Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

6329191 .. 6331498

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTTGGAGGGTAAAGAGCTGGTGGATATGGTGTTGAAGCTTAGCATGTGGAACATCCGCATCTGGGGCAACTGCTATAATTGTTTAGGGCCTGATTGGGCAGAACAACTAAGTGAGTTGGATAGATCTCTTAGAGTACTGATAGCCCAACTAGAAATGGAGGCAAAGAAAAACATCACCGATCTCGTAAGGTTTGTGCCACTTCATCTGTTGCCAATTGGTTTGGCAAGCAATAGGGAGAATTGCTTACAGCCACTGACAGAAGAGATAGCTAAATACAACAGGATATTGCATCTTCCAAAGGAAGAAGTGAAAAATCTTATTAAACAATTAAAGAATGGTGCGGAACTCGTTCGCAAATGCTCCAAGATTCGCAAGCGGGCCAATTACAAAAAGAACGAGCACATCACCAAAATTCTGAGTTTGAACAACTCTCTTCAAAGGCTCATCATTCGACTCAAAGTGCAAGTGGAAAAGAGTGTGAAGGAGACTTCGGATTCAGCAGACAAAATAGAGGCGGTGATCAAGAACATTGAAGCTGGAGGTGTAGAACAAATTGATGATCTTGGAGGTAAAGGTCACAGTCCAGTAGAACCTGGATCACCTGCTGTTATACGGGACGTACCACAAGTCAACATGGAGGTTTCAAGGGATGTGATTAAGGAGGCATTGGTGGATTCAGCAAAGATTCTTATAGATCAGAAGGGGGTGAAGTCCAATGAACGGAGTGATGTGGTACAAGATCAAATGGAAACTGCAGCTGGATTAGATGTACTGAGTTTGCAGGGATCGACGGATGTGGAGACATTGTGTTCAACTCTTGTTGATTCAGCATTAAAGTGTGCAACAAATATAGACAAGATGGCAGTCGACAAAAATGAAGGAAGTGGTAGTCCAATTGAAATTGCAGTAGCTGCTGAAACTGAACCTCCTTCCCCTACAGTTCGGGATGTGCCGAGGAATGTTAAAAAGGTAACAGCTGAACCTCATTGTTCATCGCCAGCAGTTGGGATGAGATTGGGTTCGACAAACAGGACAAAGGTCAAACAACCCGATAAGGAAGAGGAAGCAGTGTTAGAGCATCTCAAATCGAGAGCGAATGCTAGGATGACACTTCTGAAGAAAGTAAGTCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

380

Amino Acids

41.95

Weight (kDa)

