Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019397.1

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 253

Gene Structure 253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

gagtttgagtgaaatggttgaaggaggagagctcaagtacactgcctttctggcgcagccggaaagagaaattagtgaagacactcgacttcaagacaaaagggcggatggctggttggagatggagctaggtgagtatttctgtgaaggtgaggaagatgtggagttggagatgatttgttgtgagattaatagtagcggcaagtgtggcatcattgtgcaagggattgaggtcagacccaaaagcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

4.21

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 199
AfaI	GTAC	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	21, 93
AluBI	AGCT	2 cut(s)	32, 128
AluI	AGCT	2 cut(s)	32, 128
Alw21I	GWGCWC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	144, 162
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	102, 116
BfaI	CTAG	2 cut(s)	129, 251
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	57, 200
BlsI	GCNGC	2 cut(s)	58, 201
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	105, 199
BstF5I	GGATG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 208
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
CfoI	GCGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	38
CviJI	RGCY	4 cut(s)	32, 59, 112, 128
CviKI_1	RGCY	4 cut(s)	32, 59, 112, 128
CviQI	GTAC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	57, 200
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	57, 200
FspBI	CTAG	2 cut(s)	129, 251
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	57, 200
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	144, 162
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	15, 141
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 208
HspAI	GCGC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	3 cut(s)	36, 73, 98
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	129, 251
MboII	GAAGA	2 cut(s)	90, 168
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	97, 148
MnlI	CCTC	3 cut(s)	18, 146, 224
MseI	TTAA	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	51, 208
PkrI	GCNGC	2 cut(s)	58, 201
PshBI	ATTAAT	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	190
SatI	GCNGC	2 cut(s)	57, 200
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	5 cut(s)	34, 130, 134, 152, 235
SfaNI	GCATC	1 cut(s)	220
SgeI	CNNG	9 cut(s)	47, 63, 72, 97, 105, 125, 141, 215, 234
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	105, 199
SspMI	CTAG	2 cut(s)	129, 251
SstI	GAGCTC	1 cut(s)	34
TaqI	TCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	190
Tru9I	TTAA	1 cut(s)	190
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	1 cut(s)	56
TspRI	CASTG	1 cut(s)	47
VspI	ATTAAT	1 cut(s)	190
XspI	CTAG	2 cut(s)	129, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.