Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Forward (+)

6668137 .. 6680062

Gene Structure 11926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG083600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGCCGCCTGATGGGGCGAATTCTACTGCTTTAAACTTTGTTGGAGGAATACCTTTTCAGTTGCTGTATGATGCAGTTAAAATAGCCATTAGGAAGACTAGCAAGTTTAAAATTCACCTCATCAATCTCCAAACGATGCTAGACGATTTACAGTCAGCACAATGGGTTATCCAACGGATAGGAGATTATAATCTTCAACTGCGTCTCCCAAACGATGTAATCGAAAATCTTCAAAGAAAAATGAATGATGGTAGAGAGCTCGTGAACACGGTATCAAAACTTAGCAGGTGGGATATCCGCATCTGGGGCAATTGCTACAACTGCATAGGAGATGACTATGGCGAACAGCTTAATGAATTGAACAGTAATATTAGAAGACTGTTTCAACTACTAGAGCTTCAGCAACAGAGGAATGTGGCCGAGCTCTTAGAGTTGGGAAGATCCGCCAATGACAAATTAGATGAAATCAAAGACAAACTAGATAGAATGGAATCACGGGATAGAAGGAAATCAGAAATGATTGCTGAGTTGATGGAGAAGCTGCCGCAGCATAATGGAACGAATGGTGTGCAACAAGTTGCATTGTCAAATGGAGGAGAAGGGGCAGCTCCTGCTCTAAGAGAAGTATTCCAGCAGCTTTTCACTGAAGTTATAAGATTGGAGGTCAAGAATCTGATGTTTAAAAGCCTCTTCCAAAGATTAGAATCCACGCTATACTGCTTACAACCATTGGTAGAAGAGATATCAAAATCTACGAGGGTATTGTATATTCAAAGGCAAGAAGTAGAAAATTTTATTAGTTGTATAGTGAAGGGTGTAGAGCTCCTTTGCGAATGCTCTAAGGTTTGCAAGAGGGTCACCCATAGAAAGAACGATTACACTGACAAAATTCAAAATTTGGATGAATCTCTTCAGACGCTCTTCATTGAACTGATACAGCAGGTGGGAAGGAGTTTGAAAGAGGCCATGGATTCGGCAGATAGTATAGAGGCGGCGATCAAAGAAATTGAAGGGATTAGTGGTGTGGTACAAAAGAATGATGTTGTGAGCAATGTGAAGGAGGGGACATTGGTGGATTCGGAAAGGGTTATAGAGGAGGCATTGAAGCCTATTGAAGGGAGTGATGCGGTACAAGATCAAATGAAAACTGATCAATTGCCGCATGAACATCCTTCACCTGCAGTTGGATTGGATGTACACACCTTGAAGAAAACAAGTGATGATGTGAATGAGGAGACATTGTTGGATTTGGCAAGGGTTAAAGACGAGGTCATCAAGCCTATTGATGACGGGAGTGATGTGTTGAAAAATGAAACTGAATGTGAAATTGCAGCAGCTGAACCACCATCTTCATCGCCAGCAGTTGGATCGGCATTCGAATCCACAAGCAATGCAACGGGAGGGCTCAAACGACTTAAGGAAAAGAAACACGATGAAACAGAAATCATCATGCAAGTGGAGTTTCCCTACCAATGCATAGAAAACATTATCTCCCTGACCACTCCTGCAGACGCATGCAGACTGTCCTCGATTTCTTGGAGATTCCGGGGCGCTGCAGAATCCGACGGAACTTGGGAAAATTTCCTTCCTCCTGATATCCACAGGATCCTATCCCAGTCCACGTCTTCATCTGCTACATCAGTTGACCCTGGCATCTCCAAATCCAAGAAGGAGTTTTACCTCGATCTCTGTGACAACCCAGTTCTCATCGACAATGGCAAGATGAGCTTTTCGCTGGACAAATGGAGTGGGAAGAAATGTTATATGATTTGTGCAAGGGCACTTCATGTTGTTTGGTCAGGAGAAAAACATACATACTGGAAATGGATTTCTGTGCCCGATTCCAGGTTTGAGGAGGTGGCTTGTCTGAACAGTGTTTGTTGGCTTGAAATCCGTGGAAAAATTGATATGCAGATGATGTCTCCATCCACTCTTTATAAGGCTTATATTGTGTATAAGCTAACTGCAGACGCATATGGATTTCGAGTACCTGTAGAGGTCGCAACTCGTTCAAGGGATTATGGATTTGAATATAAAGATCTTGATCGTGACGGGTTTATAGAATACCCGGATAAGCGGAGAGGGTGTCTGAATCCTGATATACAAATCGATGGAACTCTATCTCCAAAGGAAAGAGTGGACGGCTGGTTGGAAATGGAGCTGGGTGAGTTTTTATGCCAAGGAAAAGAAGTTGGGGAGTTGGAAATGATATGTGTGGAAATGAACGATCTGTGTTGGAAGAGTGGTCTTATTGTGCAAGGAATTGAGGTCAGGCCAGAAAGAAAGGAATATTGTGAGGCCAAAGGCAAGGCAAGATCACATTTGCGAGACAAAGGCAAGAAAGCAATGACCACGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

