Rroxscaffold_3G00264770

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
58290084 .. 58303226
13143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264770.1

Sequence Viewer

Length: 5439 bp
ATGCAGGCGACGGGGTTCAGCCGCTTTCCCAAGGTTCAAATCCACAGAGCTGTTTATGAGCTTCATGAAAATGCTTCCCTCAAACCATACCCTGCACTTCTTGGTATGAAGGGAGAAGATTCTGAGTGGGTAACTGTGAAAGTTGATAGTCCTAATCCTTCTGGAGATGATTGCTCATCGACTTGTCCATCTACCGACTCCAGACAACAGGCTCCATACATATGCTCAGCTCCGATCAAGTACATGTTTGCGAATGATTCCAGTGTTGATTATACAAAGACTGGCAAAGGAACTTTCAAACTTCAGTTGATCAATCAAAGGAAGATTTTTTCATTTGCATTGTTCTCAGGCGGGCTATCAAACCCAAAATTGGTGGCAGTTTCTAGTGCTATAAGTTTCTTGAATCCGAAAGCACCCCTTTACCCTCGTCTTGCTCAAGGAAAGCAATGGGATGAAATGACAGTAACCTGGACAAGTGGCTATAACATTTATGAAGCTGTACCTTTTGTTGAGTGGGGTCTAAAGGGAGAGGCTCAAACCCGATCTCCAGCAGGAACATTGACTTTTACACGAGAGAGCATGTGTGGTCCACCAGCTCGAACAGTTGGTTGGCGCAATCCTGGTTTCATCCACACTAGTTTCTTAAAGGACCTTTGGCCAAATTCATTGTACACTTACAAGCTCGGTCATAAGTCATCTAATGGTTCCTATATTTGGAGCAAGTCTTACTCTTTCAAGTCATCACCATATCCCGGTCAGGACTCATTACAGCGCGTAGTTATATTTGGAGACATGGGAAAGGCTGAGCGCGATGGTTCAAATGAATACAGTAATTATCAGCCGGGTTCACTCAATACCACTGATCAACTGATCAAGGACTTAGATAACATTGACATAGTTTTCCACATAGGAGACATTTCTTATGCCAATGGATACATCTCACAGTGGGACCAGTTCACATCACAGGTTGAGCCCATTGCATCGACTGTACCATATATGATTGCAAGTGGTAATCATGAACGAGATACACCAGGGACCGGATCCTTCTATAATGGTAATGATGCAGGTGGTGAATGTGGTGTGCTAGCTGAGACTATGTTTTATGTTCCTGCTGAGAACCGAGCTAAGTTCTGGTACTCAACAGATTATGGCATGTTCCACTTCTGTGTAGCTGACACTGAACATGACTGGAGGGAAGGAACTGAGCAGTACAAATTTATTGAGAAATGCCTTGCATCAGTTGACAGGCAGAAACAGCCTTGGCTGATATTCATTGCTCATCGTGTTCTTGGTTATTCCTCCAACTTATATTATGGGTTGGATGGTTCATTTGAAGAGCCAATGGGTAGGGAAAGCATGCAAAAGCTATGGCAAAAGTACAAGGTGGATATTGCTTTCTATGGCCATGTCCATAACTATGAAAGAATATGCCCCATTTACCAGAATCAATGTGTAAACACAGAAAAATCCCATTATTCCGGGACTGTGAATGGAACAATCCACATTGTTGTTGGAGGAGGAGGCAGTCACTTATCAGAATTTAGCCCAGTGCAGACCACTTGGAGCCTTCACAAAGATCATGACTTTGGCTTTGTAAAACTCACAGCATTTAACCACTCATCACTTCTCATGGAGTACAAGAAGAGCAGTGATGGTAATGTCTATGATTCCTTCACTATCTCAAGGGACTACAGGGATGTCTTGGCATGCGTGCATGACAGTTGTCAGTTCACAGTTGCTCATAATATCAAGCCGAAGCTGCATGCAGGTGGTGGTGATGGAGTGCAGCCGCTCTCCAAGATTCAAATCCTCAGAGCTGTTTCTCAGCTTCACGAAAATGCCTCCGTCTCTGCGTACCCTGTCCTTCTTGGCACAAAAGGGGAAGATCTTGGGTGGGTAACTGTGACAATTTCTAGTCCTAATCCTGCACAAGATGATTGGGTGGCAGTTTTTTCTCCTGCAGTTTTCAATGCATCGACCTGTCCATACAATGAAGATTACTATGAGCCGTACATATGCACATCTCCTATAAAGTACAAGTTTGCCAATTATTCCAGTGCTGATTACGCAACCACTGGCAATTCAACTTTAAAGTTCCAATTGATCAATCAACGGGCAGATTTTTCGTTTGCATTGTTCTCCGGCGGGCTGTCAAACCCGAAATTGGTGGCAGTTTCTAATAATGTAACCTTTGCGTATCCGAAGGCTCCCCTTTACCCTCGTCTTGCTCTAGGGAAGCTCTGGGATGAAATGACAGTGACTTGGACAAGTGGCTATAACATCGATGAAGCTGTACCTTTAGTTGAGTGGGGTTTAGAGGGAGAGCCTCAAACTCGATCTCCAGCAGGAACATTGACTTTCAGTCGACGGGACATGTGTGCCGCACCCGCACGAACAGTTGGTTGGCGTGATCCTGGTTTCATCCATACAAGTTTTCTAAAAGATTTGTGGCCAAATTCAGTGTACTCTTACAAGCTTGGTCATAGGTTATCTAATGGTTCCTATATCTGGAGCAAGGCTTACTCTTTCAAGTCATCACCATATCCTGGGCAGGAGTCATTGCAACGTGTTATTATATTTGGTGACATGGGAAAGGCTGAGCGTGATGGTTCAAATGAATATGCTGATTATCAGCCCGGCTCACTCAATACCACAGATCAGCTAATCAAGGATTTGGACAACATTGACATAGTTTTTCATATAGGAGATATTCCTTATGCCAATGGATACATCTCACAGTGGGATCAGTTCACATCACAGGTGGAGCCGATTTCATCAGTTGTACCATATATGGTTGCCAGTGGCAACCATGAACGAGATACAACAGGGACCGGATCCTTCTACAACACTAATGATGCAGGTGGTGAATGTGGTGTGCCAGCTGAGACCATGTATTATGTTCCTGCTGAGAACAGAGCTAAATTCTGGTATGCAACAGATTATGGCATGTTCCACTTCTGTATAGCTGACACTGAGCATGACTGGAGAGAAGGTTCCGAGCAGTACAAATTTATTGAGAAGTGCCTTGCATCTGCCAACAGGCACAAGCAACCTTGGCTGATATTCGCTGCTCATCGTGTTCTCGGTTATTCCTCTAACTCTTGGTATGGACAAGAGGGTTCATTTGAAGAGCCCATGGGAAGGGATGACATGCAAAAGCTTTGGCAAAGATACAAGGTGGACATTGCATTTTACGGCCATGTCCATAACTACGAAAGAATATGCCCCATCTATCAGAACCAGTGTGTAACTTCGGAAATCTCTAACTATTCAGGAACCGTCAACGGAACAATCCATGTTGTTGTTGGTGGAGGAGGCAGCCACTTATCAGATTTTAGTTCGCTGCGCACAGTTTGGAGCATTTACCAAGATCGAGATTATGGTTATACGAAACTCACAGCATATAACCACTCATCGCTCCTCTTCGAGTACATGAAGAGCAGCGATGGAAAGGTCTATGATTCATTCACCATCTCAAGGGACTACAAGGATGTCTTGGCCTATTCAAGTTTATCGTGGTGTGCCAAAGATCAAAGCTTCATATATTCTCTGAATATAACTGACATAAATTTTGGGATCAGTTCCTCATTGAATGATACTAATACCCAGGAGTTCTGGTTAACTCCATTCATTGTGTTCAAGACACCTATGGAGCAAATATTTCGACTTTTCACGATTCTGGTGATTTTGGGCTCCACCCATTTGGGCTCAGCTTGTGCTCAAATCTATGGAGACCAGCCACTCGCCAAGATTAACATTCGGAAAACCACTCTCGCCATTCATGACTCGGCCTCCATTAGAGCCTACCCTTCTGTTCTTGGCATACAGGGTGAGGATACAGATTGGGTGACTGTGGATCTCAAGTACCCTGATGCTTCTGATAATGACTGGGTTGGAGTTTTTTCTCCTGGAAGACTCAATGCATCACAGTGCCCACCAGTAGATGGTCAAAGAGAACAAACTCCATATATATGCACTGCTCCTATAAAGTACAAATATGCAAAACAAGACAATCCAGGTTATACAAAGACCGGCAATGCAACTTTGAAGTTTCAGCTTATAAATCAGCGAGCAGATTTCTCTTTTGCATTATTTTCAGGCGGATTGTCAAATCCAAAATTGGTGGCAATTTCAAATTTCTTGACATTTGCCAATCCTAAAGCGCCTGTTTATCCACGTCTGGCTCAAGGGAAGTCTTGGAATGAAATGACAGTAACATGGACAAGTGGCTACGGCGTAGGCGAAGCTGTTCCATTTGTTGAGTGGGGTATGAAGGGCGATATTCGAAAGCGATCTGCAGCTGCAACATTGACATTTGATCAGAACAGCTTGTGTGGTTCACCTGCAAGGACAGTTGGGTGGCGCGATCCTGGTTTCATACACACAAGTTTCCTGAACAACTTGTGGCCAAACACATTGTACACCTATAGGATGGGTCATCGTTGCTTGGATGGTCAGTATATTTGGAGCAAGGTCTACTCATTCAAATCATCTCCATATCCTGGACAAGATTCCTTGCAGCGCGTTGTAATATTTGGTGACATGGGAAAGGCAGAGCGTGATGGTTCAAATGAGTACAGTGATTATCAACCTGGTGCTCTGAACACTACAGATCAAGTCATCAGTGACTTAAACAACATTGACATAGTTTTTCATATAGGAGATCTATCATATGCAAATGGCTATATTTCACAATGGGACCAATTCACAGCACAGGTGGAGCCCATTGCATCAACTGTTCCATATATGGTTGGCAGTGGTAATCATGAACGTGATTGGCCTGATTCGGGGTCCTATTACAACGGAATGGATTCAGGTGGAGAATGTGGTGTGCTTGGTGAGACTATGTTTTACGTTCCAGCTCACAACCGAGCTAAATATTGGTACTCTACAGATTATGGATTGTTTCACTTCTGTATAGCTGACACAGAACATGACTGGAGGGAGGGAACAGAGCAGTACAAGTTCATTGAGAATTGCCTTGCATCCGTGGATAGACAAAAACAACCTTGGTTGATCTTTGCAGGTCATCGTGTCCTTGGTTATACATCTGACAAATGGTATAGTCGAGGCGGCGCATTTGAAGAGCCTATGGGAAGGGAAAGCTTGCAGAAACTTTGGCAGAAGTACAAGAACCAATGCGTATCTTCAGAAAGATCTCACTACTCTGGGAAATTTAACGGAACAATCCATGTTGTTGTTGGAGGAGCTGGAAGCCACTTATCTGACTTCAGCCAACAACAACCAGGTTGGAGTCTCTACAGAGATCATGACTGGGGATTTGTAAAATTGACTGCATTCAATCACACATCCCTCCTCTTTGAGTACAAGAAAAGCAGCGACGGGAGGGTATACGATTCCTTCACCATATCAAGGGACTACACAGATGTATTGGCTTGTGTTCATGACAGTTGCGAACCAACGACAGCAGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1812

Amino Acids

203.74

Weight (kDa)

5.83

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_PAP PF17808 30 - 135 2.1e-29 Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N PF16656 142 - 246 7.5e-12 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 258 - 473 8.7e-17 Calcineurin-like phosphoesterase
Metallophos_C PF14008 498 - 557 6.1e-15 Iron/zinc purple acid phosphatase-like protein C
fn3_PAP PF17808 616 - 732 6.9e-44 Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N PF16656 740 - 844 1.7e-11 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 856 - 1071 3.9e-16 Calcineurin-like phosphoesterase
Metallophos_C PF14008 1096 - 1155 1.8e-15 Iron/zinc purple acid phosphatase-like protein C
fn3_PAP PF17808 1266 - 1385 3.7e-44 Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N PF16656 1392 - 1496 7.9e-13 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 1508 - 1688 8.7e-10 Calcineurin-like phosphoesterase
Metallophos_C PF14008 1728 - 1787 1.2e-17 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4061
AarI CACCTGC 4 cut(s) 1055, 1757, 2849, 4351
Acc16I TGCGCA 1 cut(s) 3347
Acc36I ACCTGC 5 cut(s) 1055, 1757, 2849, 4351, 5015
AccB7I CCANNNNNTGG 3 cut(s) 2546, 3944, 4502
AccBSI CCGCTC 1 cut(s) 1792
AccI GTMKAC 3 cut(s) 2365, 4476, 5352
AccII CGCG 4 cut(s) 774, 810, 4365, 4524
AciI CCGC 8 cut(s) 22, 351, 1790, 2145, 2382, 2388, 4101, 5073
AclWI GGATC 9 cut(s) 1035, 1048, 2405, 2751, 2829, 2842, 3584, 3864, 4361
AcoI YGGCCR 5 cut(s) 656, 1402, 2450, 3196, 4406
AcsI RAATTY 9 cut(s) 661, 1214, 1538, 2455, 2921, 3008, 3568, 4135, 5174
AcuI CTGAAG 3 cut(s) 287, 5133, 5215
AflIII ACRYGT 3 cut(s) 243, 2373, 2566
AhdI GACNNNNNGTC 1 cut(s) 2361
AhlI ACTAGT 1 cut(s) 635
AjiI CACGTC 1 cut(s) 4178
AjuI GAANNNNNNNTTGG 4 cut(s) 592, 624, 2386, 2418
AleI CACNNNNGTG 1 cut(s) 1164
AloI GAACNNNNNNTCC 2 cut(s) 2977, 3009
