Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001351

Physical Location & Seq

Genomic Coordinates Forward (+)

8588677 .. 8591051

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTTAAGCATTTGAACACTATGGGCCTCTTCAGCTTCTTATCCCAGAAAAGTGCTTTGATGATAGTGGTTTTGTTGGTGCATTTTACACTAGATCATAGTCATGGACACAAATATAAGCATGGAGATGATGCTGCAGCTGGTGATGGAGTACAGCCACTGTCGAAGATTCAAATCCTCAAAGCTGTTTCTCAGCTTCACGAAAATGCTTCCGTCTCTGCGTACCCTGTCCTTCTTGGCACAAAAGGGGAAGATTTTGGGTGGGTAACTGTGACAATTTCTAGTCCTAGTCCTGCACAAGATGATTGGGTGGCAGTTTTTTCTCCTGCAGATTTCAATGCATCGACCTGTCCATACAATGAAGACTACTATGAGCCTTATATATGCACATCTCCTATAAAGTACAAGTTTGCCAATTATTCCAGGGCTGATTATGCAAACACAGGCAATACAACTTTGAAGTTCCGATTGATCAATCAACGGGCAGATTTTTCGTTTGCATTGTTCTCGGGCGGGTTGTCAAACCCGAAATTGGTGGCAGTTTCTAATAATGTAACCTTTGCGTATCTGAAGGCTCCCCTTTACCCTCGTCTTGCTCTAGGGAAGCTCTGGGATGAAATGACAGTGACTTGGACAAGTGGATATAACATAGATGAAGCTGTACCTTTAGTTGAGTGGGGTTTAAAGGGAGAACCTCAAACTCGATCTCCAGCAGGAACATTGACTTTCAGTAGACGGGACATGTGTGCTGCACCTGCACGAACAGTTGGTTGGCGTGATCCTGGTTTCATCCATACAGGTTTTCTAAAAGATTTGTGGCCAAATTCAGTATACTCTTACAAGCTTGGTCATAGGTTATCTAATGGTTCCTATATCTGGAGCAAGGCTTACTCTTTCAAGTCATCACCATATCCTGGGCAGGAGTCATTGCAGCGTGTTATTATATTTGGTGACATGGGAAAAGCTGAGCGTGATGGTTCAAATGAATATGCTGATTATCAGCCCGGCTCACTCAATACCACAGATCAGCTAATCAAGGATTTGGACAACATTGACATAGTTTTTCATATAGGAGATATGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005623 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0044237 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

361

Amino Acids

40.17

Weight (kDa)

