Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00594

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

69673 .. 72331

Gene Structure 2659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGCCCAACTAGACTTGGAGGGTAAGAAAAATATCACCGATCTTTTAAGTTTGGAAATTGCCAACCAGAACAGACTAGATAAATTGGATAAGAACGTACAAATTCTTTTGGATAGACAGCAAAAAATGTATGATATGATGGAACAGAATAGAGCAATAGGGAGAGATACTGTATGGATTCATAGTGTTCAACAGGTTGCATCTTCTAGTGGAGGAGGAGCTACTCCTGCCCCATCTCTAGGTGTAGTATTCCAGCAACTGTTTGATGTAGTTATAAAAGTAAGCGTCAAGCATATGATGTTTAAACGCCTCCTCGAAAGATTCAAATCCACGCTGCACTGCTTACAACCACTGATAGAAGAGATAGCAAAAAACAACAGGATATTGCATCTTCCAAAGGAAGAAGTGAAAAATCTTACTACACAATTAAAGAATGGTGCAGAACTCGTTCACAAATGCTCCAAGGTTCGCAAGAGGGCCAACTACAAAAAGAACGAATACAGCACCAAAATTCTGAATTTGAACAACTTTCTTCAAAGGCTCTTCGTTCGAATGAAAGCGCAGGTGGAAAAGAATGTGAATGAGGCTTTGGATTCAGCAAACAAAATAGAGGCGGTGATCAAGAACATTGAAGCTGGCGGTGTAGTAAAAATTGATGATGTCGGAAGTAAGGGTCACAATCCAGTAGAACCTGGATCACCTACAGTTGGACGAGATGTACATCAATTCAACGTGCAGGGACCAAGGGATGTGATTAAGGAGACATTGGTGGATTCGGCAAGGATTCTTATAGATCAGAAGGGGGTGAAGCCTAATGAAGGGAGTGATGTGGTACAAAACCAAATAGAAACTGCAGTTGGATTGAATGTACTGAGTTTGCAAGAATCGACGGAGGTGGAGACATTGGATTCAACTGCCAGAAATATGGAGCTTGTTGATTCAACAAGGACTGTGAAGGGGTCATTGGAGTTTGCAAGGAATACAGACAAGATGGGAGTCAACAAGATTGAAGGAAGTGGTGAAAGTCCAATTAAAATTGCAGTAGCTTCTGAAACTGAACCTCCTTCCCTTACAGTTAGGGATGTGTCGAGGAATGTTAAAAAGGCGGGAGATCTCAAGCAAATTGAATGTGAAATTGCAACAGTTGAACCTCTTTGTTCATCGCCTGCAGTTAGGTTGACATTGGATTCGACAAGCAATGCAAAGGTGGGTCTCAAACAATCTGAAAAGGAAAAGACTACTCTTGAATACATGCAGGAAGCAGTGTTGGAGCATCTCAAATTGAGACCGAATGCTAGAACGAAACCGATTAAGAAAGTAAGTCATGTAACTAAAATAGAAAAAAAAAACTATAAAAAAAAACATAATATTTCATGGCATTTTGTTATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

464

Amino Acids

51.88

Weight (kDa)