Alw21I GWGCWC 2 cut(s) 3721, 4600
Alw26I GTCTC 8 cut(s) 783, 906, 1085, 1852, 2879, 3726, 4835, 5261
AlwI GGATC 9 cut(s) 1035, 1048, 2405, 2751, 2829, 2842, 3584, 3864, 4361
AoxI GGCC 8 cut(s) 656, 1402, 2450, 3196, 3498, 3789, 4406, 4778
ApoI RAATTY 9 cut(s) 661, 1214, 1538, 2455, 2921, 3008, 3568, 4135, 5174
ArsI GACNNNNNNTTYG 6 cut(s) 1574, 1606, 3554, 3586, 5264, 5296
Asp700I GAANNNNTTC 2 cut(s) 4248, 4810
AspLEI GCGC 8 cut(s) 615, 774, 810, 3348, 4165, 4365, 4524, 5078
AspS9I GGNCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
AsuC2I CCSGG 4 cut(s) 753, 843, 1480, 2637
AsuII TTCGAA 1 cut(s) 4285
AsuNHI GCTAGC 1 cut(s) 1084
AvaII GGWCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
BaeGI GKGCMC 1 cut(s) 3935
BalI TGGCCA 4 cut(s) 658, 1404, 2452, 4408
BamHI GGATCC 2 cut(s) 1040, 2834
BanII GRGCYC 5 cut(s) 975, 3135, 3695, 3710, 4725
BauI CACGAG 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 3919
Bbv12I GWGCWC 2 cut(s) 3721, 4600
BceAI ACGGC 3 cut(s) 1993, 3211, 4249
BcgI CGANNNNNNTGC 4 cut(s) 2106, 2140, 3644, 3678
BciVI GTATCC 4 cut(s) 926, 2208, 2720, 3829
BclI TGATCA 5 cut(s) 309, 862, 870, 2103, 4318
BcnI CCSGG 4 cut(s) 753, 843, 1480, 2637
BcoDI GTCTC 8 cut(s) 783, 906, 1085, 1852, 2879, 3726, 4835, 5261
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 5 cut(s) 384, 636, 1085, 1914, 2231
BfmI CTRYAG 7 cut(s) 1690, 1959, 4296, 4426, 4608, 4890, 5260
BfoI RGCGCY 1 cut(s) 4166
BfuAI ACCTGC 5 cut(s) 1055, 1757, 2849, 4351, 5015
BfuI GTATCC 4 cut(s) 926, 2208, 2720, 3829
BglII AGATCT 3 cut(s) 1885, 4663, 5156
BlpI GCTNAGC 4 cut(s) 226, 804, 2598, 3709
Bme18I GGWCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
BmeRI GACNNNNNGTC 1 cut(s) 2361
BmgBI CACGTC 1 cut(s) 4178
BmgT120I GGNCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
BmrI ACTGGG 3 cut(s) 1541, 3898, 5284
BmtI GCTAGC 1 cut(s) 1088
BmuI ACTGGG 3 cut(s) 1541, 3898, 5284
BoxI GACNNNNGTC 1 cut(s) 1722
BpiI GAAGAC 1 cut(s) 3919
BpmI CTGGAG 8 cut(s) 183, 184, 531, 1210, 2325, 2530, 3004, 4960
Bpu1102I GCTNAGC 4 cut(s) 226, 804, 2598, 3709
Bpu14I TTCGAA 1 cut(s) 4285
BpuEI CTTGAG 5 cut(s) 420, 1666, 3460, 3845, 4170
BpuMI CCSGG 4 cut(s) 753, 843, 1480, 2637
Bsa29I ATCGAT 1 cut(s) 2283
BsaBI GATNNNNATC 1 cut(s) 1805
BsaI GGTCTC 2 cut(s) 2879, 3726
BsaWI WCCGGW 2 cut(s) 1037, 2831
Bse118I RCCGGY 1 cut(s) 4031
Bse3DI GCAATG 7 cut(s) 452, 975, 1272, 2558, 3183, 4042, 4725
Bse8I GATNNNNATC 1 cut(s) 1805
BseCI ATCGAT 1 cut(s) 2283
BseJI GATNNNNATC 1 cut(s) 1805
