Rw7G007170

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003685
Physical Location & Seq
Forward (+)
6216681 .. 6217271
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007170.1

Sequence Viewer

Length: 591 bp
ATGATATCTGCAAGGGCCCTTTATATTATTTGGGCAGAAGAGAAATCTAATCAATACTGGACATGGATTTGTCTGCCTGAGTCCAGGTTTAAGGACGTGGTTTATCTAGAGAGTGTTTGTTGGATCGAAATCCATGAGAGAATTGATATGAGGATGCTGTCTTCATCCACTCTATATAAAGCTTACCTTGTGTACAAGCTAACTGCAGAGGCATATGGATTAAAAGCTCCTGTACAAGTCGCAACTCAAGTAGGGCATTATGGATTAGGTTACGGGGATCTGGCCATTGAAATATATGAGAATAGGCAGAAAGGGTTTCTTTATCCTGCTAAACAAGTCAGTGGAGTTCGATCTCCAAAGGAAAGAGTGGACGGTTGGTTGGAGATAGAGCTGGGTGAGTTTTTATGCCAAGGAGAAGATGATTCGCAGGTGGACATGATATGTGTAGAAATTGACGATCTGTGTTGGAAGAAGGGTCTAGTTGTGGAAGGAATAGAGGTCAGGCCAGAAAGAAAGGAATACTGCGAGGGCAAAGGCAAGGCAAGGGCGAAAGAGCGAGCCAAAGGCAAGAGAGCAATGACCATGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

196

Amino Acids

22.61

Weight (kDa)

5.86

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 1 - 169 1.4e-42 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 418
Acc36I ACCTGC 1 cut(s) 418
AclWI GGATC 2 cut(s) 131, 285
AcoI YGGCCR 1 cut(s) 282
AfaI GTAC 2 cut(s) 194, 234
AgsI TTSAA 1 cut(s) 290
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 4 cut(s) 182, 199, 227, 391
AluI AGCT 4 cut(s) 182, 199, 227, 391
AlwI GGATC 2 cut(s) 131, 285
AoxI GGCC 3 cut(s) 15, 282, 503
ApaI GGGCCC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 15, 16
AsuHPI GGTGA 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 19
BalI TGGCCA 1 cut(s) 284
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 85
BfaI CTAG 2 cut(s) 107, 479
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 15, 16
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 159, 164
BseJI GATNNNNATC 1 cut(s) 128
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 391
BshFI GGCC 3 cut(s) 17, 284, 505
BsnI GGCC 3 cut(s) 17, 284, 505
Bsp120I GGGCCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 19
Bsp1407I TGTACA 2 cut(s) 192, 232
Bsp143I GATC 5 cut(s) 123, 277, 350, 457, 585
BspANI GGCC 3 cut(s) 17, 284, 505
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 2 cut(s) 131, 285
BsrDI GCAATG 1 cut(s) 582
BsrGI TGTACA 2 cut(s) 192, 232
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 5 cut(s) 123, 277, 350, 457, 585
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 2 cut(s) 192, 232
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 159, 164
BstKTI GATC 5 cut(s) 126, 280, 353, 460, 588
BstMBI GATC 5 cut(s) 123, 277, 350, 457, 585
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 3 cut(s) 17, 284, 505
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 159, 164
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 15, 16
Csp6I GTAC 2 cut(s) 193, 233
CviAII CATG 4 cut(s) 63, 134, 436, 583
CviJI RGCY 8 cut(s) 17, 182, 199, 227, 284, 391, 505, 560
CviKI_1 RGCY 8 cut(s) 17, 182, 199, 227, 284, 391, 505, 560
CviQI GTAC 2 cut(s) 193, 233
DdeI CTNAG 1 cut(s) 78
DpnI GATC 5 cut(s) 125, 279, 352, 459, 587
DpnII GATC 5 cut(s) 123, 277, 350, 457, 585
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 6
EcoO109I RGGNCCY 2 cut(s) 15, 16
EcoRII CCWGG 1 cut(s) 83
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 4 cut(s) 66, 137, 439, 586
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 303, 335
FatI CATG 4 cut(s) 62, 133, 435, 582
FauNDI CATATG 1 cut(s) 214
FokI GGATG 2 cut(s) 151, 166
FriOI GRGCYC 1 cut(s) 19
FspBI CTAG 2 cut(s) 107, 479
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 3 cut(s) 17, 284, 505
Hin1II CATG 4 cut(s) 66, 137, 439, 586
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 80, 422
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 3 cut(s) 193, 370, 433
Hpy188I TCNGA 1 cut(s) 590
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 3 cut(s) 193, 370, 433
HpyAV CCTTC 2 cut(s) 466, 482
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 11, 206
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 4 cut(s) 66, 137, 439, 586
Kzo9I GATC 5 cut(s) 123, 277, 350, 457, 585
LmnI GCTCC 1 cut(s) 232
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 107, 479
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 269
MalI GATC 5 cut(s) 125, 279, 352, 459, 587
MboI GATC 5 cut(s) 123, 277, 350, 457, 585
MboII GAAGA 4 cut(s) 50, 153, 428, 481
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 2 cut(s) 141, 450
MluNI TGGCCA 1 cut(s) 284
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 3 cut(s) 101, 360, 446
MnlI CCTC 4 cut(s) 144, 202, 490, 520
Mox20I TGGCCA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 284
MseI TTAA 2 cut(s) 90, 221
Msp20I TGGCCA 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 214
NdeII GATC 5 cut(s) 123, 277, 350, 457, 585
NlaIII CATG 4 cut(s) 66, 137, 439, 586
NlaIV GGNNCC 1 cut(s) 17
PaqCI CACCTGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 422
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 17
PspOMI GGGCCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 15, 16
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 194, 234
RsaNI GTAC 2 cut(s) 193, 233
SaqAI TTAA 2 cut(s) 90, 221
Sau3AI GATC 5 cut(s) 123, 277, 350, 457, 585
Sau96I GGNCC 2 cut(s) 15, 16
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 2 cut(s) 141, 450
SspMI CTAG 2 cut(s) 107, 479
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 126, 349
TasI AATT 2 cut(s) 141, 450
TatI WGTACW 2 cut(s) 192, 232
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 2 cut(s) 90, 221
Tru9I TTAA 2 cut(s) 90, 221
TscAI CASTG 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 106
XspI CTAG 2 cut(s) 107, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.