Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

8957 .. 9868

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcaagtggagtttccctaccaatgcatagaaaacattatctccctgaccactcctgcagacgcatgcagactgtcctcgatttcttggagattccggggcgctgcagaatccgacggaacttgggaaaatttccttcctcctgatatccacaggatcctatcccagtccacgtcttcatctgctacatcagttgaccctggcatctccaaatccaagaagcagttttacctcgatctctgtgacaacccagttctcatcgacaatggcaagatgagcttttcgctggacaaatggagtgggaagaaatgttatatgatttgtgcaagggcacttcatgttgtttggtcaggagaaaaacatacatactggaaatggatttctgtgcccgattccaggtttgaggaggtggcttgtctgaacagtgtttgttggcttgaaatccgtggaaaaattgatatgcagatgatgtctccatccactctttataaggcttatattgtgtataagctaactgcagacgcatatggatttcgagtacctgtagaggtcgcaactcgttcaagggattatggatttgaatataaagatcttgatcgtgacgggtttatagaatacccggataagcggagagggtgtctgaatcctgatatacaaatcgatggaactctatctccaaaggaaagagtggacggctggttggaaatggagctgggtgagtttttatgccaaggaaaagaagttggggagttggaaatgatatgtgtggaaatgaacgatctgtgttggaagagtggtcttattgtgcaaggaattgaggtcaggccagaaagaaaggaatattgtgaggccaaaggcaaggcaagatcacatttgcgagacaaaggcaagaaagcaatgaccacgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

303

Amino Acids

34.69

Weight (kDa)

