Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007722.1

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

49384 .. 50328

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007722.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgcaggaacaccgtcaaacagaaatcatcatgcaaacgatgacgtttccagaagaatgcctagtcgacatcatttcattcaccactcctgcagatgtctgcagactgtcctcgatttccaggagtttcaagatggcaggagaagccgacgaagtttgggaaaaattccttcctccccaacatgatatcgacacaatcctgtcgcagtccacatctgcatctacatcagcagcggctgccgaattcaaggtatccaaaaaggagctttacctcgctctctgcgacaaatcagtcctcatcgacaatgggaagatgagcttttttctggacaaatggaatgggaaaaaatgttacatgatatctgcaagggccctttatattgtttgggcagaagagaaatctaatcaatactggacatggatttgtgtgcctgagtccagatttaaggacgtggtttatctagagagtgtttgttggatcgaaatccacgggagaattgatatgaggatgctgtcttcagccactctatataaagcttaccttgtgtacaagctaactgcagaggcatatggattaaaagctcctgtacaggtcgcaactcaagtagggcattatggattaggttacggggatctggccattgaaatatatgagaataggcagaaagggtttctttatcctgctaaacaagtcagtggagttcgatctccaaaggaaagagtggacggttggttggagatagagctgggtgagtttctatgccgaggagaagatgattcgcaggtggacatgatatgtgtagaaattgacgatctgtgttggaagaagggtctagttgtggaaggaatagaggtcaggccagaaagaaaggaatactgcgagcgcaaaggcaaggcaagggcgaaagagcgagccaaaggcaagagagcaatgaccatgatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

314

Amino Acids

35.95

Weight (kDa)