786

Amino Acids

89.1

Weight (kDa)

5.19

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	16 - 155	5.8e-10	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	204 - 330	1.1e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8
PP2	PF14299	585 - 759	2e-46	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	189, 653, 1938
AarI	CACCTGC	3 cut(s)	276, 931, 1186
Acc36I	ACCTGC	3 cut(s)	276, 931, 1186
AccB7I	CCANNNNNTGG	1 cut(s)	1364
AciI	CCGC	8 cut(s)	5, 298, 444, 545, 992, 1127, 1160, 2077
AclWI	GGATC	4 cut(s)	435, 1375, 1600, 1613
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	6 cut(s)	19, 111, 790, 888, 895, 1579
AcuI	CTGAAG	3 cut(s)	383, 666, 896
AfaI	GTAC	4 cut(s)	1029, 1131, 1197, 1989
AfiI	CCNNNNNNNGG	6 cut(s)	11, 304, 1115, 1184, 1364, 1845
AflII	CTTAAG	1 cut(s)	1415
AjiI	CACGTC	1 cut(s)	1623
AjnI	CCWGG	2 cut(s)	1648, 1844
AloI	GAACNNNNNNTCC	2 cut(s)	2107, 2139
Alw21I	GWGCWC	3 cut(s)	261, 426, 825
Alw26I	GTCTC	4 cut(s)	209, 1229, 1926, 2322
AlwI	GGATC	4 cut(s)	435, 1375, 1600, 1613
AlwNI	CAGNNNCTG	3 cut(s)	64, 611, 1337
AoxI	GGCC	4 cut(s)	417, 963, 2273, 2298
ApeKI	GCWGC	7 cut(s)	541, 547, 605, 634, 1331, 1334, 1553
ApoI	RAATTY	6 cut(s)	19, 111, 790, 888, 895, 1579
Asp700I	GAANNNNTTC	2 cut(s)	228, 909
AspLEI	GCGC	1 cut(s)	1553
AsuC2I	CCSGG	2 cut(s)	1547, 2069
AsuHPI	GGTGA	4 cut(s)	107, 850, 1167, 2177
AsuII	TTCGAA	1 cut(s)	1377
BaeGI	GKGCMC	2 cut(s)	1783, 1839
BamHI	GGATCC	1 cut(s)	1605
BanII	GRGCYC	4 cut(s)	261, 426, 825, 1407
BarI	GAAGNNNNNNTAC	2 cut(s)	1661, 1693
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	101, 382, 1617
Bbv12I	GWGCWC	3 cut(s)	261, 426, 825
BbvI	GCAGC	7 cut(s)	528, 559, 617, 646, 1343, 1346, 1540
BccI	CCATC	6 cut(s)	5, 242, 526, 1354, 1933, 2105
BceAI	ACGGC	1 cut(s)	2158
BcgI	CGANNNNNNTGC	4 cut(s)	550, 584, 1350, 1384
BciT130I	CCWGG	2 cut(s)	1650, 1846
BclI	TGATCA	1 cut(s)	1150
BcnI	CCSGG	2 cut(s)	1547, 2069
BcoDI	GTCTC	4 cut(s)	209, 1229, 1926, 2322
BfaI	CTAG	4 cut(s)	99, 140, 392, 479
BfmI	CTRYAG	5 cut(s)	1179, 1506, 1554, 1965, 1992
BfoI	RGCGCY	1 cut(s)	1554
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	3 cut(s)	276, 931, 1186
BglII	AGATCT	1 cut(s)	2038
Bme1390I	CCNGG	4 cut(s)	1547, 1650, 1846, 2069
BmgBI	CACGTC	1 cut(s)	1623
BmiI	GGNNCC	1 cut(s)	1607
BmrFI	CCNGG	4 cut(s)	1547, 1650, 1846, 2069
