Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005487.1

Orthogroup ID

OG0001351

Physical Location & Seq

Genomic Coordinates Reverse (-)

49175 .. 51299

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005487.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atgcagccgaaattggtggcggtttctaacaatgtaacctttgcgtatccgaaggctcccctttatcctcgccttgctctagggaagctctgggatgaaatgacagtgacttggacaagtggatataacatcgatgaagctgtacctttagttgagtggggtttagagggagagcctcaaactcgatctccagcaggaacattgactttcagtcgacgggacatgtgtgccgcacccgcacgaacagttggttggcgtgatcctggtttcatccatacaagttttctaaaagatttgtggccaaattcagtgtactcttacaagcttggtcataggttatctaatggttcctatatctggagcaaggcttactctttcaagtcatcaccatatcctgggcaggagtcattgcagcgtgttattatatttggtgacatgggaaaagctgagcgtgatggttcaaatgaatatgctgattatcagcccggctcactcaacaccacagatcagctaatcaaggacttggacaacattgacatagtttttcacataggagatatggcttatgccaatggatacatctcacagtgggatcagttcacatcacaggtggagccgatttcatcagttgtaccatatatgattgcgagtggcaaccatgaacaagatacaacagggaccggatccttctacaacactaatgatgcaggtggcgaatgtggtgtaccagctgagaccatgtattatgttcctgctgagaacagagctaaattctggtatgcaacagattatggcatgttccacttctgtatagctgacactgagcatgactggagagaaggttctgagcagtataaatttattgagaaatgccttgcatctgccaacaggcacaagcagccttggctgatattcgctgctcatcgtgttctcggttattcctctaactcttggtatggacaagagggttcatttgatgagcccatgggaagggatgacatgcaaaagctttggcaaagatacaaggtggacattgcattttacggccatgtccataactacgaaagaatatgccccatctatcagaaccagtgtgtaacttcggaaatctctaactattccggaactgtcaacggaacaatccatgttgttgttggtggaggaggcagccacttatcagattttagttcgctgcacacagtttggagcatttaccgagatcgagattatggttatacgaaactcacagcatataaccactcatcgcttctcttggagtacatgaagagcagcgatggaaaggtctatgattcattcaccatctcaagggactacagggatgtcttggcctgtgttcatgatggttgtgaaccaaccaccttagctacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005623 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0044237 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

463

Amino Acids

52.42

Weight (kDa)

