Rh2DG187800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003685
Physical Location & Seq
Forward (+)
16771213 .. 16773128
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG187800.1

Sequence Viewer

Length: 414 bp
ATGTCAGCTGAAATGGGAAGGTCAAGTGAAATGGAATCAACTAGAGGGCAACTCAATTTGAATCCAACAACAGTGGGAGTAGAAGCCAATGAGCAGCTTGTGGTTTTGGACCGAGCAAAAAAGAGATTGTACTGGCATCGCATCTTAGGAATGCATACATCGCATTCCCAAGAAATTGATGAAGCTCCATATCCGAGGGAAAGAGCGGATGGCTGGTTAGAGATTGAACTGGGTGAATTCTCTTATGAAAGAGATGAGGAGTTGCTGAAGATGTCTTGTAAGGAGAATAGTTGTGGTGGCTTCAAGGGTGGTCTCATTGTTCAAGGGATTGAGATCAGACCCCATTTTGGAGAAAGGCCGGATCCAAGGCAAAAATGGCAGTCTTTTTGGGCCAGAATATGGAACAGGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

137

Amino Acids

15.92

Weight (kDa)

5.84

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 19 - 114 7e-16 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 399
AccBSI CCGCTC 1 cut(s) 206
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 356, 369
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 347, 399
AgsI TTSAA 4 cut(s) 61, 227, 304, 323
AluBI AGCT 3 cut(s) 8, 97, 185
AluI AGCT 3 cut(s) 8, 97, 185
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 356, 369
AoxI GGCC 3 cut(s) 356, 390, 408
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 109, 390, 408
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 109
BamHI GGATCC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 109, 390, 408
BmiI GGNNCC 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 145, 150
BmuI ACTGGG 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BsaBI GATNNNNATC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 194, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 399
Bse1I ACTGG 2 cut(s) 137, 234
Bse8I GATNNNNATC 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 194, 365
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 2 cut(s) 347, 399
BseNI ACTGG 2 cut(s) 137, 234
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 3 cut(s) 358, 392, 410
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 347, 399
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 2 cut(s) 156, 163
BsnI GGCC 3 cut(s) 358, 392, 410
Bso31I GGTCTC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 333, 361
BspACI CCGC 1 cut(s) 206
BspANI GGCC 3 cut(s) 358, 392, 410
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 2 cut(s) 356, 369
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 206
BsrI ACTGG 2 cut(s) 137, 234
BssECI CCNNGG 2 cut(s) 194, 365
BssMI GATC 2 cut(s) 333, 361
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 336, 364
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 333, 361
BstMWI GCNNNNNNNGC 2 cut(s) 160, 376
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 3 cut(s) 358, 392, 410
BtgZI GCGATG 2 cut(s) 122, 144
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 109, 390, 408
Csp6I GTAC 1 cut(s) 130
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviJI RGCY 9 cut(s) 8, 86, 97, 185, 213, 300, 358, 392, 410
CviKI_1 RGCY 9 cut(s) 8, 86, 97, 185, 213, 300, 358, 392, 410
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 335, 363
DpnII GATC 2 cut(s) 333, 361
Eco130I CCWWGG 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 365
FaiI YATR 4 cut(s) 156, 190, 246, 400
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 3 cut(s) 358, 392, 410
HapII CCGG 1 cut(s) 359
HinfI GANTC 2 cut(s) 35, 61
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 195, 338
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 376
HpyF3I CTNAG 1 cut(s) 145
Kzo9I GATC 2 cut(s) 333, 361
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 118, 199, 215, 372, 391, 406
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 145, 150
MaeI CTAG 1 cut(s) 42
MalI GATC 2 cut(s) 335, 363
MbiI CCGCTC 1 cut(s) 206
MboI GATC 2 cut(s) 333, 361
MboII GAAGA 1 cut(s) 280
MflI RGATCY 1 cut(s) 361
MluCI AATT 3 cut(s) 55, 174, 236
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 38, 189, 250
Mph1103I ATGCAT 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 359
Mva1269I GAATGC 2 cut(s) 156, 163
MwoI GCNNNNNNNGC 2 cut(s) 160, 376
NdeII GATC 2 cut(s) 333, 361
NlaIV GGNNCC 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 156
PctI GAATGC 2 cut(s) 156, 163
PfeI GAWTC 2 cut(s) 35, 61
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 3 cut(s) 109, 390, 408
PsuI RGATCY 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 333, 361
Sau96I GGNCC 3 cut(s) 109, 390, 408
SetI ASST 4 cut(s) 10, 23, 99, 187
SfaNI GCATC 2 cut(s) 145, 150
SinI GGWCC 1 cut(s) 109
Sse9I AATT 3 cut(s) 55, 174, 236
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 73
TaqII GACCGA 1 cut(s) 126
TasI AATT 3 cut(s) 55, 174, 236
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 2 cut(s) 35, 61
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 195, 261
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.