BmrI	ACTGGG	2 cut(s)	1609, 1694
BmsI	GCATC	5 cut(s)	61, 126, 309, 1114, 1662
BmuI	ACTGGG	2 cut(s)	1609, 1694
BpiI	GAAGAC	3 cut(s)	101, 382, 1617
Bpu14I	TTCGAA	1 cut(s)	1377
BpuMI	CCSGG	2 cut(s)	1547, 2069
Bsa29I	ATCGAT	1 cut(s)	2109
BsaBI	GATNNNNATC	3 cut(s)	189, 703, 2043
BsaJI	CCNNGG	5 cut(s)	966, 1546, 1648, 1894, 2179
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 304, 1115, 1184, 1364, 1845
Bse1I	ACTGG	3 cut(s)	1615, 1700, 1823
Bse3DI	GCAATG	3 cut(s)	1057, 1396, 2352
Bse8I	GATNNNNATC	3 cut(s)	189, 703, 2043
BseBI	CCWGG	2 cut(s)	1650, 1846
BseCI	ATCGAT	1 cut(s)	2109
BseDI	CCNNGG	5 cut(s)	966, 1546, 1648, 1894, 2179
BseGI	GGATG	4 cut(s)	907, 1168, 1198, 1925
BseJI	GATNNNNATC	3 cut(s)	189, 703, 2043
BseLI	CCNNNNNNNGG	6 cut(s)	11, 304, 1115, 1184, 1364, 1845
BseMI	GCAATG	3 cut(s)	1057, 1396, 2352
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	3 cut(s)	1615, 1700, 1823
BseRI	GAGGAG	4 cut(s)	609, 1109, 1247, 1868
BseSI	GKGCMC	2 cut(s)	1783, 1839
BseXI	GCAGC	7 cut(s)	528, 559, 617, 646, 1343, 1346, 1540
BseYI	CCCAGC	1 cut(s)	2161
BshFI	GGCC	4 cut(s)	419, 965, 2275, 2300
BshVI	ATCGAT	1 cut(s)	2109
BsiHKAI	GWGCWC	3 cut(s)	261, 426, 825
BsiSI	CCGG	2 cut(s)	1546, 2069
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	6 cut(s)	11, 304, 1115, 1184, 1364, 1845
BsmAI	GTCTC	4 cut(s)	209, 1229, 1926, 2322
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	1078
BsmI	GAATGC	2 cut(s)	839, 1373
BsnI	GGCC	4 cut(s)	419, 965, 2275, 2300
Bsp119I	TTCGAA	1 cut(s)	1377
Bsp1286I	GDGCHC	6 cut(s)	261, 426, 825, 1407, 1783, 1839
Bsp1407I	TGTACA	1 cut(s)	1195
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	8 cut(s)	5, 298, 444, 545, 992, 1127, 1160, 2077
BspANI	GGCC	4 cut(s)	419, 965, 2275, 2300
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	2109
BspLI	GGNNCC	1 cut(s)	1607
BspMAI	CTGCAG	4 cut(s)	1183, 1510, 1558, 1969
BspMI	ACCTGC	3 cut(s)	276, 931, 1186
BspPI	GGATC	4 cut(s)	435, 1375, 1600, 1613
BspQI	GCTCTTC	1 cut(s)	926
BspT104I	TTCGAA	1 cut(s)	1377
BspTI	CTTAAG	1 cut(s)	1415
BsrDI	GCAATG	3 cut(s)	1057, 1396, 2352
BsrGI	TGTACA	1 cut(s)	1195
BsrI	ACTGG	3 cut(s)	1615, 1700, 1823
BssECI	CCNNGG	5 cut(s)	966, 1546, 1648, 1894, 2179
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	2 cut(s)	966, 2179
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	1650, 1846
Bst4CI	ACNGT	6 cut(s)	153, 271, 365, 381, 1524, 1874
Bst6I	CTCTTC	5 cut(s)	695, 732, 915, 926, 2234
