RchiOBHm_Chr7g0190241

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001351
Physical Location & Seq
Forward (+)
9369601 .. 9372497
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16989

Sequence Viewer

Length: 1446 bp
ATGGCCTGGAGAGCTTCAGCTTCTTCTTTTCATAGTCACAATAAGCATGGAGGTGATGGGGTACAGCCACTGTCCAAGATTCAAATCCAGAGAGATGTTTATAAGCTTCATGAAAATGCTTCTGTCACGGCAAACCCAGTCCTTCTTGGCACCAAGGGGGAAGATTCTCAATGGGTAACGGTGGAAGTTGGCACTCCCAAGCCTTCTGAAGTTGATTGGTTGGCAGTCTTTTCTCCTGCAAATTTCAAGTATTACAGGTTTGCCAATGATTCCAATTCTGATTATTCAAAGACAGGAAAAACATCTTTAAAATTTCAATTGATCAATCAAAGGGAAGATTTTTCATTTGCATTATTCTCCGGTGGGCTGTCAAATCCAAAACTGGTAGCTGTTTCTAATGTTATAACTTTTGCAAATCCAAAGGCACCCCTTTACCCCCGTCTTGCTCTAGGGCAGCACTGGGATGAAATGACAGTGACCTGGACAAGCGGCTATAATATTGATGAAGCTGTACCTCTTGTTGAATATTGGGGTATCAAGGGAGAGTCTCAAACTAGCTCTCCAGCAGGAACATTAACTTTTACTCGAGAGACCATGTGCGGTCCACCAGCCCGAACAGTTGGCTGGCGCGATCCTGGTTTCATCCACACAGGTTTTCTGAAAGATTTGTGGCCAAATTCTTTGTACACTTACAAGCTTGGCCATAGTTTATCTAATAGTTCTTATATCTGGAGCAAGTCCTACTCTTTCAAGTCATCACCTTATCCTGGGCAGGACTCATTGCAGCATGTTGTTATGTTTGGTGACATGGGAAAGGCCGAGCGTGACGGCTCTAACGAATATGCTGATTATCAGCCCGGATCTCTCATTACCAGGGATCAACTGGTCAAGGAGTTGGATGGAGTTGACATAGTTTTTCACATAGGAGATATGGCCTATTCCAATGGATACATCTCACAGTGGGATCAGTTCACATCGCAGGTGAAGCCGATTGCATCAACTGTACCATATATGGTTGCAAGGTACTCAACAGATTATGGAAAGTTCCACTTCTGCATAGCAGACAGTGAGCATGATTGGAGAGAAGGTTCAGAGCTGTACAAATTCATTGAGAAATGCCTTGCATCGGCTGACAGGCAGAAACAGCCTTGGCTGATTTTCGCTGCTCATCGCGTTCTTGGTTATTCCTCGGCTTATTGGAATGATGGTTCTTTTGGAGAACCAATGGCAAGGGAAAACTTACAAAAGCTTTGGCAGAAGTGCAAGGTGGACATTGCATTTTTCGGCCATATCCACAACTATGAAAGAACATGCCCAATTTATCAGAACCAGTGTGTGAACTCGGAAACATCTCATTATTCCGGAACTGTGAATGGAACAATCCATGCAGTTGTTGGTGGAGGAGCTAGGGAGCCACTTATCAGGTTTCGGACCAGTGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

481

Amino Acids

54.05

Weight (kDa)

