Rh2BG191100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003685
Physical Location & Seq
Forward (+)
17184608 .. 17185510
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG191100.1

Sequence Viewer

Length: 414 bp
ATGCTAACATCTTCCTCTTCCGGCTCTTGGATCAAATCCAAGAAGGAGCTTTACCTTCATCTCTGCGACAATCCAATTAGCACGGGAAAGATAAGCTTTTCACTGGACAAGTGGAGCGGAAAAAAATGCTATATGATATCTGCAAGGGCCCTCCAGATACTTGGGTCTGGCAGTCCTCAATTTTGGAGATGGATTTCTCTGCCCGACTCCAGATTTGAGGAGGTAGCTGAGCTTCTCGATTTTTTGTGGCTTGAAATCACTGGGAAAATTGCTACATGGATTCTGTCGCCATCATCCCTATATAAAGCTTATCTTGTCTTCAAGTTAACTGAGCGAGCTTATGGATTTAGAAGCCAACCTGTGAAGGTCAAAGTTAAAAAGTCTTGTAAGGTAATTCTAAGTGAATCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

137

Amino Acids

15.64

Weight (kDa)

9.59

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 41 - 127 2.9e-31 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 254, 322
AluBI AGCT 6 cut(s) 49, 96, 227, 232, 308, 338
AluI AGCT 6 cut(s) 49, 96, 227, 232, 308, 338
AlwI GGATC 1 cut(s) 38
AoxI GGCC 1 cut(s) 147
ApaI GGGCCC 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AspS9I GGNCC 2 cut(s) 147, 148
BaeGI GKGCMC 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 149, 182
BanII GRGCYC 1 cut(s) 151
BarI GAAGNNNNNNTAC 4 cut(s) 35, 67, 216, 248
BbsI GAAGAC 1 cut(s) 310
BccI CCATC 2 cut(s) 183, 298
BlpI GCTNAGC 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 147, 148
BmiI GGNNCC 1 cut(s) 149
BmrI ACTGGG 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 310
BpmI CTGGAG 2 cut(s) 137, 193
Bpu1102I GCTNAGC 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 108, 265
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 219, 321
BseNI ACTGG 2 cut(s) 108, 265
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 151
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 27
BsnI GGCC 1 cut(s) 149
Bsp120I GGGCCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 30
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 2 cut(s) 220, 322
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 117
BsrI ACTGG 2 cut(s) 108, 265
BssMI GATC 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 228, 330, 398
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 101, 258
Cac8I GCNNGC 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 147, 148
CviAII CATG 1 cut(s) 276
DdeI CTNAG 3 cut(s) 228, 330, 398
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 151
Eco32I GATATC 1 cut(s) 138
EcoO109I RGGNCCY 2 cut(s) 147, 148
EcoRV GATATC 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 1 cut(s) 279
FaiI YATR 6 cut(s) 132, 134, 277, 301, 303, 342
FalI AAGNNNNNCTT 5 cut(s) 80, 112, 297, 329, 391
FatI CATG 1 cut(s) 275
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 151
GsuI CTGGAG 2 cut(s) 137, 193
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 279
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 2 cut(s) 94, 306
HinfI GANTC 3 cut(s) 206, 280, 404
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 327
Hpy188III TCNNGA 3 cut(s) 154, 210, 236
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 3 cut(s) 37, 65, 358
HpyCH4V TGCA 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 228, 330, 398
Hsp92II CATG 1 cut(s) 279
KspAI GTTAAC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 46, 114
LpnPI CCDG 7 cut(s) 34, 89, 153, 167, 223, 246, 372
MalI GATC 1 cut(s) 32
MbiI CCGCTC 1 cut(s) 117
MboI GATC 1 cut(s) 30
MboII GAAGA 3 cut(s) 3, 9, 310
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 4 cut(s) 75, 179, 267, 393
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 25, 161, 186, 211, 214
MseI TTAA 2 cut(s) 326, 375
MspI CCGG 1 cut(s) 21
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 279
NlaIV GGNNCC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 280, 404
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 149
PspOMI GGGCCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 147, 148
SaqAI TTAA 2 cut(s) 326, 375
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 147, 148
SchI GAGTC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 151
Sse9I AATT 4 cut(s) 75, 179, 267, 393
SsiI CCGC 1 cut(s) 117
TaqI TCGA 1 cut(s) 237
TasI AATT 4 cut(s) 75, 179, 267, 393
TfiI GAWTC 2 cut(s) 280, 404
Tru1I TTAA 2 cut(s) 326, 375
Tru9I TTAA 2 cut(s) 326, 375
TscAI CASTG 2 cut(s) 108, 265
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 2 cut(s) 108, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.