BseMI GCAATG 7 cut(s) 452, 975, 1272, 2558, 3183, 4042, 4725
BseRI GAGGAG 6 cut(s) 1530, 1533, 3327, 3410, 5220, 5306
BseSI GKGCMC 1 cut(s) 3935
BsgI GTGCAG 4 cut(s) 78, 1571, 1805, 1911
Bsh1236I CGCG 4 cut(s) 774, 810, 4365, 4524
BshFI GGCC 8 cut(s) 658, 1404, 2452, 3198, 3500, 3791, 4408, 4780
BshVI ATCGAT 1 cut(s) 2283
BsiHKAI GWGCWC 2 cut(s) 3721, 4600
BsiSI CCGG 8 cut(s) 753, 842, 1038, 1479, 2142, 2637, 2832, 4032
BslFI GGGAC 9 cut(s) 962, 1048, 1495, 1700, 2384, 2842, 3494, 4712, 5390
BsmAI GTCTC 8 cut(s) 783, 906, 1085, 1852, 2879, 3726, 4835, 5261
BsmBI CGTCTC 1 cut(s) 1852
BsmFI GGGAC 9 cut(s) 962, 1048, 1495, 1700, 2384, 2842, 3494, 4712, 5390
BsmI GAATGC 1 cut(s) 5297
BsnI GGCC 8 cut(s) 658, 1404, 2452, 3198, 3500, 3791, 4408, 4780
Bso31I GGTCTC 2 cut(s) 2879, 3726
Bsp119I TTCGAA 1 cut(s) 4285
Bsp1286I GDGCHC 8 cut(s) 975, 3135, 3695, 3710, 3721, 3935, 4600, 4725
Bsp1407I TGTACA 2 cut(s) 669, 4419
Bsp1720I GCTNAGC 4 cut(s) 226, 804, 2598, 3709
Bsp19I CCATGG 1 cut(s) 3135
BspACI CCGC 8 cut(s) 22, 351, 1790, 2145, 2382, 2388, 4101, 5073
BspANI GGCC 8 cut(s) 658, 1404, 2452, 3198, 3500, 3791, 4408, 4780
BspDI ATCGAT 1 cut(s) 2283
BspFNI CGCG 4 cut(s) 774, 810, 4365, 4524
BspHI TCATGA 7 cut(s) 64, 1015, 1579, 3781, 4765, 5269, 5404
BspMAI CTGCAG 2 cut(s) 1963, 4300
BspMI ACCTGC 5 cut(s) 1055, 1757, 2849, 4351, 5015
BspOI GCTAGC 1 cut(s) 1088
BspPI GGATC 9 cut(s) 1035, 1048, 2405, 2751, 2829, 2842, 3584, 3864, 4361
BspQI GCTCTTC 5 cut(s) 1329, 1637, 3123, 3431, 5079
BspT104I TTCGAA 1 cut(s) 4285
BspTNI GGTCTC 2 cut(s) 2879, 3726
BsrBI CCGCTC 1 cut(s) 1792
BsrDI GCAATG 7 cut(s) 452, 975, 1272, 2558, 3183, 4042, 4725
BsrFI RCCGGY 1 cut(s) 4031
BsrGI TGTACA 2 cut(s) 669, 4419
BssAI RCCGGY 1 cut(s) 4031
BssNAI GTATAC 1 cut(s) 5353
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 6 cut(s) 30, 1259, 3053, 3135, 5009, 5038
Bst1107I GTATAC 1 cut(s) 5353
Bst2BI CACGAG 1 cut(s) 570
Bst6I CTCTTC 6 cut(s) 1329, 1637, 3123, 3428, 3431, 5079
BstAUI TGTACA 2 cut(s) 669, 4419
BstBI TTCGAA 1 cut(s) 4285
BstDSI CCRYGG 2 cut(s) 3135, 4989
BstFNI CGCG 4 cut(s) 774, 810, 4365, 4524
BstH2I RGCGCY 1 cut(s) 4166
BstHHI GCGC 8 cut(s) 615, 774, 810, 3348, 4165, 4365, 4524, 5078
BstMAI GTCTC 8 cut(s) 783, 906, 1085, 1852, 2879, 3726, 4835, 5261
BstMWI GCNNNNNNNGC 5 cut(s) 1255, 1759, 2066, 2387, 3055
BstNSI RCATGY 9 cut(s) 247, 583, 1156, 1360, 1710, 1766, 2377, 2950, 3154
BstPAI GACNNNNGTC 1 cut(s) 1722
BstSFI CTRYAG 7 cut(s) 1690, 1959, 4296, 4426, 4608, 4890, 5260
BstSLI GKGCMC 1 cut(s) 3935