6.6

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_PAP PF17808 42 - 83 8.5e-10 Fn3-like domain from Purple Acid Phosphatase
fn3_PAP PF17808 85 - 139 7.8e-19 Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N PF16656 145 - 251 3.1e-13 Purple acid Phosphatase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 102, 404
AarI CACCTGC 1 cut(s) 970
Acc36I ACCTGC 1 cut(s) 970
AccB1I GGYRCC 2 cut(s) 149, 424
AccII CGCG 2 cut(s) 630, 1173
AccIII TCCGGA 1 cut(s) 1361
AciI CCGC 2 cut(s) 489, 600
AclWI GGATC 4 cut(s) 626, 868, 885, 972
AcoI YGGCCR 3 cut(s) 671, 700, 1285
AcsI RAATTY 4 cut(s) 241, 311, 676, 1103
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 6 cut(s) 63, 513, 686, 1005, 1025, 1100
AfiI CCNNNNNNNGG 2 cut(s) 767, 1126
AgsI TTSAA 6 cut(s) 83, 247, 288, 317, 524, 751
AjnI CCWGG 5 cut(s) 5, 479, 634, 766, 872
AloI GAACNNNNNNTCC 4 cut(s) 1072, 1104, 1192, 1224
Alw26I GTCTC 2 cut(s) 552, 584
AlwI GGATC 4 cut(s) 626, 868, 885, 972
AlwNI CAGNNNCTG 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 585
Aor13HI TCCGGA 1 cut(s) 1361
AoxI GGCC 6 cut(s) 3, 671, 700, 816, 933, 1285
ApeKI GCWGC 3 cut(s) 454, 784, 1163
ApoI RAATTY 4 cut(s) 241, 311, 676, 1103
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 2 cut(s) 602, 1431
AsuC2I CCSGG 1 cut(s) 858
AsuHPI GGTGA 4 cut(s) 65, 750, 815, 994
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 2 cut(s) 602, 1431
BalI TGGCCA 2 cut(s) 673, 702
BanI GGYRCC 2 cut(s) 149, 424
BbvI GCAGC 3 cut(s) 466, 796, 1150
BccI CCATC 3 cut(s) 50, 893, 1199
BceAI ACGGC 2 cut(s) 144, 844
BciT130I CCWGG 5 cut(s) 7, 481, 636, 768, 874
BciVI GTATCC 1 cut(s) 941
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 858
BcoDI GTCTC 2 cut(s) 552, 584
BfaI CTAG 3 cut(s) 449, 555, 1407
BfuAI ACCTGC 1 cut(s) 970
BfuI GTATCC 1 cut(s) 941
BisI GCNGC 4 cut(s) 455, 490, 785, 1164
BlsI GCNGC 4 cut(s) 456, 491, 786, 1165
Bme1390I CCNGG 6 cut(s) 7, 481, 636, 768, 858, 874
Bme18I GGWCC 2 cut(s) 602, 1431
BmeT110I CYCGRG 1 cut(s) 585
BmgT120I GGNCC 2 cut(s) 602, 1431
BmiI GGNNCC 3 cut(s) 151, 426, 1413
BmrFI CCNGG 6 cut(s) 7, 481, 636, 768, 858, 874
BmrI ACTGGG 2 cut(s) 131, 469
BmsI GCATC 2 cut(s) 1004, 1133
BmuI ACTGGG 2 cut(s) 131, 469
BpmI CTGGAG 3 cut(s) 28, 546, 751
BpuMI CCSGG 1 cut(s) 858
BsaBI GATNNNNATC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 5 cut(s) 153, 767, 873, 1148, 1188
BsaWI WCCGGW 2 cut(s) 359, 1361
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 1072, 1102
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 1126
Bse1I ACTGG 6 cut(s) 137, 387, 464, 888, 1330, 1434
Bse3DI GCAATG 2 cut(s) 779, 1272
Bse8I GATNNNNATC 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 1361