8.33

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	83 - 163	5.6e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	1007
AccI	GTMKAC	1 cut(s)	870
AciI	CCGC	4 cut(s)	58, 344, 379, 518
AclWI	GGATC	2 cut(s)	607, 796
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	1139
AfaI	GTAC	4 cut(s)	138, 624, 738, 774
AfiI	CCNNNNNNNGG	3 cut(s)	64, 723, 1007
AgsI	TTSAA	7 cut(s)	37, 427, 440, 536, 648, 816, 902
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	19, 40, 272, 539, 761, 914, 980
AluI	AGCT	7 cut(s)	19, 40, 272, 539, 761, 914, 980
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	482, 797
AlwI	GGATC	2 cut(s)	607, 796
AlwNI	CAGNNNCTG	2 cut(s)	256, 914
AoxI	GGCC	2 cut(s)	89, 381
ApeKI	GCWGC	2 cut(s)	758, 914
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	89, 381
AsuHPI	GGTGA	5 cut(s)	169, 400, 532, 594, 721
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	770, 901
BccI	CCATC	1 cut(s)	856
BciT130I	CCWGG	1 cut(s)	597
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	482, 797
BfaI	CTAG	2 cut(s)	152, 1104
BfmI	CTRYAG	2 cut(s)	756, 939
BfuAI	ACCTGC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	2 cut(s)	759, 915
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	2 cut(s)	760, 916
BmcAI	AGTACT	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	89, 381
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	3 cut(s)	69, 301, 1090
BoxI	GACNNNNGTC	1 cut(s)	1040
BpmI	CTGGAG	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	956
BsaXI	ACNNNNNCTCC	4 cut(s)	794, 824, 913, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 723, 1007
Bse1I	ACTGG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	956
BseGI	GGATG	6 cut(s)	54, 658, 802, 955, 1017, 1113
BseLI	CCNNNNNNNGG	3 cut(s)	64, 723, 1007
BseMII	CTCAG	2 cut(s)	410, 767
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	770, 901
BshFI	GGCC	2 cut(s)	91, 383
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	3 cut(s)	64, 723, 1007
BsmAI	GTCTC	2 cut(s)	482, 797
BsmFI	GGGAC	1 cut(s)	632
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	2 cut(s)	91, 383
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
Bsp1720I	GCTNAGC	1 cut(s)	41
BspACI	CCGC	4 cut(s)	58, 344, 379, 518
BspANI	GGCC	2 cut(s)	91, 383
BspCNI	CTCAG	2 cut(s)	411, 768
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	2 cut(s)	607, 796
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	956
BssMI	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	584, 943
Bst6I	CTCTTC	3 cut(s)	258, 441, 1056
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	4 cut(s)	229, 377, 381, 1002
BstDEI	CTNAG	5 cut(s)	41, 110, 131, 419, 776
BstF5I	GGATG	6 cut(s)	54, 658, 802, 955, 1017, 1113
BstKTI	GATC	8 cut(s)	128, 184, 525, 565, 602, 700, 745, 791
BstMAI	GTCTC	2 cut(s)	482, 797
BstMBI	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 914
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	1 cut(s)	49
BstPAI	GACNNNNGTC	1 cut(s)	1040
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	756, 939
BstV1I	GCAGC	2 cut(s)	770, 901
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	91, 383
BtgZI	GCGATG	1 cut(s)	981
BtsCI	GGATG	6 cut(s)	54, 658, 802, 955, 1017, 1113
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	2 cut(s)	254, 1077
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	4 cut(s)	229, 377, 381, 1002
CaiI	CAGNNNCTG	2 cut(s)	256, 914
Cfr13I	GGNCC	2 cut(s)	89, 381
Csp6I	GTAC	4 cut(s)	137, 623, 737, 773
CviAII	CATG	2 cut(s)	46, 637
CviQI	GTAC	4 cut(s)	137, 623, 737, 773
DdeI	CTNAG	5 cut(s)	41, 110, 131, 419, 776
DpnI	GATC	8 cut(s)	127, 183, 524, 564, 601, 699, 744, 790
DpnII	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
Eam1104I	CTCTTC	3 cut(s)	258, 441, 1056
EarI	CTCTTC	3 cut(s)	258, 441, 1056
Eco57I	CTGAAG	1 cut(s)	1139
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	595
FaeI	CATG	2 cut(s)	49, 640
FaiI	YATR	7 cut(s)	29, 47, 78, 614, 638, 695, 854
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	2 cut(s)	45, 636