BstUI CGCG 4 cut(s) 774, 810, 4365, 4524
BstV2I GAAGAC 1 cut(s) 3919
BstX2I RGATCY 6 cut(s) 1040, 1885, 2834, 3856, 4663, 5156
BstXI CCANNNNNNTGG 1 cut(s) 3703
BstYI RGATCY 6 cut(s) 1040, 1885, 2834, 3856, 4663, 5156
BstZ17I GTATAC 1 cut(s) 5353
Bsu15I ATCGAT 1 cut(s) 2283
BsuI GTATCC 4 cut(s) 926, 2208, 2720, 3829
BsuRI GGCC 8 cut(s) 658, 1404, 2452, 3198, 3500, 3791, 4408, 4780
BsuTUI ATCGAT 1 cut(s) 2283
BtgI CCRYGG 2 cut(s) 3135, 4989
BtgZI GCGATG 3 cut(s) 825, 3399, 3459
BtrI CACGTC 1 cut(s) 4178
BtsI GCAGTG 3 cut(s) 1654, 3975, 4762
BveI ACCTGC 5 cut(s) 1055, 1757, 2849, 4351, 5015
CciI TCATGA 7 cut(s) 64, 1015, 1579, 3781, 4765, 5269, 5404
CfoI GCGC 8 cut(s) 615, 774, 810, 3348, 4165, 4365, 4524, 5078
Cfr10I RCCGGY 1 cut(s) 4031
Cfr13I GGNCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
ClaI ATCGAT 1 cut(s) 2283
CsiI ACCWGGT 2 cut(s) 4591, 5245
CspCI CAANNNNNGTGG 4 cut(s) 354, 389, 4104, 4139
DraI TTTAAA 1 cut(s) 2091
DriI GACNNNNNGTC 1 cut(s) 2361
EaeI YGGCCR 5 cut(s) 656, 1402, 2450, 3196, 4406
Eam1104I CTCTTC 6 cut(s) 1329, 1637, 3123, 3428, 3431, 5079
Eam1105I GACNNNNNGTC 1 cut(s) 2361
EarI CTCTTC 6 cut(s) 1329, 1637, 3123, 3428, 3431, 5079
EciI GGCGGA 1 cut(s) 4116
Eco130I CCWWGG 6 cut(s) 30, 1259, 3053, 3135, 5009, 5038
Eco24I GRGCYC 5 cut(s) 975, 3135, 3695, 3710, 4725
Eco31I GGTCTC 2 cut(s) 2879, 3726
Eco47I GGWCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
Eco57I CTGAAG 3 cut(s) 287, 5133, 5215
EcoO109I RGGNCCY 2 cut(s) 649, 4791
EcoT14I CCWWGG 6 cut(s) 30, 1259, 3053, 3135, 5009, 5038
EcoT22I ATGCAT 2 cut(s) 1975, 3925
EcoT38I GRGCYC 5 cut(s) 975, 3135, 3695, 3710, 4725
ErhI CCWWGG 6 cut(s) 30, 1259, 3053, 3135, 5009, 5038
Esp3I CGTCTC 1 cut(s) 1852
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 3479, 3511
FaqI GGGAC 9 cut(s) 962, 1048, 1495, 1700, 2384, 2842, 3494, 4712, 5390
FauI CCCGC 3 cut(s) 344, 2138, 2395
FauNDI CATATG 3 cut(s) 221, 2015, 4672
FbaI TGATCA 5 cut(s) 309, 862, 870, 2103, 4318
FblI GTMKAC 3 cut(s) 2365, 4476, 5352
FriOI GRGCYC 5 cut(s) 975, 3135, 3695, 3710, 4725
FspBI CTAG 5 cut(s) 384, 636, 1085, 1914, 2231
FspI TGCGCA 1 cut(s) 3347
GlaI GCGC 8 cut(s) 614, 773, 809, 3347, 4164, 4364, 4523, 5077
GsuI CTGGAG 8 cut(s) 183, 184, 531, 1210, 2325, 2530, 3004, 4960
HaeII RGCGCY 1 cut(s) 4166
HaeIII GGCC 8 cut(s) 658, 1404, 2452, 3198, 3500, 3791, 4408, 4780
HapII CCGG 8 cut(s) 753, 842, 1038, 1479, 2142, 2637, 2832, 4032
HhaI GCGC 8 cut(s) 615, 774, 810, 3348, 4165, 4365, 4524, 5078
