Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00594

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

7769 .. 8701

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAGAAACACAGTGAAACAGAAATCATAATGCAAGTGGCTTTTCCCGAAGAATGCATTGGCAACATCATCTCACTGACCACTCCTGCAGATGCCTGCAGACTGTCATCGGTTTCTAGGAGTTTCAAGTACGCTGCAGAATCCGACGAAGTTTGGGAAAAGTTCCTTACCAGTCCGCATCTTATCCATGCTATCCAATCCCAGTCCACGTCTTCATCTACATTAATCCCTGCCAAATCCAAGAAGGAGTTTTACCTCGCTCTCTGTAACAACCCAGTCCTCATTGATAATGGGAAGATGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTATATGATATGTGCAAGGGAGCTTTTTATTGTTTGGGCAGGAGATAAATCTAGATACTGGACATGGATTTCTCTAGCTGAGTCCAGGTTTGAGAAGGTGGCTTCTCTAGACAGTGTTTGTTGGCTCGAAATACGTGGGAAAATTGATATGAGTATTCTGTCTCCATGGACTCTCTACAAAGCTTATCTTGTGTACAAGCTAACTGAAGACGCATATGGATTCGACGTGCCTGTGGAGGTCGCAATTGGTGCAAGGCATTATGGATTTGAATACGGACCTCTGGATGCCGCACTTGGTGGAGATGAAAACAAGCAGACAGTGTATCTGGATCCAAATATGCAAATTATCGATGGAGCTCGACGTCCAAAGGAAAGAGTGGACGGCTGGTTGGAGATGGAGCTGGGTGAGTTTCTATGCCAAGCAGAAGAAGATGGGGAGTTGGAAATGATGTGTGCGGAGGTTAAAGATCTGTGTTGGAAGAGTGGTCTTATTGTGCAAGGAATTGAGGTCAGGCCAGAAAGAAAGGAATATTGCGAGGCCAAAGGCAAGGCAAGAAGATCAAATTTCTGGGCCAAAGGCAAGAAAGCAATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

310

Amino Acids

35.24

Weight (kDa)