5.97

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	772
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	772
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	2 cut(s)	485, 639
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	2 cut(s)	164, 242
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	2 cut(s)	548, 588
AgsI	TTSAA	3 cut(s)	130, 247, 644
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	6 cut(s)	265, 318, 536, 553, 581, 745
AluI	AGCT	6 cut(s)	265, 318, 536, 553, 581, 745
AlwI	GGATC	2 cut(s)	485, 639
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	369, 636, 857
ApaI	GGGCCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	230, 236
ApoI	RAATTY	2 cut(s)	164, 242
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	2 cut(s)	369, 370
AsuHPI	GGTGA	2 cut(s)	73, 761
BaeGI	GKGCMC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	223, 242
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	262
BfaI	CTAG	3 cut(s)	62, 461, 833
BfmI	CTRYAG	3 cut(s)	90, 100, 558
BfuAI	ACCTGC	1 cut(s)	772
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	231, 234, 237
BlsI	GCNGC	3 cut(s)	232, 235, 238
Bme1390I	CCNGG	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	369, 370
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	227, 498
BpiI	GAAGAC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	487, 763
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	487, 763
BseGI	GGATG	1 cut(s)	513
BseJI	GATNNNNATC	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	223, 242
BseYI	CCCAGC	1 cut(s)	745
BshFI	GGCC	3 cut(s)	371, 638, 859
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	371, 638, 859
Bsp120I	GGGCCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp1407I	TGTACA	2 cut(s)	546, 586
Bsp143I	GATC	5 cut(s)	477, 631, 704, 811, 939
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	371, 638, 859
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	3 cut(s)	94, 104, 562
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	2 cut(s)	485, 639
BsrDI	GCAATG	1 cut(s)	936
BsrGI	TGTACA	2 cut(s)	546, 586
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	487, 763
BssMI	GATC	5 cut(s)	477, 631, 704, 811, 939
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	3 cut(s)	14, 108, 728
Bst6I	CTCTTC	1 cut(s)	387
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstAUI	TGTACA	2 cut(s)	546, 586
BstC8I	GCNNGC	2 cut(s)	881, 912
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	5 cut(s)	480, 634, 707, 814, 942
BstMBI	GATC	5 cut(s)	477, 631, 704, 811, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 236
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	3 cut(s)	90, 100, 558
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	223, 242
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	371, 638, 859
BtgI	CCRYGG	1 cut(s)	487
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	700
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	2 cut(s)	881, 912
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	885
Cfr13I	GGNCC	2 cut(s)	369, 370
Csp6I	GTAC	2 cut(s)	547, 587
CviAII	CATG	6 cut(s)	31, 182, 355, 417, 790, 937
CviQI	GTAC	2 cut(s)	547, 587
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	5 cut(s)	479, 633, 706, 813, 941
DpnII	GATC	5 cut(s)	477, 631, 704, 811, 939
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	373
Eco32I	GATATC	2 cut(s)	187, 360
Eco57I	CTGAAG	1 cut(s)	501
EcoO109I	RGGNCCY	2 cut(s)	369, 370
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	119
EcoRV	GATATC	2 cut(s)	187, 360
EcoT38I	GRGCYC	1 cut(s)	373
FaeI	CATG	6 cut(s)	34, 185, 358, 420, 793, 940
FalI	AAGNNNNNCTT	6 cut(s)	302, 334, 525, 557, 657, 689
FatI	CATG	6 cut(s)	30, 181, 354, 416, 789, 936
FauNDI	CATATG	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	231, 234, 237
FokI	GGATG	1 cut(s)	520
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	231, 234, 237
FspBI	CTAG	3 cut(s)	62, 461, 833
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	3 cut(s)	231, 234, 237
GsaI	CCCAGC	1 cut(s)	749
HaeIII	GGCC	3 cut(s)	371, 638, 859
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	6 cut(s)	34, 185, 358, 420, 793, 940
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	2 cut(s)	434, 776
HphI	GGTGA	2 cut(s)	73, 761
Hpy166II	GTNNAC	5 cut(s)	67, 210, 547, 724, 787
Hpy188I	TCNGA	1 cut(s)	944
Hpy188III	TCNNGA	5 cut(s)	50, 130, 326, 438, 461
Hpy8I	GTNNAC	5 cut(s)	67, 210, 547, 724, 787
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	179, 820, 836
HpyCH4III	ACNGT	3 cut(s)	14, 108, 728
HpyCH4IV	ACGT	2 cut(s)	44, 450
HpyCH4V	TGCA	7 cut(s)	4, 34, 92, 102, 218, 365, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 236
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	2 cut(s)	44, 450
Hsp92II	CATG	6 cut(s)	34, 185, 358, 420, 793, 940
HspAI	GCGC	1 cut(s)	883
Kzo9I	GATC	5 cut(s)	477, 631, 704, 811, 939
LmnI	GCTCC	2 cut(s)	262, 586
Lsp1109I	GCAGC	2 cut(s)	223, 242
LweI	GCATC	2 cut(s)	227, 498
MaeI	CTAG	3 cut(s)	62, 461, 833
MaeII	ACGT	2 cut(s)	44, 450
MaeIII	GTNAC	2 cut(s)	350, 623
MalI	GATC	5 cut(s)	479, 633, 706, 813, 941
MboI	GATC	5 cut(s)	477, 631, 704, 811, 939
MboII	GAAGA	6 cut(s)	65, 322, 404, 507, 782, 835
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	4 cut(s)	164, 242, 495, 804
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	3 cut(s)	455, 714, 800
MnlI	CCTC	8 cut(s)	121, 183, 281, 305, 498, 556, 758, 844
Mox20I	TGGCCA	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	2 cut(s)	444, 575
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	143, 236
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	5 cut(s)	477, 631, 704, 811, 939
NlaIII	CATG	6 cut(s)	34, 185, 358, 420, 793, 940
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	788
PaqCI	CACCTGC	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	776
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	232, 235, 238
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	371
PspOMI	GGGCCC	1 cut(s)	369
PspPI	GGNCC	2 cut(s)	369, 370
PstI	CTGCAG	3 cut(s)	94, 104, 562
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	548, 588
RsaNI	GTAC	2 cut(s)	547, 587
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	444, 575
SatI	GCNGC	3 cut(s)	231, 234, 237
Sau3AI	GATC	5 cut(s)	477, 631, 704, 811, 939
Sau96I	GGNCC	2 cut(s)	369, 370
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	2 cut(s)	227, 498
SfcI	CTRYAG	3 cut(s)	90, 100, 558
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	4 cut(s)	164, 242, 495, 804
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	3 cut(s)	62, 461, 833
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	3 cut(s)	14, 108, 728
TaiI	ACGT	2 cut(s)	47, 453
TaqI	TCGA	6 cut(s)	66, 113, 189, 300, 480, 703
TasI	AATT	4 cut(s)	164, 242, 495, 804
TatI	WGTACW	2 cut(s)	546, 586
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	2 cut(s)	444, 575
Tru9I	TTAA	2 cut(s)	444, 575
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	2 cut(s)	230, 236
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	700
XapI	RAATTY	2 cut(s)	164, 242
XbaI	TCTAGA	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	3 cut(s)	62, 461, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.