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	1195
BstBI	TTCGAA	1 cut(s)	1377
BstC8I	GCNNGC	2 cut(s)	1359, 1516
BstDEI	CTNAG	5 cut(s)	281, 427, 525, 617, 840
BstDSI	CCRYGG	2 cut(s)	966, 1894
BstEII	GGTNACC	1 cut(s)	856
BstENI	CCTNNNNNAGG	1 cut(s)	1113
BstF5I	GGATG	4 cut(s)	907, 1168, 1198, 1925
BstH2I	RGCGCY	1 cut(s)	1554
BstHHI	GCGC	1 cut(s)	1553
BstMAI	GTCTC	4 cut(s)	209, 1229, 1926, 2322
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 321, 547, 611, 1725
BstNI	CCWGG	2 cut(s)	1650, 1846
BstNSI	RCATGY	1 cut(s)	1518
BstPI	GGTNACC	1 cut(s)	856
BstSCI	CCNGG	4 cut(s)	1545, 1648, 1844, 2067
BstSFI	CTRYAG	5 cut(s)	1179, 1506, 1554, 1965, 1992
BstSLI	GKGCMC	2 cut(s)	1783, 1839
BstV1I	GCAGC	7 cut(s)	528, 559, 617, 646, 1343, 1346, 1540
BstV2I	GAAGAC	3 cut(s)	101, 382, 1617
BstX2I	RGATCY	3 cut(s)	440, 1605, 2038
BstYI	RGATCY	3 cut(s)	440, 1605, 2038
Bsu15I	ATCGAT	1 cut(s)	2109
BsuRI	GGCC	4 cut(s)	419, 965, 2275, 2300
BsuTUI	ATCGAT	1 cut(s)	2109
BtgI	CCRYGG	2 cut(s)	966, 1894
BtgZI	GCGATG	1 cut(s)	1338
BtrI	CACGTC	1 cut(s)	1623
BtsCI	GGATG	4 cut(s)	907, 1168, 1198, 1925
BtsIMutI	CAGTG	3 cut(s)	642, 879, 1879
BveI	ACCTGC	3 cut(s)	276, 931, 1186
Cac8I	GCNNGC	2 cut(s)	1359, 1516
CaiI	CAGNNNCTG	3 cut(s)	64, 611, 1337
CfoI	GCGC	1 cut(s)	1553
ClaI	ATCGAT	1 cut(s)	2109
CseI	GACGC	4 cut(s)	191, 925, 1520, 1979
Csp6I	GTAC	4 cut(s)	1028, 1130, 1196, 1988
CspCI	CAANNNNNGTGG	2 cut(s)	1729, 1764
CviAII	CATG	5 cut(s)	967, 1163, 1450, 1515, 1787
CviQI	GTAC	4 cut(s)	1028, 1130, 1196, 1988
DdeI	CTNAG	5 cut(s)	281, 427, 525, 617, 840
DraI	TTTAAA	3 cut(s)	33, 109, 682
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	5 cut(s)	695, 732, 915, 926, 2234
EarI	CTCTTC	5 cut(s)	695, 732, 915, 926, 2234
EciI	GGCGGA	1 cut(s)	433
Ecl136II	GAGCTC	3 cut(s)	259, 424, 823
Eco130I	CCWWGG	2 cut(s)	966, 2179
Eco24I	GRGCYC	4 cut(s)	261, 426, 825, 1407
Eco32I	GATATC	3 cut(s)	295, 744, 1597
Eco53kI	GAGCTC	3 cut(s)	259, 424, 823
Eco57I	CTGAAG	3 cut(s)	383, 666, 896
Eco91I	GGTNACC	1 cut(s)	856
EcoICRI	GAGCTC	3 cut(s)	259, 424, 823
EcoNI	CCTNNNNNAGG	1 cut(s)	1113
EcoO65I	GGTNACC	1 cut(s)	856
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	1648, 1844
EcoRV	GATATC	3 cut(s)	295, 744, 1597
EcoT14I	CCWWGG	2 cut(s)	966, 2179
EcoT22I	ATGCAT	1 cut(s)	1478
EcoT38I	GRGCYC	4 cut(s)	261, 426, 825, 1407
ErhI	CCWWGG	2 cut(s)	966, 2179
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	5 cut(s)	970, 1166, 1453, 1518, 1790
FalI	AAGNNNNNCTT	2 cut(s)	1712, 1744