5.49

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 54	2.9e-06	F-box domain
PP2	PF14299	110 - 284	3.2e-51	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	700
AciI	CCGC	3 cut(s)	176, 624, 791
AclWI	GGATC	2 cut(s)	659, 672
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	697
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	2 cut(s)	131, 530
AgsI	TTSAA	2 cut(s)	127, 605
AjiI	CACGTC	2 cut(s)	210, 562
AjnI	CCWGG	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	7 cut(s)	303, 358, 413, 518, 535, 692, 736
AluI	AGCT	7 cut(s)	303, 358, 413, 518, 535, 692, 736
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	659, 672
AoxI	GGCC	3 cut(s)	848, 873, 906
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	898
AseI	ATTAAT	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	611, 906
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	694
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	204, 549
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	680, 724, 761
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	4 cut(s)	117, 387, 410, 443
BfmI	CTRYAG	3 cut(s)	87, 97, 135
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	2 cut(s)	135, 624
BlsI	GCNGC	2 cut(s)	136, 625
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	611
BmgBI	CACGTC	2 cut(s)	210, 562
BmgT120I	GGNCC	2 cut(s)	611, 906
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	2 cut(s)	196, 269
BmsI	GCATC	3 cut(s)	82, 187, 610
BmuI	ACTGGG	2 cut(s)	196, 269
BpiI	GAAGAC	2 cut(s)	204, 549
Bsa29I	ATCGAT	1 cut(s)	684
BsaAI	YACGTR	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	500
Bse1I	ACTGG	5 cut(s)	171, 202, 275, 315, 398
Bse3DI	GCAATG	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	1 cut(s)	625
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	5 cut(s)	171, 202, 275, 315, 398
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	736
BshFI	GGCC	3 cut(s)	850, 875, 908
BshVI	ATCGAT	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	694
BsmAI	GTCTC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	850, 875, 908
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	664, 802, 893
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	3 cut(s)	176, 624, 791
BspANI	GGCC	3 cut(s)	850, 875, 908
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	666
BspMAI	CTGCAG	3 cut(s)	91, 101, 139
BspPI	GGATC	2 cut(s)	659, 672
BsrDI	GCAATG	1 cut(s)	930
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	5 cut(s)	171, 202, 275, 315, 398
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	3 cut(s)	664, 802, 893
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	4 cut(s)	14, 105, 449, 655
Bst6I	CTCTTC	1 cut(s)	809
BstACI	GRCGYC	1 cut(s)	697
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	625
BstKTI	GATC	3 cut(s)	667, 805, 896
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	3 cut(s)	664, 802, 893
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	3 cut(s)	87, 97, 135
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	2 cut(s)	204, 549
BstX2I	RGATCY	2 cut(s)	664, 802
BstYI	RGATCY	2 cut(s)	664, 802
Bsu15I	ATCGAT	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	850, 875, 908
BsuTUI	ATCGAT	1 cut(s)	684
BtgI	CCRYGG	1 cut(s)	500
BtrI	CACGTC	2 cut(s)	210, 562
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	5 cut(s)	19, 74, 308, 454, 660
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	611, 906
ClaI	ATCGAT	1 cut(s)	684
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	130, 529
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	188, 399, 501, 930
CviQI	GTAC	2 cut(s)	130, 529
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	666, 804, 895
DpnII	GATC	3 cut(s)	664, 802, 893
DraIII	CACNNNGTG	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
Ecl136II	GAGCTC	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	500
EcoT22I	ATGCAT	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	4 cut(s)	191, 402, 504, 933
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 507, 539
FatI	CATG	4 cut(s)	187, 398, 500, 929
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	135, 624
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	2 cut(s)	135, 624
FspBI	CTAG	4 cut(s)	117, 387, 410, 443
GluI	GCNGC	2 cut(s)	135, 624
GsaI	CCCAGC	1 cut(s)	740
HaeIII	GGCC	3 cut(s)	850, 875, 908
HgaI	GACGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	4 cut(s)	191, 402, 504, 933
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	4 cut(s)	140, 416, 505, 555
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	3 cut(s)	207, 529, 715
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	5 cut(s)	47, 387, 443, 617, 662
Hpy8I	GTNNAC	3 cut(s)	207, 529, 715
Hpy99I	CGWCG	3 cut(s)	149, 563, 699
HpyAV	CCTTC	2 cut(s)	238, 424
HpyCH4III	ACNGT	4 cut(s)	14, 105, 449, 655
HpyCH4IV	ACGT	4 cut(s)	209, 469, 561, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	4 cut(s)	209, 469, 561, 697
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	4 cut(s)	191, 402, 504, 933
Kzo9I	GATC	3 cut(s)	664, 802, 893
LmnI	GCTCC	3 cut(s)	355, 689, 733
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	3 cut(s)	82, 187, 610
MaeI	CTAG	4 cut(s)	117, 387, 410, 443
MaeII	ACGT	4 cut(s)	209, 469, 561, 697
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	3 cut(s)	666, 804, 895
MboI	GATC	3 cut(s)	664, 802, 893
MboII	GAAGA	8 cut(s)	62, 204, 307, 554, 773, 776, 826, 903
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	2 cut(s)	664, 802
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	5 cut(s)	477, 579, 678, 837, 898
MlyI	GAGTC	2 cut(s)	425, 499
MmeI	TCCRAC	4 cut(s)	168, 705, 756, 791
MnlI	CCTC	7 cut(s)	266, 290, 565, 624, 787, 835, 865
Mph1103I	ATGCAT	1 cut(s)	59
MseI	TTAA	2 cut(s)	224, 798
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	584
NcoI	CCATGG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	3 cut(s)	664, 802, 893
NlaIII	CATG	4 cut(s)	191, 402, 504, 933
NlaIV	GGNNCC	1 cut(s)	666
NsiI	ATGCAT	1 cut(s)	59
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	140, 555
PkrI	GCNGC	2 cut(s)	136, 625
PleI	GAGTC	2 cut(s)	424, 499
PpsI	GAGTC	2 cut(s)	424, 499
Ppu21I	YACGTR	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	2 cut(s)	611, 906
PstI	CTGCAG	3 cut(s)	91, 101, 139
PsuI	RGATCY	2 cut(s)	664, 802
RsaI	GTAC	2 cut(s)	131, 530
RsaNI	GTAC	2 cut(s)	130, 529
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	2 cut(s)	224, 798
SatI	GCNGC	2 cut(s)	135, 624
Sau3AI	GATC	3 cut(s)	664, 802, 893
Sau96I	GGNCC	2 cut(s)	611, 906
SchI	GAGTC	2 cut(s)	425, 499
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	3 cut(s)	82, 187, 610
SfcI	CTRYAG	3 cut(s)	87, 97, 135
SinI	GGWCC	1 cut(s)	611
Sse9I	AATT	5 cut(s)	477, 579, 678, 837, 898
SsiI	CCGC	3 cut(s)	176, 624, 791
SspI	AATATT	1 cut(s)	866
SspMI	CTAG	4 cut(s)	117, 387, 410, 443
SstI	GAGCTC	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	4 cut(s)	14, 105, 449, 655
TaiI	ACGT	4 cut(s)	212, 472, 564, 700
TaqI	TCGA	4 cut(s)	462, 558, 684, 694
TasI	AATT	5 cut(s)	477, 579, 678, 837, 898
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	2 cut(s)	140, 555
Tru1I	TTAA	2 cut(s)	224, 798
Tru9I	TTAA	2 cut(s)	224, 798
TscAI	CASTG	5 cut(s)	19, 81, 315, 454, 660
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	204, 654
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	5 cut(s)	19, 81, 315, 454, 660
VpaK11BI	GGWCC	1 cut(s)	611
VspI	ATTAAT	1 cut(s)	224
XapI	RAATTY	1 cut(s)	898
XbaI	TCTAGA	2 cut(s)	386, 442
XspI	CTAG	4 cut(s)	117, 387, 410, 443
ZraI	GACGTC	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.