5.36

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24890 AT5G50400 AT5G50400
fragaria_vesca	FvH4_5g08240 FvH4_5g08241 FvH4_5g08282 FvH4_5g08283 FvH4_5g08284
malus_domestica	MD06G1142200.v1.1 MD06G1142300.v1.1 MD06G1142400.v1.1 MD14G1157600.v1.1
prunus_persica	Prupe.5G151400_v2.0.a1 Prupe.5G151500_v2.0.a1 Prupe.5G151600_v2.0.a1
pyrus_communis	pycom06g13200 pycom06g13210 pycom06g13220
rosa_chinensis	RchiOBHm_Chr7g0190231 RchiOBHm_Chr7g0190241 RchiOBHm_Chr7g0190251 RchiOBHm_Chr7g0190261 RchiOBHm_Chr7g0190281
rosa_laevigata	RLG00000004547 RLG00000004549 RLG00000004550 RLG00000004551
rosa_multiflora	Rmu_sc0004886.1_g000021 Rmu_sc0005487.1_g000006 Rmu_sc0031901.1_g000001 Rmu_sc0031902.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264770
rosa_rugosa	Rorug06G0503100.1 Rorug06G0503300 Rorug06G0503400
rosa_samantha	Rh7AG108500 Rh7AG108800 Rh7AG108900 Rh7AG109100 Rh7BG111100 Rh7BG111300 Rh7BG111400 Rh7BG111500 Rh7CG113500 Rh7CG113700 Rh7CG113800 Rh7CG113900 Rh7DG112100
rosa_wichuraiana	Rw7G009410 Rw7G009420 Rw7G009440 Rw7G009450 Rw7G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	1121
AciI	CCGC	3 cut(s)	20, 231, 237
AclWI	GGATC	4 cut(s)	254, 600, 678, 691
AcoI	YGGCCR	2 cut(s)	299, 1045
AcsI	RAATTY	3 cut(s)	304, 770, 857
AfaI	GTAC	5 cut(s)	144, 314, 633, 726, 1280
AfiI	CCNNNNNNNGG	4 cut(s)	357, 395, 990, 1326
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	379, 462
AhdI	GACNNNNNGTC	1 cut(s)	210
AjnI	CCWGG	2 cut(s)	262, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AloI	GAACNNNNNNTCC	2 cut(s)	826, 858
Alw26I	GTCTC	1 cut(s)	728
AlwI	GGATC	4 cut(s)	254, 600, 678, 691
Aor13HI	TCCGGA	1 cut(s)	1121
AoxI	GGCC	3 cut(s)	299, 1045, 1347
ApeKI	GCWGC	7 cut(s)	4, 412, 898, 917, 1167, 1192, 1290
ApoI	RAATTY	3 cut(s)	304, 770, 857
AspS9I	GGNCC	1 cut(s)	678
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	3 cut(s)	378, 443, 1309
AvaII	GGWCC	1 cut(s)	678
BalI	TGGCCA	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	984
BbvI	GCAGC	7 cut(s)	16, 424, 904, 910, 1179, 1179, 1302
BccI	CCATC	5 cut(s)	449, 1085, 1289, 1328, 1355
BceAI	ACGGC	1 cut(s)	1060
BciT130I	CCWGG	2 cut(s)	264, 396
BciVI	GTATCC	2 cut(s)	57, 569
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	1333
BfuAI	ACCTGC	1 cut(s)	698
BfuI	GTATCC	2 cut(s)	57, 569
BisI	GCNGC	8 cut(s)	5, 231, 413, 899, 918, 1168, 1193, 1291
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	8 cut(s)	6, 232, 414, 900, 919, 1169, 1194, 1292
Bme1390I	CCNGG	3 cut(s)	264, 396, 486
Bme18I	GGWCC	1 cut(s)	678
BmeRI	GACNNNNNGTC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	5 cut(s)	57, 349, 615, 679, 685
BmrFI	CCNGG	3 cut(s)	264, 396, 486
BmsI	GCATC	2 cut(s)	694, 887
BpmI	CTGGAG	3 cut(s)	174, 379, 853
Bpu10I	CCTNAGC	1 cut(s)	1381
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	1309
BpuMI	CCSGG	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	395, 902, 984
BsaWI	WCCGGW	2 cut(s)	680, 1121
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 826, 856
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 395, 990, 1326
Bse1I	ACTGG	2 cut(s)	836, 1090
Bse3DI	GCAATG	2 cut(s)	407, 1032
BseAI	TCCGGA	1 cut(s)	1121
BseBI	CCWGG	2 cut(s)	264, 396
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	395, 902, 984
BseGI	GGATG	4 cut(s)	100, 270, 1000, 1345
BseLI	CCNNNNNNNGG	4 cut(s)	357, 395, 990, 1326
BseMI	GCAATG	2 cut(s)	407, 1032
BseMII	CTCAG	5 cut(s)	438, 723, 747, 813, 837
BseNI	ACTGG	2 cut(s)	836, 1090
BseRI	GAGGAG	1 cut(s)	1176
BseXI	GCAGC	7 cut(s)	16, 424, 904, 910, 1179, 1179, 1302