Hin6I GCGC 8 cut(s) 613, 772, 808, 3346, 4163, 4363, 4522, 5076
HinP1I GCGC 8 cut(s) 613, 772, 808, 3346, 4163, 4363, 4522, 5076
HincII GTYRAC 4 cut(s) 1243, 2366, 3283, 3621
HindII GTYRAC 4 cut(s) 1243, 2366, 3283, 3621
HindIII AAGCTT 4 cut(s) 2474, 3158, 3535, 5104
HpaI GTTAAC 1 cut(s) 3621
HpaII CCGG 8 cut(s) 753, 842, 1038, 1479, 2142, 2637, 2832, 4032
Hpy99I CGWCG 3 cut(s) 13, 2370, 5345
HpyCH4IV ACGT 4 cut(s) 2566, 4177, 4771, 4854
HpyF10VI GCNNNNNNNGC 5 cut(s) 1255, 1759, 2066, 2387, 3055
HpySE526I ACGT 4 cut(s) 2566, 4177, 4771, 4854
HspAI GCGC 8 cut(s) 613, 772, 808, 3346, 4163, 4363, 4522, 5076
Ksp22I TGATCA 5 cut(s) 309, 862, 870, 2103, 4318
KspAI GTTAAC 1 cut(s) 3621
LguI GCTCTTC 5 cut(s) 1329, 1637, 3123, 3431, 5079
MabI ACCWGGT 2 cut(s) 4591, 5245
MaeI CTAG 5 cut(s) 384, 636, 1085, 1914, 2231
MaeII ACGT 4 cut(s) 2566, 4177, 4771, 4854
MbiI CCGCTC 1 cut(s) 1792
MfeI CAATTG 1 cut(s) 2099
MflI RGATCY 6 cut(s) 1040, 1885, 2834, 3856, 4663, 5156
MhlI GDGCHC 8 cut(s) 975, 3135, 3695, 3710, 3721, 3935, 4600, 4725
MlsI TGGCCA 4 cut(s) 658, 1404, 2452, 4408
MluNI TGGCCA 4 cut(s) 658, 1404, 2452, 4408
MlyI GAGTC 6 cut(s) 191, 755, 2564, 3779, 3909, 5263
MmeI TCCRAC 6 cut(s) 1299, 1326, 1492, 3874, 5182, 5231
Mox20I TGGCCA 4 cut(s) 658, 1404, 2452, 4408
Mph1103I ATGCAT 2 cut(s) 1975, 3925
MroXI GAANNNNTTC 2 cut(s) 4248, 4810
MscI TGGCCA 4 cut(s) 658, 1404, 2452, 4408
MseI TTAA 7 cut(s) 644, 1611, 2090, 3620, 3753, 4631, 5178
MslI CAYNNNNRTG 9 cut(s) 69, 220, 1164, 1416, 1767, 1836, 3928, 3970, 4770
Msp20I TGGCCA 4 cut(s) 658, 1404, 2452, 4408
MspA1I CMGCKG 2 cut(s) 2882, 4301
MspI CCGG 8 cut(s) 753, 842, 1038, 1479, 2142, 2637, 2832, 4032
MunI CAATTG 1 cut(s) 2099
Mva1269I GAATGC 1 cut(s) 5297
MvnI CGCG 4 cut(s) 774, 810, 4365, 4524
MwoI GCNNNNNNNGC 5 cut(s) 1255, 1759, 2066, 2387, 3055
NciI CCSGG 4 cut(s) 753, 843, 1480, 2637
NcoI CCATGG 1 cut(s) 3135
NdeI CATATG 3 cut(s) 221, 2015, 4672
NheI GCTAGC 1 cut(s) 1084
NmeAIII GCCGAG 1 cut(s) 3767
NmuCI GTSAC 7 cut(s) 1526, 1903, 2257, 2582, 3847, 4538, 4625
NsbI TGCGCA 1 cut(s) 3347
NsiI ATGCAT 2 cut(s) 1975, 3925
NspI RCATGY 9 cut(s) 247, 583, 1156, 1360, 1710, 1766, 2377, 2950, 3154
NspV TTCGAA 1 cut(s) 4285
OliI CACNNNNGTG 1 cut(s) 1164
PaeI GCATGC 3 cut(s) 1360, 1710, 1766
PagI TCATGA 7 cut(s) 64, 1015, 1579, 3781, 4765, 5269, 5404
PaqCI CACCTGC 4 cut(s) 1055, 1757, 2849, 4351
PciI ACATGT 2 cut(s) 243, 2373
PciSI GCTCTTC 5 cut(s) 1329, 1637, 3123, 3431, 5079
PcsI WCGNNNNNNNCGW 1 cut(s) 4239
PctI GAATGC 1 cut(s) 5297
PdmI GAANNNNTTC 2 cut(s) 4248, 4810
