RLG00000017459

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003685
Physical Location & Seq
Forward (+)
17067724 .. 17068074
351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017459

Sequence Viewer

Length: 351 bp
ATGCATGCATCGCATTCCCAAGAAATTGATGAAGCTCCATATCCGAGGGAAAGAGCGGATGGCTGGTTAGAGATTGAACTAGGTGAATTCTCTTATGAAAGAGACGAGGAGTTGCTGAAGATGTCTTGTAAGGAGAATAGTTGTGGTGGCTTCAAGGGTGGTCTCATTGTTCAAGGGATTGAGATCAGACCCTATTTTGGAGAAAGGCCGGATCCAAGGCAACAATGGCAGTCTTTTTGGGCCAGAATATGGAACAGGGCCCAATCTTACTCTTATTGGATCAAATATTCTTTTGGTCTGATGTTCTTATTGTTGTTTTACAAGAGCTTTTGCAATTTGCGTTCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

117

Amino Acids

13.9

Weight (kDa)

5.7

Isoelectric Point (pI)

64.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 13 - 64 1.4e-14 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 1 cut(s) 56
AclWI GGATC 3 cut(s) 206, 219, 287
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 197, 249
AgsI TTSAA 3 cut(s) 77, 154, 173
AluBI AGCT 2 cut(s) 35, 327
AluI AGCT 2 cut(s) 35, 327
Alw26I GTCTC 2 cut(s) 96, 167
AlwI GGATC 3 cut(s) 206, 219, 287
AoxI GGCC 3 cut(s) 206, 240, 258
ApaI GGGCCC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 240, 258, 259
AsuHPI GGTGA 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 262
BamHI GGATCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 262
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 96, 167
BfaI CTAG 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 240, 258, 259
BmiI GGNNCC 2 cut(s) 213, 260
BmsI GCATC 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 44, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 249
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 44, 215
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 197, 249
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 262
BshFI GGCC 3 cut(s) 208, 242, 260
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 197, 249
BsmAI GTCTC 2 cut(s) 96, 167
BsmBI CGTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 208, 242, 260
Bso31I GGTCTC 1 cut(s) 167
Bsp120I GGGCCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 183, 211, 279
BspACI CCGC 1 cut(s) 56
BspANI GGCC 3 cut(s) 208, 242, 260
BspLI GGNNCC 2 cut(s) 213, 260
BspPI GGATC 3 cut(s) 206, 219, 287
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 44, 215
BssMI GATC 3 cut(s) 183, 211, 279
BssT1I CCWWGG 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 3 cut(s) 186, 214, 282
BstMAI GTCTC 2 cut(s) 96, 167
BstMBI GATC 3 cut(s) 183, 211, 279
BstMWI GCNNNNNNNGC 2 cut(s) 10, 226
BstNSI RCATGY 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 208, 242, 260
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 240, 258, 259
CviAII CATG 1 cut(s) 5
CviJI RGCY 7 cut(s) 35, 63, 150, 208, 242, 260, 327
CviKI_1 RGCY 7 cut(s) 35, 63, 150, 208, 242, 260, 327
DpnI GATC 3 cut(s) 185, 213, 281
DpnII GATC 3 cut(s) 183, 211, 279
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 2 cut(s) 6, 10
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 40, 96, 250
FatI CATG 1 cut(s) 4
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 262
FspBI CTAG 1 cut(s) 80
HaeIII GGCC 3 cut(s) 208, 242, 260
HapII CCGG 1 cut(s) 209
Hin1II CATG 1 cut(s) 8
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 45, 188, 300
HpyCH4V TGCA 3 cut(s) 4, 8, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 226
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 3 cut(s) 183, 211, 279
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 49, 222, 241, 256
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 80
MalI GATC 3 cut(s) 185, 213, 281
MbiI CCGCTC 1 cut(s) 56
MboI GATC 3 cut(s) 183, 211, 279
MboII GAAGA 1 cut(s) 130
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 3 cut(s) 24, 86, 334
MnlI CCTC 2 cut(s) 39, 100
Mph1103I ATGCAT 2 cut(s) 6, 10
MspI CCGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 10, 226
NdeII GATC 3 cut(s) 183, 211, 279
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 2 cut(s) 213, 260
NsiI ATGCAT 2 cut(s) 6, 10
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 213, 260
PspOMI GGGCCC 1 cut(s) 258
PspPI GGNCC 3 cut(s) 240, 258, 259
PsuI RGATCY 1 cut(s) 211
Sau3AI GATC 3 cut(s) 183, 211, 279
Sau96I GGNCC 3 cut(s) 240, 258, 259
SduI GDGCHC 1 cut(s) 262
SetI ASST 3 cut(s) 37, 85, 329
SfaNI GCATC 1 cut(s) 17
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 24, 86, 334
SsiI CCGC 1 cut(s) 56
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 215
TasI AATT 3 cut(s) 24, 86, 334
TspDTI ATGAA 2 cut(s) 45, 111
Van91I CCANNNNNTGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 2 cut(s) 6, 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.