BsgI	GTGCAG	1 cut(s)	1178
BshFI	GGCC	3 cut(s)	301, 1047, 1349
BshVI	ATCGAT	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	486, 681, 1122
BslFI	GGGAC	3 cut(s)	233, 691, 1343
BslI	CCNNNNNNNGG	4 cut(s)	357, 395, 990, 1326
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	3 cut(s)	233, 691, 1343
BsnI	GGCC	3 cut(s)	301, 1047, 1349
Bso31I	GGTCTC	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	984
Bsp13I	TCCGGA	1 cut(s)	1121
Bsp143I	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	984
BspACI	CCGC	3 cut(s)	20, 231, 237
BspANI	GGCC	3 cut(s)	301, 1047, 1349
BspCNI	CTCAG	5 cut(s)	439, 724, 748, 814, 838
BspDI	ATCGAT	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	1121
BspHI	TCATGA	1 cut(s)	1357
BspLI	GGNNCC	5 cut(s)	57, 349, 615, 679, 685
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	4 cut(s)	254, 600, 678, 691
BspQI	GCTCTTC	1 cut(s)	1280
BspTNI	GGTCTC	1 cut(s)	728
BsrDI	GCAATG	2 cut(s)	407, 1032
BsrI	ACTGG	2 cut(s)	836, 1090
BssECI	CCNNGG	3 cut(s)	395, 902, 984
BssMI	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
BssT1I	CCWWGG	2 cut(s)	902, 984
Bst2UI	CCWGG	2 cut(s)	264, 396
Bst4CI	ACNGT	5 cut(s)	106, 247, 588, 1129, 1201
Bst6I	CTCTTC	1 cut(s)	1280
BstDEI	CTNAG	6 cut(s)	447, 732, 756, 822, 846, 1381
BstDSI	CCRYGG	1 cut(s)	984
BstF5I	GGATG	4 cut(s)	100, 270, 1000, 1345
BstKTI	GATC	6 cut(s)	188, 262, 508, 595, 686, 1222
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 898, 904
BstNI	CCWGG	2 cut(s)	264, 396
BstNSI	RCATGY	3 cut(s)	226, 799, 1003
BstSCI	CCNGG	3 cut(s)	262, 394, 484
BstSFI	CTRYAG	1 cut(s)	1333
BstV1I	GCAGC	7 cut(s)	16, 424, 904, 910, 1179, 1179, 1302
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	2 cut(s)	57, 569
BsuRI	GGCC	3 cut(s)	301, 1047, 1349
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	984
BtgZI	GCGATG	2 cut(s)	1248, 1308
BtsCI	GGATG	4 cut(s)	100, 270, 1000, 1345
BtsIMutI	CAGTG	5 cut(s)	111, 315, 593, 819, 1097
BveI	ACCTGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	1357
Cfr13I	GGNCC	1 cut(s)	678
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	143, 313, 632, 725, 1279
CviQI	GTAC	5 cut(s)	143, 313, 632, 725, 1279
DdeI	CTNAG	6 cut(s)	447, 732, 756, 822, 846, 1381
DpnI	GATC	6 cut(s)	187, 261, 507, 594, 685, 1221
DpnII	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
DriI	GACNNNNNGTC	1 cut(s)	210
EaeI	YGGCCR	2 cut(s)	299, 1045
Eam1104I	CTCTTC	1 cut(s)	1280
Eam1105I	GACNNNNNGTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	1280
Eco130I	CCWWGG	2 cut(s)	902, 984
Eco24I	GRGCYC	1 cut(s)	984
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	262, 394
EcoT14I	CCWWGG	2 cut(s)	902, 984
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	2 cut(s)	902, 984
FaqI	GGGAC	3 cut(s)	233, 691, 1343
FauI	CCCGC	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	8 cut(s)	5, 231, 413, 899, 918, 1168, 1193, 1291
FokI	GGATG	4 cut(s)	107, 257, 1007, 1352
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	8 cut(s)	5, 231, 413, 899, 918, 1168, 1193, 1291
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	8 cut(s)	5, 231, 413, 899, 918, 1168, 1193, 1291
GsuI	CTGGAG	3 cut(s)	174, 379, 853
HaeIII	GGCC	3 cut(s)	301, 1047, 1349
HapII	CCGG	3 cut(s)	486, 681, 1122
HincII	GTYRAC	2 cut(s)	215, 1132
HindII	GTYRAC	2 cut(s)	215, 1132
HindIII	AAGCTT	2 cut(s)	323, 1007
HinfI	GANTC	2 cut(s)	404, 1310
HpaII	CCGG	3 cut(s)	486, 681, 1122
HphI	GGTGA	3 cut(s)	378, 443, 1309
Hpy166II	GTNNAC	7 cut(s)	215, 313, 600, 725, 1030, 1132, 1370
Hpy188I	TCNGA	5 cut(s)	51, 847, 1086, 1105, 1180
Hpy188III	TCNNGA	4 cut(s)	358, 1122, 1223, 1358