6.36

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_PAP	PF17808	72 - 188	6.4e-45	Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N	PF16656	196 - 300	1.5e-12	Purple acid Phosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24890 AT5G50400 AT5G50400
fragaria_vesca	FvH4_5g08240 FvH4_5g08241 FvH4_5g08282 FvH4_5g08283 FvH4_5g08284
malus_domestica	MD06G1142200.v1.1 MD06G1142300.v1.1 MD06G1142400.v1.1 MD14G1157600.v1.1
prunus_persica	Prupe.5G151400_v2.0.a1 Prupe.5G151500_v2.0.a1 Prupe.5G151600_v2.0.a1
pyrus_communis	pycom06g13200 pycom06g13210 pycom06g13220
rosa_chinensis	RchiOBHm_Chr7g0190231 RchiOBHm_Chr7g0190241 RchiOBHm_Chr7g0190251 RchiOBHm_Chr7g0190261 RchiOBHm_Chr7g0190281
rosa_laevigata	RLG00000004547 RLG00000004549 RLG00000004550 RLG00000004551
rosa_multiflora	Rmu_sc0004886.1_g000021 Rmu_sc0005487.1_g000006 Rmu_sc0031901.1_g000001 Rmu_sc0031902.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264770
rosa_rugosa	Rorug06G0503100.1 Rorug06G0503300 Rorug06G0503400
rosa_samantha	Rh7AG108500 Rh7AG108800 Rh7AG108900 Rh7AG109100 Rh7BG111100 Rh7BG111300 Rh7BG111400 Rh7BG111500 Rh7CG113500 Rh7CG113700 Rh7CG113800 Rh7CG113900 Rh7DG112100
rosa_wichuraiana	Rw7G009410 Rw7G009420 Rw7G009440 Rw7G009450 Rw7G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	914
AccI	GTMKAC	2 cut(s)	733, 831
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	773
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	2 cut(s)	16, 590
AfaI	GTAC	4 cut(s)	153, 224, 404, 663
AfiI	CCNNNNNNNGG	3 cut(s)	532, 876, 914
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	6 cut(s)	16, 173, 337, 460, 898, 981
AjnI	CCWGG	3 cut(s)	422, 781, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	754, 786
AluBI	AGCT	9 cut(s)	36, 140, 185, 196, 607, 659, 844, 965, 1030
AluI	AGCT	9 cut(s)	36, 140, 185, 196, 607, 659, 844, 965, 1030
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	773
AlwNI	CAGNNNCTG	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	2 cut(s)	25, 818
ApeKI	GCWGC	4 cut(s)	134, 137, 749, 931
ApoI	RAATTY	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	1005
AsuHPI	GGTGA	3 cut(s)	155, 897, 962
AvaI	CYCGRG	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	820
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	4 cut(s)	121, 149, 736, 943
BccI	CCATC	2 cut(s)	140, 968
BcgI	CGANNNNNNTGC	4 cut(s)	474, 489, 508, 523
BciT130I	CCWGG	3 cut(s)	424, 783, 915
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	1005
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	4 cut(s)	92, 282, 288, 599
BfmI	CTRYAG	2 cut(s)	135, 327
BfuAI	ACCTGC	1 cut(s)	763
BisI	GCNGC	4 cut(s)	135, 138, 750, 932
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	4 cut(s)	136, 139, 751, 933
Bme1390I	CCNGG	4 cut(s)	424, 783, 915, 1005
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	576, 868
BmrFI	CCNGG	4 cut(s)	424, 783, 915, 1005
BmsI	GCATC	2 cut(s)	121, 350
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	2 cut(s)	693, 898
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuMI	CCSGG	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	423, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	532, 876, 914
Bse3DI	GCAATG	1 cut(s)	926
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	3 cut(s)	424, 783, 915
BseDI	CCNNGG	2 cut(s)	423, 914
BseGI	GGATG	2 cut(s)	619, 789
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	532, 876, 914
BseMI	GCAATG	1 cut(s)	926
BseMII	CTCAG	2 cut(s)	206, 957
BseXI	GCAGC	4 cut(s)	121, 149, 736, 943
BsgI	GTGCAG	3 cut(s)	279, 735, 741
BshFI	GGCC	2 cut(s)	27, 820
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	1005
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	3 cut(s)	532, 876, 914
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	2 cut(s)	27, 820
BsoBI	CYCGRG	1 cut(s)	508
Bsp143I	GATC	5 cut(s)	94, 471, 704, 778, 1024
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	2 cut(s)	27, 820
BspCNI	CTCAG	2 cut(s)	205, 958
BspLI	GGNNCC	2 cut(s)	576, 868
BspMAI	CTGCAG	2 cut(s)	139, 331
BspMI	ACCTGC	1 cut(s)	763
BspPI	GGATC	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	926
BssECI	CCNNGG	2 cut(s)	423, 914
BssMI	GATC	5 cut(s)	94, 471, 704, 778, 1024
BssNAI	GTATAC	1 cut(s)	832
Bst1107I	GTATAC	1 cut(s)	832
Bst2UI	CCWGG	3 cut(s)	424, 783, 915
Bst4CI	ACNGT	4 cut(s)	162, 271, 625, 766
Bst6I	CTCTTC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	192, 966
BstF5I	GGATG	2 cut(s)	619, 789
BstKTI	GATC	5 cut(s)	97, 474, 707, 781, 1027
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	5 cut(s)	94, 471, 704, 778, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 434, 755
BstNI	CCWGG	3 cut(s)	424, 783, 915
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	4 cut(s)	422, 781, 913, 1003
