Rroxscaffold_3G00267920

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003685
Physical Location & Seq
Reverse (-)
61067851 .. 61068480
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00267920.1

Sequence Viewer

Length: 630 bp
ATGGAGTGGGAAAAAAATGTTATATATATGATATGTGCAAGGGAGCTTTCTATTGTTTGGGCAGAAGATAAATGTAGATACTGGACATGGATTTCTCTGGCTGAGTCCAGGTTTGAGAAGGTGGCTTCTCTAGACAGAGTTTGTTGGCTCGAAATACGTGGGAAAATCGATATGATTATTCTGTCTCCATGGACTCCCTACAAAGCTCAACTTGTGTACAAGCTAACCGAAGAAGCATATGGATTCGACGTGCCTGTGGAGGTCGCAATTGGTGCAAGGCATTATGGATTTGAATACGGACCTCTGGATGCCGCACTTGGTGGAGATGAAAAGAAGCAGACAGTTTATCTGGATCCAAATAATAAGCAAATTACCAATGGAGCTCGGCGTCCAAAGGAAAGAGTGGACGGCTGGTTGGAGATGGAGCTGGGGGAGTTTCTATGCCAAGCAGAAGAAGAAGGGGAGTTGGAAATGATCTGTGCGGAGGTTAAAGATCTGTGTTGGAAGAGAGGTCTTATTGTGCAAGGAATTGAGGTCAGGCCAGAAAGAAAGGAATATTGCGAGGCCAAAGGCAAGACAAGAAGATCATTTTTTCCGGGCCAGAGGCAAGAAAGCAACGCCATGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

209

Amino Acids

24.36

Weight (kDa)

5.15

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 8 - 181 1.9e-47 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 312, 482
AclWI GGATC 2 cut(s) 347, 360
AcyI GRCGYC 1 cut(s) 388
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 1 cut(s) 293
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 5 cut(s) 46, 206, 223, 383, 427
AluI AGCT 5 cut(s) 46, 206, 223, 383, 427
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 2 cut(s) 347, 360
AoxI GGCC 3 cut(s) 539, 564, 598
AspS9I GGNCC 2 cut(s) 299, 598
AsuC2I CCSGG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 299
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 385
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 109, 597
Bme18I GGWCC 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 299, 598
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 2 cut(s) 109, 597
BmsI GCATC 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 597
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 427
BshFI GGCC 3 cut(s) 541, 566, 600
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 3 cut(s) 541, 566, 600
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 5 cut(s) 352, 474, 493, 584, 624
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 2 cut(s) 312, 482
BspANI GGCC 3 cut(s) 541, 566, 600
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 2 cut(s) 347, 360
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 5 cut(s) 352, 474, 493, 584, 624
BssNI GRCGYC 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 500
BstACI GRCGYC 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 5 cut(s) 355, 477, 496, 587, 627
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 5 cut(s) 352, 474, 493, 584, 624
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 107, 595
BstX2I RGATCY 2 cut(s) 352, 493
BstYI RGATCY 2 cut(s) 352, 493
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 3 cut(s) 541, 566, 600
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 299, 598
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 87, 189, 622
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 102
DpnI GATC 5 cut(s) 354, 476, 495, 586, 626
DpnII GATC 5 cut(s) 352, 474, 493, 584, 624
DraIII CACNNNGTG 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 90, 192, 625
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FatI CATG 3 cut(s) 86, 188, 621
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 312
GsaI CCCAGC 1 cut(s) 431
HaeIII GGCC 3 cut(s) 541, 566, 600
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 3 cut(s) 90, 192, 625
HinfI GANTC 3 cut(s) 104, 193, 243
HpaII CCGG 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 217, 406
Hpy188I TCNGA 1 cut(s) 629
Hpy188III TCNNGA 3 cut(s) 131, 305, 350
Hpy8I GTNNAC 2 cut(s) 217, 406
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 112, 452
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 157, 249
HpyCH4V TGCA 3 cut(s) 38, 275, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 157, 249
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 3 cut(s) 90, 192, 625
Kzo9I GATC 5 cut(s) 352, 474, 493, 584, 624
LmnI GCTCC 3 cut(s) 43, 380, 424
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 157, 249
MalI GATC 5 cut(s) 354, 476, 495, 586, 626
MboI GATC 5 cut(s) 352, 474, 493, 584, 624
MboII GAAGA 6 cut(s) 77, 242, 464, 467, 517, 594
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 2 cut(s) 352, 493
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 3 cut(s) 267, 369, 528
MlyI GAGTC 2 cut(s) 113, 187
MmeI TCCRAC 3 cut(s) 396, 447, 482
MnlI CCTC 7 cut(s) 253, 312, 478, 503, 526, 556, 597
MseI TTAA 1 cut(s) 489
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 2 cut(s) 109, 597
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 597
NcoI CCATGG 1 cut(s) 188
NdeI CATATG 1 cut(s) 238
NdeII GATC 5 cut(s) 352, 474, 493, 584, 624
NlaIII CATG 3 cut(s) 90, 192, 625
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 364
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 2 cut(s) 112, 187
PpsI GAGTC 2 cut(s) 112, 187
Ppu21I YACGTR 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 299, 598
PsuI RGATCY 2 cut(s) 352, 493
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 5 cut(s) 352, 474, 493, 584, 624
Sau96I GGNCC 2 cut(s) 299, 598
SchI GAGTC 2 cut(s) 113, 187
ScrFI CCNGG 2 cut(s) 109, 597
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 299
Sse9I AATT 3 cut(s) 267, 369, 528
SsiI CCGC 2 cut(s) 312, 482
SspI AATATT 1 cut(s) 557
SspMI CTAG 1 cut(s) 131
SstI GAGCTC 1 cut(s) 385
StyD4I CCNGG 2 cut(s) 107, 595
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 160, 252
TaqI TCGA 3 cut(s) 150, 168, 246
TasI AATT 3 cut(s) 267, 369, 528
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 130
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.