9.26

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	79 - 194	1e-23	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AciI	CCGC	3 cut(s)	614, 639, 1106
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	3 cut(s)	102, 510, 517
AfaI	GTAC	4 cut(s)	99, 720, 834, 870
AfiI	CCNNNNNNNGG	3 cut(s)	239, 707, 818
AjnI	CCWGG	1 cut(s)	691
AjuI	GAANNNNNNNTTGG	6 cut(s)	572, 604, 840, 872, 947, 979
AluBI	AGCT	4 cut(s)	221, 635, 931, 1046
AluI	AGCT	4 cut(s)	221, 635, 931, 1046
Alw26I	GTCTC	4 cut(s)	755, 893, 1217, 1279
AlwI	GGATC	1 cut(s)	703
AlwNI	CAGNNNCTG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	3, 477
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	3 cut(s)	102, 510, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	1171, 1203
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	4, 477, 740
AsuHPI	GGTGA	5 cut(s)	28, 628, 690, 817, 1031
AsuII	TTCGAA	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	740
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	133, 241, 985
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	4 cut(s)	755, 893, 1217, 1279
BfaI	CTAG	5 cut(s)	11, 77, 207, 239, 1296
BfmI	CTRYAG	3 cut(s)	702, 852, 1167
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	1111
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	4, 477, 740
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	209, 397, 1282
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	1100
BsaBI	GATNNNNATC	2 cut(s)	325, 720
BsaI	GGTCTC	2 cut(s)	1217, 1279
BsaJI	CCNNGG	2 cut(s)	462, 743
BsaXI	ACNNNNNCTCC	4 cut(s)	443, 473, 1045, 1075
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 707, 818
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	1204
Bse8I	GATNNNNATC	2 cut(s)	325, 720
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	462, 743
BseGI	GGATG	2 cut(s)	754, 1087
BseJI	GATNNNNATC	2 cut(s)	325, 720
BseLI	CCNNNNNNNGG	3 cut(s)	239, 707, 818
BseMI	GCAATG	1 cut(s)	1204
BseMII	CTCAG	1 cut(s)	863
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	3 cut(s)	228, 231, 302
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	3 cut(s)	320, 459, 755
BshFI	GGCC	2 cut(s)	5, 479
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	3 cut(s)	239, 707, 818
BsmAI	GTCTC	4 cut(s)	755, 893, 1217, 1279
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	1297
BsnI	GGCC	2 cut(s)	5, 479
Bso31I	GGTCTC	2 cut(s)	1217, 1279
Bsp119I	TTCGAA	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	5 cut(s)	40, 618, 695, 793, 1111
BspACI	CCGC	3 cut(s)	614, 639, 1106
BspANI	GGCC	2 cut(s)	5, 479
BspCNI	CTCAG	1 cut(s)	864
BspLI	GGNNCC	1 cut(s)	741
BspMAI	CTGCAG	2 cut(s)	856, 1171
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	548
BspT104I	TTCGAA	1 cut(s)	550
BspTNI	GGTCTC	2 cut(s)	1217, 1279
BsrDI	GCAATG	1 cut(s)	1204
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	2 cut(s)	462, 743
BssMI	GATC	5 cut(s)	40, 618, 695, 793, 1111
BssT1I	CCWWGG	2 cut(s)	462, 743
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	6 cut(s)	172, 261, 706, 952, 1075, 1144
Bst6I	CTCTTC	2 cut(s)	354, 548
BstAUI	TGTACA	1 cut(s)	718
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	637, 1167
BstDEI	CTNAG	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	2 cut(s)	754, 1087
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	5 cut(s)	43, 621, 698, 796, 1114
BstMAI	GTCTC	4 cut(s)	755, 893, 1217, 1279
BstMBI	GATC	5 cut(s)	40, 618, 695, 793, 1111
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	1255
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	3 cut(s)	702, 852, 1167
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	1111
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	1111
BsuRI	GGCC	2 cut(s)	5, 479
BtgZI	GCGATG	1 cut(s)	1146
BtsCI	GGATG	2 cut(s)	754, 1087
BtsI	GCAGTG	2 cut(s)	337, 1269
BtsIMutI	CAGTG	3 cut(s)	337, 350, 1269
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	637, 1167
CaiI	CAGNNNCTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	4, 477, 740
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	98, 719, 833, 869
CviAII	CATG	3 cut(s)	1252, 1325, 1374
CviJI	RGCY	9 cut(s)	5, 221, 479, 541, 587, 635, 811, 931, 1046
CviKI_1	RGCY	9 cut(s)	5, 221, 479, 541, 587, 635, 811, 931, 1046
CviQI	GTAC	4 cut(s)	98, 719, 833, 869
DdeI	CTNAG	1 cut(s)	872