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	5 cut(s)	966, 1162, 1449, 1514, 1786
FauNDI	CATATG	1 cut(s)	1975
FbaI	TGATCA	1 cut(s)	1150
FokI	GGATG	4 cut(s)	914, 1155, 1205, 1912
FriOI	GRGCYC	4 cut(s)	261, 426, 825, 1407
FspBI	CTAG	4 cut(s)	99, 140, 392, 479
GlaI	GCGC	1 cut(s)	1552
GsaI	CCCAGC	1 cut(s)	2165
HaeII	RGCGCY	1 cut(s)	1554
HaeIII	GGCC	4 cut(s)	419, 965, 2275, 2300
HapII	CCGG	2 cut(s)	1546, 2069
HgaI	GACGC	4 cut(s)	191, 925, 1520, 1979
HhaI	GCGC	1 cut(s)	1553
Hin1II	CATG	5 cut(s)	970, 1166, 1453, 1518, 1790
Hin6I	GCGC	1 cut(s)	1551
HinP1I	GCGC	1 cut(s)	1551
HincII	GTYRAC	1 cut(s)	1645
HindII	GTYRAC	1 cut(s)	1645
HpaII	CCGG	2 cut(s)	1546, 2069
HphI	GGTGA	4 cut(s)	107, 850, 1167, 2177
Hpy166II	GTNNAC	5 cut(s)	265, 1198, 1620, 1645, 2140
Hpy188I	TCNGA	8 cut(s)	514, 675, 915, 1081, 1564, 1869, 2091, 2360
Hpy188III	TCNNGA	7 cut(s)	262, 667, 1592, 1800, 2042, 2048, 2096
Hpy8I	GTNNAC	5 cut(s)	265, 1198, 1620, 1645, 2140
Hpy99I	CGWCG	1 cut(s)	1568
HpyCH4III	ACNGT	6 cut(s)	153, 271, 365, 381, 1524, 1874
HpyCH4IV	ACGT	1 cut(s)	1622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 321, 547, 611, 1725
HpyF3I	CTNAG	5 cut(s)	281, 427, 525, 617, 840
HpySE526I	ACGT	1 cut(s)	1622
Hsp92II	CATG	5 cut(s)	970, 1166, 1453, 1518, 1790
HspAI	GCGC	1 cut(s)	1551
Ksp22I	TGATCA	1 cut(s)	1150
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	3 cut(s)	613, 828, 2158
Lsp1109I	GCAGC	7 cut(s)	528, 559, 617, 646, 1343, 1346, 1540
LweI	GCATC	5 cut(s)	61, 126, 309, 1114, 1662
MaeI	CTAG	4 cut(s)	99, 140, 392, 479
MaeII	ACGT	1 cut(s)	1622
MaeIII	GTNAC	3 cut(s)	856, 1691, 2048
MfeI	CAATTG	2 cut(s)	310, 1154
MflI	RGATCY	3 cut(s)	440, 1605, 2038
MhlI	GDGCHC	6 cut(s)	261, 426, 825, 1407, 1783, 1839
MmeI	TCCRAC	9 cut(s)	22, 196, 1165, 1224, 1345, 1587, 2130, 2181, 2216
Mph1103I	ATGCAT	1 cut(s)	1478
MroXI	GAANNNNTTC	2 cut(s)	228, 909
MseI	TTAA	7 cut(s)	32, 78, 108, 351, 681, 1260, 1416
MslI	CAYNNNNRTG	1 cut(s)	1454
MspA1I	CMGCKG	1 cut(s)	1337
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	2 cut(s)	1546, 2069
MspR9I	CCNGG	4 cut(s)	1547, 1650, 1846, 2069
MunI	CAATTG	2 cut(s)	310, 1154
Mva1269I	GAATGC	2 cut(s)	839, 1373
MvaI	CCWGG	2 cut(s)	1650, 1846
MwoI	GCNNNNNNNGC	5 cut(s)	306, 321, 547, 611, 1725
NciI	CCSGG	2 cut(s)	1547, 2069
NcoI	CCATGG	1 cut(s)	966
NdeI	CATATG	1 cut(s)	1975
NlaIII	CATG	5 cut(s)	970, 1166, 1453, 1518, 1790
NlaIV	GGNNCC	1 cut(s)	1607
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	3 cut(s)	856, 1691, 2048