Hpy8I	GTNNAC	7 cut(s)	215, 313, 600, 725, 1030, 1132, 1370
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	4 cut(s)	46, 697, 833, 984
HpyCH4III	ACNGT	5 cut(s)	106, 247, 588, 1129, 1201
HpyCH4V	TGCA	8 cut(s)	4, 412, 707, 782, 878, 1003, 1037, 1195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 898, 904
HpyF3I	CTNAG	6 cut(s)	447, 732, 756, 822, 846, 1381
Kpn2I	TCCGGA	1 cut(s)	1121
Kzo9I	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
LguI	GCTCTTC	1 cut(s)	1280
LmnI	GCTCC	4 cut(s)	61, 360, 613, 1206
Lsp1109I	GCAGC	7 cut(s)	16, 424, 904, 910, 1179, 1179, 1302
LweI	GCATC	2 cut(s)	694, 887
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	4 cut(s)	34, 106, 431, 1096
MalI	GATC	6 cut(s)	187, 261, 507, 594, 685, 1221
MboI	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
MboII	GAAGA	1 cut(s)	1297
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	984
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	4 cut(s)	11, 304, 770, 857
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	7 cut(s)	78, 160, 186, 952, 958, 1154, 1157
Mox20I	TGGCCA	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	1121
MscI	TGGCCA	1 cut(s)	301
Msp20I	TGGCCA	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	3 cut(s)	486, 681, 1122
MspR9I	CCNGG	3 cut(s)	264, 396, 486
MvaI	CCWGG	2 cut(s)	264, 396
MwoI	GCNNNNNNNGC	3 cut(s)	236, 898, 904
NciI	CCSGG	1 cut(s)	486
NcoI	CCATGG	1 cut(s)	984
NdeII	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
NlaIV	GGNNCC	5 cut(s)	57, 349, 615, 679, 685
NmuCI	GTSAC	2 cut(s)	106, 431
NspI	RCATGY	3 cut(s)	226, 799, 1003
PagI	TCATGA	1 cut(s)	1357
PaqCI	CACCTGC	1 cut(s)	698
PciI	ACATGT	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	1280
PfeI	GAWTC	1 cut(s)	1310
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	8 cut(s)	6, 232, 414, 900, 919, 1169, 1194, 1292
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PscI	ACATGT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	262, 394
PspGI	CCWGG	2 cut(s)	262, 394
PspN4I	GGNNCC	5 cut(s)	57, 349, 615, 679, 685
PspPI	GGNCC	1 cut(s)	678
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	5 cut(s)	144, 314, 633, 726, 1280
RsaNI	GTAC	5 cut(s)	143, 313, 632, 725, 1279
SalI	GTCGAC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	1280
SatI	GCNGC	8 cut(s)	5, 231, 413, 899, 918, 1168, 1193, 1291
Sau3AI	GATC	6 cut(s)	185, 259, 505, 592, 683, 1219
Sau96I	GGNCC	1 cut(s)	678
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	3 cut(s)	264, 396, 486
SduI	GDGCHC	1 cut(s)	984
SfaNI	GCATC	2 cut(s)	694, 887
SfcI	CTRYAG	1 cut(s)	1333
SinI	GGWCC	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	1324
SmoI	CTYRAG	1 cut(s)	1324
Sse9I	AATT	4 cut(s)	11, 304, 770, 857
SsiI	CCGC	3 cut(s)	20, 231, 237
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	3 cut(s)	262, 394, 484
StyI	CCWWGG	2 cut(s)	902, 984
TaaI	ACNGT	5 cut(s)	106, 247, 588, 1129, 1201
TaqI	TCGA	4 cut(s)	132, 184, 214, 1222
TasI	AATT	4 cut(s)	11, 304, 770, 857
TatI	WGTACW	2 cut(s)	312, 1278
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	1310
TscAI	CASTG	5 cut(s)	111, 315, 593, 826, 1097
TseFI	GTSAC	2 cut(s)	106, 431
TseI	GCWGC	7 cut(s)	4, 412, 898, 917, 1167, 1192, 1290
Tsp45I	GTSAC	2 cut(s)	106, 431
TspGWI	ACGGA	1 cut(s)	1149
TspRI	CASTG	5 cut(s)	111, 315, 593, 826, 1097
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	3 cut(s)	304, 770, 857
XceI	RCATGY	3 cut(s)	226, 799, 1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1151
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.