DpnI	GATC	5 cut(s)	42, 620, 697, 795, 1113
DpnII	GATC	5 cut(s)	40, 618, 695, 793, 1111
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	354, 548
EarI	CTCTTC	2 cut(s)	354, 548
Eco130I	CCWWGG	2 cut(s)	462, 743
Eco31I	GGTCTC	2 cut(s)	1217, 1279
Eco47I	GGWCC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	462, 743
ErhI	CCWWGG	2 cut(s)	462, 743
FaeI	CATG	3 cut(s)	1255, 1328, 1377
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	3 cut(s)	1251, 1324, 1373
FauI	CCCGC	1 cut(s)	1099
FauNDI	CATATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	2 cut(s)	761, 1094
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	5 cut(s)	11, 77, 207, 239, 1296
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	5, 479
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	3 cut(s)	1255, 1328, 1377
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	2 cut(s)	1000, 1179
HindII	GTYRAC	2 cut(s)	1000, 1179
HphI	GGTGA	5 cut(s)	28, 628, 690, 817, 1031
Hpy166II	GTNNAC	3 cut(s)	451, 1000, 1179
Hpy188I	TCNGA	5 cut(s)	516, 665, 798, 1051, 1225
Hpy188III	TCNNGA	2 cut(s)	622, 1244
Hpy8I	GTNNAC	3 cut(s)	451, 1000, 1179
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	5 cut(s)	793, 812, 949, 1004, 1074
HpyCH4III	ACNGT	6 cut(s)	172, 261, 706, 952, 1075, 1144
HpyCH4IV	ACGT	2 cut(s)	96, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	872
HpySE526I	ACGT	2 cut(s)	96, 732
Hsp92II	CATG	3 cut(s)	1255, 1328, 1377
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	40, 618, 695, 793, 1111
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	4 cut(s)	218, 464, 928, 1270
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	209, 397, 1282
MaeI	CTAG	5 cut(s)	11, 77, 207, 239, 1296
MaeII	ACGT	2 cut(s)	96, 732
MaeIII	GTNAC	2 cut(s)	674, 1327
MalI	GATC	5 cut(s)	42, 620, 697, 795, 1113
MboI	GATC	5 cut(s)	40, 618, 695, 793, 1111
MboII	GAAGA	6 cut(s)	195, 371, 383, 413, 524, 535
MflI	RGATCY	1 cut(s)	1111
MlyI	GAGTC	1 cut(s)	1005
MmeI	TCCRAC	4 cut(s)	643, 688, 838, 1248
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1311
MspR9I	CCNGG	1 cut(s)	693
MssI	GTTTAAAC	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	1297
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	5 cut(s)	40, 618, 695, 793, 1111
NlaIII	CATG	3 cut(s)	1255, 1328, 1377
NlaIV	GGNNCC	1 cut(s)	741
NmuCI	GTSAC	1 cut(s)	674
NspI	RCATGY	1 cut(s)	1255
NspV	TTCGAA	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	1297
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	9 cut(s)	178, 321, 593, 773, 784, 884, 908, 938, 1187
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	1004
PmeI	GTTTAAAC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	1004
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	3 cut(s)	4, 477, 740
PstI	CTGCAG	2 cut(s)	856, 1171
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	1111
RsaI	GTAC	4 cut(s)	99, 720, 834, 870
RsaNI	GTAC	4 cut(s)	98, 719, 833, 869
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1311
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	5 cut(s)	40, 618, 695, 793, 1111
Sau96I	GGNCC	3 cut(s)	4, 477, 740
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	209, 397, 1282
SfcI	CTRYAG	3 cut(s)	702, 852, 1167
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	1115
SmoI	CTYRAG	1 cut(s)	1115
SsiI	CCGC	3 cut(s)	614, 639, 1106
SspI	AATATT	1 cut(s)	1369
SspMI	CTAG	5 cut(s)	11, 77, 207, 239, 1296
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	2 cut(s)	462, 743
TaaI	ACNGT	6 cut(s)	172, 261, 706, 952, 1075, 1144
TaiI	ACGT	2 cut(s)	99, 735
TaqI	TCGA	5 cut(s)	315, 550, 887, 1088, 1190
TaqII	GACCGA	1 cut(s)	1303
TatI	WGTACW	2 cut(s)	718, 868
TfiI	GAWTC	9 cut(s)	178, 321, 593, 773, 784, 884, 908, 938, 1187
Tru1I	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1311
Tru9I	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1311
TscAI	CASTG	3 cut(s)	344, 357, 1269
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	5 cut(s)	170, 569, 831, 1149, 1362
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	3 cut(s)	344, 357, 1269
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	816
XapI	RAATTY	3 cut(s)	102, 510, 517
XceI	RCATGY	1 cut(s)	1255
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	5 cut(s)	11, 77, 207, 239, 1296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.