NsiI	ATGCAT	1 cut(s)	1478
NspI	RCATGY	1 cut(s)	1518
NspV	TTCGAA	1 cut(s)	1377
PaeI	GCATGC	1 cut(s)	1518
PaqCI	CACCTGC	3 cut(s)	276, 931, 1186
PciSI	GCTCTTC	1 cut(s)	926
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	2 cut(s)	839, 1373
PdmI	GAANNNNTTC	2 cut(s)	228, 909
PflFI	GACNNNGTC	1 cut(s)	1268
PflMI	CCANNNNNTGG	1 cut(s)	1364
PsiI	TTATAA	3 cut(s)	189, 653, 1938
Psp124BI	GAGCTC	3 cut(s)	261, 426, 825
Psp6I	CCWGG	2 cut(s)	1648, 1844
PspEI	GGTNACC	1 cut(s)	856
PspFI	CCCAGC	1 cut(s)	2161
PspGI	CCWGG	2 cut(s)	1648, 1844
PspN4I	GGNNCC	1 cut(s)	1607
PstI	CTGCAG	4 cut(s)	1183, 1510, 1558, 1969
PstNI	CAGNNNCTG	3 cut(s)	64, 611, 1337
PsuI	RGATCY	3 cut(s)	440, 1605, 2038
PsyI	GACNNNGTC	1 cut(s)	1268
PvuII	CAGCTG	1 cut(s)	1337
RsaI	GTAC	4 cut(s)	1029, 1131, 1197, 1989
RsaNI	GTAC	4 cut(s)	1028, 1130, 1196, 1988
RseI	CAYNNNNRTG	1 cut(s)	1454
SacI	GAGCTC	3 cut(s)	261, 426, 825
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	7 cut(s)	32, 78, 108, 351, 681, 1260, 1416
ScrFI	CCNGG	4 cut(s)	1547, 1650, 1846, 2069
SduI	GDGCHC	6 cut(s)	261, 426, 825, 1407, 1783, 1839
SfaNI	GCATC	5 cut(s)	61, 126, 309, 1114, 1662
SfcI	CTRYAG	5 cut(s)	1179, 1506, 1554, 1965, 1992
SfuI	TTCGAA	1 cut(s)	1377
SmiMI	CAYNNNNRTG	1 cut(s)	1454
SmlI	CTYRAG	1 cut(s)	1415
SmoI	CTYRAG	1 cut(s)	1415
SphI	GCATGC	1 cut(s)	1518
SsiI	CCGC	8 cut(s)	5, 298, 444, 545, 992, 1127, 1160, 2077
SspI	AATATT	2 cut(s)	370, 2291
SspMI	CTAG	4 cut(s)	99, 140, 392, 479
SstI	GAGCTC	3 cut(s)	261, 426, 825
StyD4I	CCNGG	4 cut(s)	1545, 1648, 1844, 2067
StyI	CCWWGG	2 cut(s)	966, 2179
TaaI	ACNGT	6 cut(s)	153, 271, 365, 381, 1524, 1874
TaiI	ACGT	1 cut(s)	1625
TaqI	TCGA	7 cut(s)	222, 1377, 1529, 1683, 1710, 1984, 2109
TatI	WGTACW	1 cut(s)	1195
TauI	GCSGC	4 cut(s)	7, 547, 995, 1162
Tru1I	TTAA	7 cut(s)	32, 78, 108, 351, 681, 1260, 1416
Tru9I	TTAA	7 cut(s)	32, 78, 108, 351, 681, 1260, 1416
TscAI	CASTG	3 cut(s)	649, 886, 1879
TseFI	GTSAC	3 cut(s)	856, 1691, 2048
TseI	GCWGC	7 cut(s)	541, 547, 605, 634, 1331, 1334, 1553
Tsp45I	GTSAC	3 cut(s)	856, 1691, 2048
TspGWI	ACGGA	3 cut(s)	190, 1581, 1883
TspRI	CASTG	3 cut(s)	649, 886, 1879
Tth111I	GACNNNGTC	1 cut(s)	1268
Van91I	CCANNNNNTGG	1 cut(s)	1364
Vha464I	CTTAAG	1 cut(s)	1415
XagI	CCTNNNNNAGG	1 cut(s)	1113
XapI	RAATTY	6 cut(s)	19, 111, 790, 888, 895, 1579
XceI	RCATGY	1 cut(s)	1518
XmnI	GAANNNNTTC	2 cut(s)	228, 909
XspI	CTAG	4 cut(s)	99, 140, 392, 479
Zsp2I	ATGCAT	1 cut(s)	1478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.