI CTAG 2 cut(s) 284, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.