BseBI CCWGG 5 cut(s) 7, 481, 636, 768, 874
BseDI CCNNGG 5 cut(s) 153, 767, 873, 1148, 1188
BseGI GGATG 3 cut(s) 469, 642, 904
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 767, 1126
BseMI GCAATG 2 cut(s) 779, 1272
BseNI ACTGG 6 cut(s) 137, 387, 464, 888, 1330, 1434
BseRI GAGGAG 1 cut(s) 1416
BseXI GCAGC 3 cut(s) 466, 796, 1150
Bsh1236I CGCG 2 cut(s) 630, 1173
BshFI GGCC 6 cut(s) 5, 673, 702, 818, 935, 1287
BshNI GGYRCC 2 cut(s) 149, 424
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 3 cut(s) 360, 858, 1362
BslI CCNNNNNNNGG 2 cut(s) 767, 1126
BsmAI GTCTC 2 cut(s) 552, 584
BsnI GGCC 6 cut(s) 5, 673, 702, 818, 935, 1287
Bso31I GGTCTC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 585
Bsp13I TCCGGA 1 cut(s) 1361
Bsp1407I TGTACA 2 cut(s) 684, 1098
Bsp143I GATC 5 cut(s) 321, 631, 860, 877, 964
BspACI CCGC 2 cut(s) 489, 600
BspANI GGCC 6 cut(s) 5, 673, 702, 818, 935, 1287
BspEI TCCGGA 1 cut(s) 1361
BspFNI CGCG 2 cut(s) 630, 1173
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 151, 426, 1413
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 4 cut(s) 626, 868, 885, 972
BspT107I GGYRCC 2 cut(s) 149, 424
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 779, 1272
BsrGI TGTACA 2 cut(s) 684, 1098
BsrI ACTGG 6 cut(s) 137, 387, 464, 888, 1330, 1434
BssECI CCNNGG 5 cut(s) 153, 767, 873, 1148, 1188
BssMI GATC 5 cut(s) 321, 631, 860, 877, 964
BssT1I CCWWGG 2 cut(s) 153, 1148
Bst2UI CCWGG 5 cut(s) 7, 481, 636, 768, 874
Bst4CI ACNGT 8 cut(s) 72, 181, 475, 619, 960, 1003, 1067, 1369
BstAUI TGTACA 2 cut(s) 684, 1098
BstC8I GCNNGC 1 cut(s) 626
BstF5I GGATG 3 cut(s) 469, 642, 904
BstFNI CGCG 2 cut(s) 630, 1173
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 5 cut(s) 324, 634, 863, 880, 967
BstMAI GTCTC 2 cut(s) 552, 584
BstMBI GATC 5 cut(s) 321, 631, 860, 877, 964
BstMWI GCNNNNNNNGC 3 cut(s) 11, 985, 1144
BstNI CCWGG 5 cut(s) 7, 481, 636, 768, 874
BstNSI RCATGY 2 cut(s) 791, 1314
BstSCI CCNGG 6 cut(s) 5, 479, 634, 766, 856, 872
BstUI CGCG 2 cut(s) 630, 1173
BstV1I GCAGC 3 cut(s) 466, 796, 1150
BstX2I RGATCY 1 cut(s) 860
BstYI RGATCY 1 cut(s) 860
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 6 cut(s) 5, 673, 702, 818, 935, 1287
BtgZI GCGATG 2 cut(s) 960, 1154
BtsCI GGATG 3 cut(s) 469, 642, 904
BtsI GCAGTG 1 cut(s) 1446
BtsIMutI CAGTG 8 cut(s) 68, 457, 480, 965, 1072, 1337, 1441, 1446
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 1 cut(s) 626
CaiI CAGNNNCTG 1 cut(s) 70
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 2 cut(s) 602, 1431
Csp6I GTAC 6 cut(s) 62, 512, 685, 1004, 1024, 1099
CviAII CATG 8 cut(s) 47, 110, 595, 788, 808, 1073, 1311, 1385
