FvH4_5g11161

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003685
Physical Location & Seq
Reverse (-)
6298410 .. 6298869
460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11161.t1

Sequence Viewer

Length: 249 bp
ATGGATGGAGCTCGACGTCCAAATGAAAGAGCGGACGGCTGGTTGGAGATGGAGCTGGGTGAGTTTCTATGCCAAGCAGAAGAAGATGGAGAGTTGGAAATGATGTGTGCGGAGTATAAAAATCTGTGTTGGAAGAGTGGTCTTATTGTGCAGGGAATCGAGGTCAGGCCAGAAAGAAAGGAATACTCCGAGGCCAGAGGCAAGGCAGGATATTTCAGAGCCAAAGGCAAAAAGGCCTTGTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

83

Amino Acids

9.47

Weight (kDa)

5.24

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 5 - 57 9.5e-16 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 2 cut(s) 32, 110
AcyI GRCGYC 1 cut(s) 16
AluBI AGCT 2 cut(s) 11, 55
AluI AGCT 2 cut(s) 11, 55
Alw21I GWGCWC 1 cut(s) 13
AoxI GGCC 3 cut(s) 167, 192, 234
AsuHPI GGTGA 1 cut(s) 71
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BccI CCATC 2 cut(s) 43, 80
BceAI ACGGC 1 cut(s) 52
BfaI CTAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 3 cut(s) 169, 194, 236
BsiHKAI GWGCWC 1 cut(s) 13
BsnI GGCC 3 cut(s) 169, 194, 236
Bsp1286I GDGCHC 1 cut(s) 13
BspACI CCGC 2 cut(s) 32, 110
BspANI GGCC 3 cut(s) 169, 194, 236
BsrBI CCGCTC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 10
BsuRI GGCC 3 cut(s) 169, 194, 236
BtsCI GGATG 1 cut(s) 10
CviJI RGCY 7 cut(s) 11, 39, 55, 169, 194, 221, 236
CviKI_1 RGCY 7 cut(s) 11, 39, 55, 169, 194, 221, 236
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 13
FaiI YATR 2 cut(s) 70, 117
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 13
FspBI CTAG 1 cut(s) 247
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 3 cut(s) 169, 194, 236
Hin1I GRCGYC 1 cut(s) 16
HinfI GANTC 1 cut(s) 156
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 190, 218
Hpy99I CGWCG 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 8, 52
LpnPI CCDG 7 cut(s) 25, 41, 137, 151, 183, 192, 208
MaeI CTAG 1 cut(s) 247
MaeII ACGT 1 cut(s) 16
MbiI CCGCTC 1 cut(s) 32
MboII GAAGA 3 cut(s) 92, 95, 145
MhlI GDGCHC 1 cut(s) 13
MmeI TCCRAC 3 cut(s) 24, 75, 110
MnlI CCTC 3 cut(s) 154, 184, 191
PceI AGGCCT 1 cut(s) 236
PfeI GAWTC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 13
SetI ASST 4 cut(s) 13, 19, 57, 165
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 2 cut(s) 32, 110
SspMI CTAG 1 cut(s) 247
SstI GAGCTC 1 cut(s) 13
StuI AGGCCT 1 cut(s) 236
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 13, 159
TfiI GAWTC 1 cut(s) 156
TspDTI ATGAA 1 cut(s) 39
XspI CTAG 1 cut(s) 247
ZraI GACGTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.