Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

75886904 .. 75891007

Gene Structure 4104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATTTCTCTGCCCGACTCCAGAGCAAAAAAGAGATTGTACTGGCATCGCATCCCCAAGAAATTGATGAAGCTCCATATCCGAGGGAAAGAGCGGATGGCTGGTTAGAGATTGAACTGGGTGAATTCTCTAATGAAAGGGATGAGGAGTTGCTGAAGATGCTTGTAAGGAGAATCGTTGTGGTGGCTTCAAGGGTGGTCTCATTGTTCAAGGGATTGAGATCAGACCCTATTTTGGACAAAGGCCGGATCCAAGGCAAAAATGGCAGCATCGAGCCCTCAACCGGAATTGTTCCTTCCTTGGCTTTCAATCGCTCTACGAAGTCGGAAAAGCCTACTACATCTACTACATCCACAATTGCACACTTGGCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

6.75

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	244, 257
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	235, 284
AgsI	TTSAA	4 cut(s)	116, 192, 211, 310
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	244, 257
AoxI	GGCC	2 cut(s)	244, 369
ApeKI	GCWGC	1 cut(s)	267
ApoI	RAATTY	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	4 cut(s)	56, 61, 150, 279
BmuI	ACTGGG	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	83, 253, 300
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 284
Bse1I	ACTGG	2 cut(s)	48, 123
Bse8I	GATNNNNATC	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	83, 253, 300
BseGI	GGATG	4 cut(s)	52, 103, 148, 350
BseJI	GATNNNNATC	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	235, 284
BseNI	ACTGG	2 cut(s)	48, 123
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	279
BshFI	GGCC	2 cut(s)	246, 371
BsiSI	CCGG	2 cut(s)	247, 285
BslI	CCNNNNNNNGG	2 cut(s)	235, 284
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	246, 371
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	221, 249
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	246, 371
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	2 cut(s)	244, 257
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	48, 123
BssECI	CCNNGG	3 cut(s)	83, 253, 300
BssMI	GATC	2 cut(s)	221, 249
BssT1I	CCWWGG	2 cut(s)	253, 300
BstF5I	GGATG	4 cut(s)	52, 103, 148, 350
BstKTI	GATC	2 cut(s)	224, 252
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	221, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 264, 368
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	246, 371
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	52, 103, 148, 350
Csp6I	GTAC	1 cut(s)	41
CviJI	RGCY	8 cut(s)	74, 102, 188, 246, 277, 305, 334, 371
CviKI_1	RGCY	8 cut(s)	74, 102, 188, 246, 277, 305, 334, 371
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	2 cut(s)	223, 251
DpnII	GATC	2 cut(s)	221, 249
Eco130I	CCWWGG	2 cut(s)	253, 300
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	253, 300
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	253, 300
FaiI	YATR	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	4 cut(s)	39, 110, 155, 337
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	246, 371
HapII	CCGG	2 cut(s)	247, 285
HinfI	GANTC	2 cut(s)	18, 174
HpaII	CCGG	2 cut(s)	247, 285
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	84, 226, 328
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 264, 368
Kzo9I	GATC	2 cut(s)	221, 249
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	29, 35, 88, 104, 260, 298
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	4 cut(s)	56, 61, 150, 279
MalI	GATC	2 cut(s)	223, 251
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	2 cut(s)	221, 249
MboII	GAAGA	1 cut(s)	169
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	4 cut(s)	63, 125, 288, 357
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	3 cut(s)	78, 139, 289
MspI	CCGG	2 cut(s)	247, 285
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	160, 264, 368
NdeII	GATC	2 cut(s)	221, 249
NlaIV	GGNNCC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	269
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	221, 249
SchI	GAGTC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	1 cut(s)	76
SfaNI	GCATC	4 cut(s)	56, 61, 150, 279
Sse9I	AATT	4 cut(s)	63, 125, 288, 357
SsiI	CCGC	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	253, 300
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	63, 125, 288, 357
TatI	WGTACW	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	267
TspDTI	ATGAA	2 cut(s)	84, 150
XapI	RAATTY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.