CviQI GTAC 6 cut(s) 62, 512, 685, 1004, 1024, 1099
DpnI GATC 5 cut(s) 323, 633, 862, 879, 966
DpnII GATC 5 cut(s) 321, 631, 860, 877, 964
DraI TTTAAA 1 cut(s) 309
EaeI YGGCCR 3 cut(s) 671, 700, 1285
Eco130I CCWWGG 2 cut(s) 153, 1148
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 602, 1431
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 585
EcoRII CCWGG 5 cut(s) 5, 479, 634, 766, 872
EcoT14I CCWWGG 2 cut(s) 153, 1148
ErhI CCWWGG 2 cut(s) 153, 1148
FaeI CATG 8 cut(s) 50, 113, 598, 791, 811, 1076, 1314, 1388
FalI AAGNNNNNCTT 2 cut(s) 1034, 1066
FatI CATG 8 cut(s) 46, 109, 594, 787, 807, 1072, 1310, 1384
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 455, 490, 785, 1164
FokI GGATG 3 cut(s) 476, 629, 911
Fsp4HI GCNGC 4 cut(s) 455, 490, 785, 1164
FspBI CTAG 3 cut(s) 449, 555, 1407
GlaI GCGC 1 cut(s) 629
GluI GCNGC 4 cut(s) 455, 490, 785, 1164
GsuI CTGGAG 3 cut(s) 28, 546, 751
HaeIII GGCC 6 cut(s) 5, 673, 702, 818, 935, 1287
HapII CCGG 3 cut(s) 360, 858, 1362
HhaI GCGC 1 cut(s) 630
Hin1II CATG 8 cut(s) 50, 113, 598, 791, 811, 1076, 1314, 1388
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HindIII AAGCTT 3 cut(s) 104, 695, 1247
HinfI GANTC 5 cut(s) 79, 164, 269, 545, 776
HpaII CCGG 3 cut(s) 360, 858, 1362
HphI GGTGA 4 cut(s) 65, 750, 815, 994
Hpy166II GTNNAC 6 cut(s) 605, 687, 907, 972, 1270, 1339
Hpy188I TCNGA 7 cut(s) 208, 280, 660, 1093, 1326, 1345, 1431
Hpy188III TCNNGA 5 cut(s) 88, 110, 587, 730, 1362
Hpy8I GTNNAC 6 cut(s) 605, 687, 907, 972, 1270, 1339
HpyAV CCTTC 3 cut(s) 152, 213, 1079
HpyCH4III ACNGT 8 cut(s) 72, 181, 475, 619, 960, 1003, 1067, 1369
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 985, 1144
Hsp92II CATG 8 cut(s) 50, 113, 598, 791, 811, 1076, 1314, 1388
HspAI GCGC 1 cut(s) 628
Kpn2I TCCGGA 1 cut(s) 1361
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 5 cut(s) 321, 631, 860, 877, 964
LmnI GCTCC 3 cut(s) 732, 1403, 1411
Lsp1109I GCAGC 3 cut(s) 466, 796, 1150
LweI GCATC 2 cut(s) 1004, 1133
MaeI CTAG 3 cut(s) 449, 555, 1407
MaeIII GTNAC 6 cut(s) 35, 124, 175, 475, 803, 824
MalI GATC 5 cut(s) 323, 633, 862, 879, 966
MboI GATC 5 cut(s) 321, 631, 860, 877, 964
MboII GAAGA 3 cut(s) 15, 173, 347
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 1 cut(s) 860
MlsI TGGCCA 2 cut(s) 673, 702
MluCI AATT 7 cut(s) 241, 274, 311, 317, 676, 1103, 1317
MluNI TGGCCA 2 cut(s) 673, 702
MlyI GAGTC 2 cut(s) 554, 770
MmeI TCCRAC 1 cut(s) 876
MnlI CCTC 4 cut(s) 44, 525, 1198, 1394
Mox20I TGGCCA 2 cut(s) 673, 702
MroI TCCGGA 1 cut(s) 1361
MscI TGGCCA 2 cut(s) 673, 702
MseI TTAA 2 cut(s) 308, 575
MslI CAYNNNNRTG 4 cut(s) 51, 114, 462, 1299
Msp20I TGGCCA 2 cut(s) 673, 702
MspI CCGG 3 cut(s) 360, 858, 1362