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	2 cut(s)	759, 915
FokI	GGATG	6 cut(s)	41, 665, 809, 962, 1024, 1120
Fsp4HI	GCNGC	2 cut(s)	759, 915
FspBI	CTAG	2 cut(s)	152, 1104
GluI	GCNGC	2 cut(s)	759, 915
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	91, 383
Hin1II	CATG	2 cut(s)	49, 640
HincII	GTYRAC	2 cut(s)	634, 871
HindII	GTYRAC	2 cut(s)	634, 871
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	6 cut(s)	370, 456, 497, 677, 688, 827
HphI	GGTGA	5 cut(s)	169, 400, 532, 594, 721
Hpy166II	GTNNAC	2 cut(s)	634, 871
Hpy188I	TCNGA	4 cut(s)	420, 496, 702, 1119
Hpy188III	TCNNGA	3 cut(s)	526, 947, 1092
Hpy8I	GTNNAC	2 cut(s)	634, 871
Hpy99I	CGWCG	1 cut(s)	796
HpyAV	CCTTC	4 cut(s)	478, 697, 875, 942
HpyCH4III	ACNGT	2 cut(s)	584, 943
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	292, 466, 758, 784, 845, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 914
HpyF3I	CTNAG	5 cut(s)	41, 110, 131, 419, 776
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	2 cut(s)	49, 640
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	2 cut(s)	770, 901
LweI	GCATC	3 cut(s)	69, 301, 1090
MaeI	CTAG	2 cut(s)	152, 1104
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	578, 973
MalI	GATC	8 cut(s)	127, 183, 524, 564, 601, 699, 744, 790
MboI	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
MboII	GAAGA	6 cut(s)	275, 287, 317, 428, 1073, 1132
MfeI	CAATTG	2 cut(s)	216, 897
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	9 cut(s)	79, 216, 241, 329, 385, 414, 555, 897, 903
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	5 cut(s)	324, 332, 660, 836, 966
MslI	CAYNNNNRTG	1 cut(s)	838
MspA1I	CMGCKG	2 cut(s)	761, 980
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	2 cut(s)	216, 897
Mva1269I	GAATGC	1 cut(s)	1105
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	66, 914
NdeII	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
NlaIII	CATG	2 cut(s)	49, 640
NmeAIII	GCCGAG	1 cut(s)	981
NmuCI	GTSAC	1 cut(s)	578
NspI	RCATGY	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	613
PctI	GAATGC	1 cut(s)	1105
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	5 cut(s)	370, 497, 677, 688, 827
PflMI	CCANNNNNTGG	1 cut(s)	1007
PkrI	GCNGC	2 cut(s)	760, 916
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PshAI	GACNNNNGTC	1 cut(s)	1040
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	89, 381
PstI	CTGCAG	1 cut(s)	760
PstNI	CAGNNNCTG	2 cut(s)	256, 914
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	2 cut(s)	761, 980
RsaI	GTAC	4 cut(s)	138, 624, 738, 774
RsaNI	GTAC	4 cut(s)	137, 623, 737, 773
RseI	CAYNNNNRTG	1 cut(s)	838
SalI	GTCGAC	1 cut(s)	869
SaqAI	TTAA	5 cut(s)	324, 332, 660, 836, 966
SatI	GCNGC	2 cut(s)	759, 915
Sau3AI	GATC	8 cut(s)	125, 181, 522, 562, 599, 697, 742, 788
Sau96I	GGNCC	2 cut(s)	89, 381
ScaI	AGTACT	1 cut(s)	138
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	3 cut(s)	69, 301, 1090
SfcI	CTRYAG	2 cut(s)	756, 939
SmiMI	CAYNNNNRTG	1 cut(s)	838
Sse9I	AATT	9 cut(s)	79, 216, 241, 329, 385, 414, 555, 897, 903
SsiI	CCGC	4 cut(s)	58, 344, 379, 518
SspMI	CTAG	2 cut(s)	152, 1104
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	584, 943
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	5 cut(s)	454, 791, 870, 1025, 1091
TasI	AATT	9 cut(s)	79, 216, 241, 329, 385, 414, 555, 897, 903
TatI	WGTACW	2 cut(s)	136, 772
TfiI	GAWTC	5 cut(s)	370, 497, 677, 688, 827
Tru1I	TTAA	5 cut(s)	324, 332, 660, 836, 966
Tru9I	TTAA	5 cut(s)	324, 332, 660, 836, 966
TscAI	CASTG	2 cut(s)	261, 1077
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	758, 914
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	4 cut(s)	194, 735, 894, 984
TspGWI	ACGGA	2 cut(s)	739, 809
TspRI	CASTG	2 cut(s)	261, 1077
Van91I	CCANNNNNTGG	1 cut(s)	1007
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	870
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	152, 1104
ZrmI	AGTACT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.