BstSFI	CTRYAG	2 cut(s)	135, 327
BstV1I	GCAGC	4 cut(s)	121, 149, 736, 943
BstV2I	GAAGAC	1 cut(s)	369
BstZ17I	GTATAC	1 cut(s)	832
BsuRI	GGCC	2 cut(s)	27, 820
BtsCI	GGATG	2 cut(s)	619, 789
BtsIMutI	CAGTG	2 cut(s)	158, 630
BveI	ACCTGC	1 cut(s)	763
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	152, 223, 403, 662
CviAII	CATG	4 cut(s)	104, 122, 742, 955
CviQI	GTAC	4 cut(s)	152, 223, 403, 662
DdeI	CTNAG	2 cut(s)	192, 966
DpnI	GATC	5 cut(s)	96, 473, 706, 780, 1026
DpnII	GATC	5 cut(s)	94, 471, 704, 778, 1024
DraI	TTTAAA	1 cut(s)	684
EaeI	YGGCCR	1 cut(s)	818
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco57I	CTGAAG	2 cut(s)	16, 590
Eco88I	CYCGRG	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	422, 781, 913
EcoT22I	ATGCAT	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	4 cut(s)	107, 125, 745, 958
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	4 cut(s)	103, 121, 741, 954
FauI	CCCGC	1 cut(s)	506
FbaI	TGATCA	1 cut(s)	471
FblI	GTMKAC	2 cut(s)	733, 831
Fnu4HI	GCNGC	4 cut(s)	135, 138, 750, 932
FokI	GGATG	2 cut(s)	626, 776
Fsp4HI	GCNGC	4 cut(s)	135, 138, 750, 932
FspBI	CTAG	4 cut(s)	92, 282, 288, 599
GluI	GCNGC	4 cut(s)	135, 138, 750, 932
GsuI	CTGGAG	2 cut(s)	693, 898
HaeIII	GGCC	2 cut(s)	27, 820
HapII	CCGG	1 cut(s)	1005
Hin1II	CATG	4 cut(s)	107, 125, 745, 958
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	2 cut(s)	169, 923
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	3 cut(s)	155, 897, 962
Hpy166II	GTNNAC	2 cut(s)	734, 832
Hpy188I	TCNGA	2 cut(s)	467, 570
Hpy188III	TCNNGA	2 cut(s)	200, 877
Hpy8I	GTNNAC	2 cut(s)	734, 832
HpyAV	CCTTC	2 cut(s)	242, 565
HpyCH4III	ACNGT	4 cut(s)	162, 271, 625, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 434, 755
HpyF3I	CTNAG	2 cut(s)	192, 966
Hsp92II	CATG	4 cut(s)	107, 125, 745, 958
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	5 cut(s)	94, 471, 704, 778, 1024
LmnI	GCTCC	2 cut(s)	580, 879
Lsp1109I	GCAGC	4 cut(s)	121, 149, 736, 943
LweI	GCATC	2 cut(s)	121, 350
MaeI	CTAG	4 cut(s)	92, 282, 288, 599
MaeIII	GTNAC	5 cut(s)	265, 271, 553, 625, 950
MalI	GATC	5 cut(s)	96, 473, 706, 780, 1026
MboI	GATC	5 cut(s)	94, 471, 704, 778, 1024
MboII	GAAGA	4 cut(s)	22, 178, 263, 374
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	4 cut(s)	276, 415, 530, 823
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	932
MnlI	CCTC	4 cut(s)	38, 188, 597, 705
Mox20I	TGGCCA	1 cut(s)	820
Mph1103I	ATGCAT	1 cut(s)	343
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	2 cut(s)	6, 683
MslI	CAYNNNNRTG	3 cut(s)	102, 126, 204
Msp20I	TGGCCA	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	1005
MspR9I	CCNGG	4 cut(s)	424, 783, 915, 1005
MvaI	CCWGG	3 cut(s)	424, 783, 915
MwoI	GCNNNNNNNGC	3 cut(s)	33, 434, 755
NciI	CCSGG	1 cut(s)	1005
NdeII	GATC	5 cut(s)	94, 471, 704, 778, 1024
NlaIII	CATG	4 cut(s)	107, 125, 745, 958
NlaIV	GGNNCC	2 cut(s)	576, 868
NmuCI	GTSAC	3 cut(s)	271, 625, 950
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	745
PaqCI	CACCTGC	1 cut(s)	763
PciI	ACATGT	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	914
PkrI	GCNGC	4 cut(s)	136, 139, 751, 933
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
PscI	ACATGT	1 cut(s)	741
Psp6I	CCWGG	3 cut(s)	422, 781, 913
PspGI	CCWGG	3 cut(s)	422, 781, 913
PspN4I	GGNNCC	2 cut(s)	576, 868
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	2 cut(s)	139, 331
PstNI	CAGNNNCTG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	153, 224, 404, 663
RsaNI	GTAC	4 cut(s)	152, 223, 403, 662
RseI	CAYNNNNRTG	3 cut(s)	102, 126, 204
SaqAI	TTAA	2 cut(s)	6, 683
SatI	GCNGC	4 cut(s)	135, 138, 750, 932
Sau3AI	GATC	5 cut(s)	94, 471, 704, 778, 1024
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	4 cut(s)	424, 783, 915, 1005
SfaNI	GCATC	2 cut(s)	121, 350
SfcI	CTRYAG	2 cut(s)	135, 327
SmiMI	CAYNNNNRTG	3 cut(s)	102, 126, 204
Sse9I	AATT	4 cut(s)	276, 415, 530, 823
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	4 cut(s)	92, 282, 288, 599
StyD4I	CCNGG	4 cut(s)	422, 781, 913, 1003
TaaI	ACNGT	4 cut(s)	162, 271, 625, 766
TaqI	TCGA	3 cut(s)	164, 344, 703
TasI	AATT	4 cut(s)	276, 415, 530, 823
TatI	WGTACW	2 cut(s)	151, 402
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	6, 683
Tru9I	TTAA	2 cut(s)	6, 683
TscAI	CASTG	2 cut(s)	165, 630
TseFI	GTSAC	3 cut(s)	271, 625, 950
TseI	GCWGC	4 cut(s)	134, 137, 749, 931
Tsp45I	GTSAC	3 cut(s)	271, 625, 950
TspDTI	ATGAA	6 cut(s)	375, 630, 669, 778, 999, 1055
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	165, 630
Van91I	CCANNNNNTGG	1 cut(s)	914
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	1 cut(s)	745
XmiI	GTMKAC	2 cut(s)	733, 831
XspI	CTAG	4 cut(s)	92, 282, 288, 599
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.