MspR9I CCNGG 6 cut(s) 7, 481, 636, 768, 858, 874
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 5 cut(s) 7, 481, 636, 768, 874
MvnI CGCG 2 cut(s) 630, 1173
MwoI GCNNNNNNNGC 3 cut(s) 11, 985, 1144
NciI CCSGG 1 cut(s) 858
NdeII GATC 5 cut(s) 321, 631, 860, 877, 964
NlaIII CATG 8 cut(s) 50, 113, 598, 791, 811, 1076, 1314, 1388
NlaIV GGNNCC 3 cut(s) 151, 426, 1413
NmeAIII GCCGAG 2 cut(s) 844, 1169
NmuCI GTSAC 5 cut(s) 35, 124, 475, 803, 824
NspI RCATGY 2 cut(s) 791, 1314
PaeR7I CTCGAG 1 cut(s) 585
PagI TCATGA 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 970
PcsI WCGNNNNNNNCGW 1 cut(s) 834
PfeI GAWTC 3 cut(s) 79, 164, 269
PkrI GCNGC 4 cut(s) 456, 491, 786, 1165
PleI GAGTC 2 cut(s) 553, 770
PpsI GAGTC 2 cut(s) 553, 770
PsiI TTATAA 2 cut(s) 102, 404
Psp6I CCWGG 5 cut(s) 5, 479, 634, 766, 872
PspGI CCWGG 5 cut(s) 5, 479, 634, 766, 872
PspN4I GGNNCC 3 cut(s) 151, 426, 1413
PspPI GGNCC 2 cut(s) 602, 1431
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 860
RsaI GTAC 6 cut(s) 63, 513, 686, 1005, 1025, 1100
RsaNI GTAC 6 cut(s) 62, 512, 685, 1004, 1024, 1099
RseI CAYNNNNRTG 4 cut(s) 51, 114, 462, 1299
SaqAI TTAA 2 cut(s) 308, 575
SatI GCNGC 4 cut(s) 455, 490, 785, 1164
Sau3AI GATC 5 cut(s) 321, 631, 860, 877, 964
Sau96I GGNCC 2 cut(s) 602, 1431
SchI GAGTC 2 cut(s) 554, 770
ScrFI CCNGG 6 cut(s) 7, 481, 636, 768, 858, 874
SfaNI GCATC 2 cut(s) 1004, 1133
Sfr274I CTCGAG 1 cut(s) 585
SinI GGWCC 2 cut(s) 602, 1431
SlaI CTCGAG 1 cut(s) 585
SmiMI CAYNNNNRTG 4 cut(s) 51, 114, 462, 1299
SmlI CTYRAG 1 cut(s) 585
SmoI CTYRAG 1 cut(s) 585
Sse9I AATT 7 cut(s) 241, 274, 311, 317, 676, 1103, 1317
SsiI CCGC 2 cut(s) 489, 600
SspI AATATT 2 cut(s) 499, 527
SspMI CTAG 3 cut(s) 449, 555, 1407
StyD4I CCNGG 6 cut(s) 5, 479, 634, 766, 856, 872
StyI CCWWGG 2 cut(s) 153, 1148
TaaI ACNGT 8 cut(s) 72, 181, 475, 619, 960, 1003, 1067, 1369
TaqI TCGA 1 cut(s) 586
TasI AATT 7 cut(s) 241, 274, 311, 317, 676, 1103, 1317
TatI WGTACW 2 cut(s) 684, 1098
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 3 cut(s) 79, 164, 269
Tru1I TTAA 2 cut(s) 308, 575
Tru9I TTAA 2 cut(s) 308, 575
TscAI CASTG 8 cut(s) 75, 464, 480, 965, 1072, 1337, 1441, 1446
TseFI GTSAC 5 cut(s) 35, 124, 475, 803, 824
TseI GCWGC 3 cut(s) 454, 784, 1163
Tsp45I GTSAC 5 cut(s) 35, 124, 475, 803, 824
TspDTI ATGAA 9 cut(s) 20, 98, 126, 333, 480, 519, 631, 1096, 1317
TspRI CASTG 8 cut(s) 75, 464, 480, 965, 1072, 1337, 1441, 1446
VpaK11BI GGWCC 2 cut(s) 602, 1431
XapI RAATTY 4 cut(s) 241, 311, 676, 1103
XceI RCATGY 2 cut(s) 791, 1314
XcmI CCANNNNNNNNNTGG 2 cut(s) 880, 1391
XhoI CTCGAG 1 cut(s) 585
XspI CTAG 3 cut(s) 449, 555, 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.