PflMI CCANNNNNTGG 3 cut(s) 2546, 3944, 4502
PfoI TCCNGGA 3 cut(s) 1478, 3907, 4501
PleI GAGTC 6 cut(s) 191, 755, 2563, 3779, 3909, 5262
PpsI GAGTC 6 cut(s) 191, 755, 2563, 3779, 3909, 5262
PpuMI RGGWCCY 2 cut(s) 649, 4791
PscI ACATGT 2 cut(s) 243, 2373
PshAI GACNNNNGTC 1 cut(s) 1722
PsiI TTATAA 1 cut(s) 4061
Psp5II RGGWCCY 2 cut(s) 649, 4791
PspPI GGNCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
PspPPI RGGWCCY 2 cut(s) 649, 4791
PstI CTGCAG 2 cut(s) 1963, 4300
PsuI RGATCY 6 cut(s) 1040, 1885, 2834, 3856, 4663, 5156
PvuII CAGCTG 2 cut(s) 2882, 4301
RseI CAYNNNNRTG 9 cut(s) 69, 220, 1164, 1416, 1767, 1836, 3928, 3970, 4770
SalI GTCGAC 1 cut(s) 2364
SapI GCTCTTC 5 cut(s) 1329, 1637, 3123, 3431, 5079
SaqAI TTAA 7 cut(s) 644, 1611, 2090, 3620, 3753, 4631, 5178
Sau96I GGNCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
SchI GAGTC 6 cut(s) 191, 755, 2564, 3779, 3909, 5263
SduI GDGCHC 8 cut(s) 975, 3135, 3695, 3710, 3721, 3935, 4600, 4725
SexAI ACCWGGT 2 cut(s) 4591, 5245
SfcI CTRYAG 7 cut(s) 1690, 1959, 4296, 4426, 4608, 4890, 5260
SfuI TTCGAA 1 cut(s) 4285
SinI GGWCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
SmiMI CAYNNNNRTG 9 cut(s) 69, 220, 1164, 1416, 1767, 1836, 3928, 3970, 4770
SmlI CTYRAG 5 cut(s) 435, 1681, 3475, 3860, 4185
SmoI CTYRAG 5 cut(s) 435, 1681, 3475, 3860, 4185
SpeI ACTAGT 1 cut(s) 635
SphI GCATGC 3 cut(s) 1360, 1710, 1766
SsiI CCGC 8 cut(s) 22, 351, 1790, 2145, 2382, 2388, 4101, 5073
SspI AATATT 3 cut(s) 3660, 4533, 4880
SspMI CTAG 5 cut(s) 384, 636, 1085, 1914, 2231
StyI CCWWGG 6 cut(s) 30, 1259, 3053, 3135, 5009, 5038
TaiI ACGT 4 cut(s) 2569, 4180, 4774, 4857
TaqII GACCGA 1 cut(s) 674
TauI GCSGC 4 cut(s) 24, 1792, 2384, 5076
Tru1I TTAA 7 cut(s) 644, 1611, 2090, 3620, 3753, 4631, 5178
Tru9I TTAA 7 cut(s) 644, 1611, 2090, 3620, 3753, 4631, 5178
TseFI GTSAC 7 cut(s) 1526, 1903, 2257, 2582, 3847, 4538, 4625
Tsp45I GTSAC 7 cut(s) 1526, 1903, 2257, 2582, 3847, 4538, 4625
TspGWI ACGGA 5 cut(s) 1834, 3300, 4818, 4978, 5196
Van91I CCANNNNNTGG 3 cut(s) 2546, 3944, 4502
VpaK11BI GGWCC 7 cut(s) 587, 649, 949, 1035, 2829, 4699, 4791
XapI RAATTY 9 cut(s) 661, 1214, 1538, 2455, 2921, 3008, 3568, 4135, 5174
XceI RCATGY 9 cut(s) 247, 583, 1156, 1360, 1710, 1766, 2377, 2950, 3154
XcmI CCANNNNNNNNNTGG 4 cut(s) 1508, 3302, 4260, 5198
XmiI GTMKAC 3 cut(s) 2365, 4476, 5352
XmnI GAANNNNTTC 2 cut(s) 4248, 4810
XspI CTAG 5 cut(s) 384, 636, 1085, 1914, 2231
Zsp2I ATGCAT 2 cut(s) 1975, 3925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.