5.94

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	2 cut(s)	151, 164
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	440, 564, 581
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	199, 395
AloI	GAACNNNNNNTCC	2 cut(s)	658, 690
AluBI	AGCT	3 cut(s)	279, 511, 712
AluI	AGCT	3 cut(s)	279, 511, 712
Alw26I	GTCTC	2 cut(s)	477, 873
AlwI	GGATC	2 cut(s)	151, 164
AoxI	GGCC	2 cut(s)	824, 849
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	2 cut(s)	98, 620
AsuHPI	GGTGA	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	334, 390
BamHI	GGATCC	1 cut(s)	156
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	2 cut(s)	484, 656
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	2 cut(s)	201, 397
BcnI	CCSGG	2 cut(s)	98, 620
BcoDI	GTCTC	2 cut(s)	477, 873
BfmI	CTRYAG	4 cut(s)	57, 105, 516, 543
BfoI	RGCGCY	1 cut(s)	105
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	4 cut(s)	98, 201, 397, 620
BmgBI	CACGTC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	4 cut(s)	98, 201, 397, 620
BmrI	ACTGGG	2 cut(s)	160, 245
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	2 cut(s)	160, 245
BpiI	GAAGAC	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	98, 620
Bsa29I	ATCGAT	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	97, 199, 445, 730
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 622, 652, 658, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	166, 251, 374
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	201, 397
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	4 cut(s)	97, 199, 445, 730
BseGI	GGATG	1 cut(s)	476
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	903
BseNI	ACTGG	3 cut(s)	166, 251, 374
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	2 cut(s)	334, 390
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	712
BshFI	GGCC	2 cut(s)	826, 851
BshVI	ATCGAT	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	97, 620
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	2 cut(s)	477, 873
BsnI	GGCC	2 cut(s)	826, 851
Bsp1286I	GDGCHC	2 cut(s)	334, 390
Bsp143I	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	2 cut(s)	826, 851
BspDI	ATCGAT	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	3 cut(s)	61, 109, 520
BspPI	GGATC	2 cut(s)	151, 164
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	3 cut(s)	166, 251, 374
BssECI	CCNNGG	4 cut(s)	97, 199, 445, 730
BssMI	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	2 cut(s)	201, 397
Bst4CI	ACNGT	2 cut(s)	75, 425
Bst6I	CTCTTC	1 cut(s)	785
BstC8I	GCNNGC	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	476
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	7 cut(s)	159, 238, 592, 598, 781, 869, 909
BstMAI	GTCTC	2 cut(s)	477, 873
BstMBI	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	2 cut(s)	201, 397
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	4 cut(s)	96, 199, 395, 618
BstSFI	CTRYAG	4 cut(s)	57, 105, 516, 543
BstSLI	GKGCMC	2 cut(s)	334, 390
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	156, 589
BstYI	RGATCY	2 cut(s)	156, 589
Bsu15I	ATCGAT	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	826, 851
BsuTUI	ATCGAT	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	445
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	660
CseI	GACGC	2 cut(s)	71, 530
Csp6I	GTAC	1 cut(s)	539
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	2 cut(s)	66, 338
CviJI	RGCY	9 cut(s)	279, 413, 436, 494, 511, 696, 712, 826, 851
CviKI_1	RGCY	9 cut(s)	279, 413, 436, 494, 511, 696, 712, 826, 851
CviQI	GTAC	1 cut(s)	539
DpnI	GATC	7 cut(s)	158, 237, 591, 597, 780, 868, 908
DpnII	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	199, 395
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	2 cut(s)	69, 341
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	2 cut(s)	65, 337
FauNDI	CATATG	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	716
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	826, 851
HapII	CCGG	2 cut(s)	97, 620
HgaI	GACGC	2 cut(s)	71, 530
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	69, 341
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	93, 110, 392, 643
HpaII	CCGG	2 cut(s)	97, 620
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	3 cut(s)	171, 196, 691
Hpy188I	TCNGA	4 cut(s)	115, 420, 642, 911
Hpy188III	TCNNGA	5 cut(s)	143, 351, 593, 599, 647
Hpy8I	GTNNAC	3 cut(s)	171, 196, 691
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	75, 425
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	9 cut(s)	4, 27, 59, 69, 107, 326, 463, 518, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	69, 341
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	242, 599
MalI	GATC	7 cut(s)	158, 237, 591, 597, 780, 868, 908
MboI	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
MboII	GAAGA	3 cut(s)	168, 316, 802
MflI	RGATCY	2 cut(s)	156, 589
MhlI	GDGCHC	2 cut(s)	334, 390
MluCI	AATT	3 cut(s)	130, 453, 813
MmeI	TCCRAC	4 cut(s)	138, 681, 732, 767
MnlI	CCTC	9 cut(s)	88, 150, 242, 397, 400, 541, 626, 811, 841
Mph1103I	ATGCAT	1 cut(s)	29
MspI	CCGG	2 cut(s)	97, 620
MspR9I	CCNGG	4 cut(s)	98, 201, 397, 620
MvaI	CCWGG	2 cut(s)	201, 397
MwoI	GCNNNNNNNGC	1 cut(s)	276
NciI	CCSGG	2 cut(s)	98, 620
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
NlaIII	CATG	2 cut(s)	69, 341
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	2 cut(s)	242, 599
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	69
PfeI	GAWTC	4 cut(s)	93, 110, 392, 643
PkrI	GCNGC	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	199, 395
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	2 cut(s)	199, 395
PspN4I	GGNNCC	1 cut(s)	158
PstI	CTGCAG	3 cut(s)	61, 109, 520
PsuI	RGATCY	2 cut(s)	156, 589
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	7 cut(s)	156, 235, 589, 595, 778, 866, 906
ScrFI	CCNGG	4 cut(s)	98, 201, 397, 620
SduI	GDGCHC	2 cut(s)	334, 390
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	4 cut(s)	57, 105, 516, 543
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	3 cut(s)	130, 453, 813
SsiI	CCGC	1 cut(s)	628
SspI	AATATT	1 cut(s)	842
StyD4I	CCNGG	4 cut(s)	96, 199, 395, 618
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	2 cut(s)	75, 425
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	5 cut(s)	80, 234, 261, 535, 660
TasI	AATT	3 cut(s)	130, 453, 813
TfiI	GAWTC	4 cut(s)	93, 110, 392, 643
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	242, 599
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	2 cut(s)	242, 599
TspDTI	ATGAA	3 cut(s)	168, 326, 788
TspGWI	ACGGA	2 cut(s)	132, 434
TspRI	CASTG	1 cut(s)	430
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.