Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

17828 .. 19318

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

atgccgcctgatggggcgaattctactgctttaaactttgttggaggaataccttttcagttgctgtatgatgcagttaaaatagccattaggaagactagcaagtttaaaattcacctcatcaatctccaaacgatgctagacgatttacagtcagcacaatgggttatccaacggataggagattataatcttcaactgcgtctcccaaacgatgtaatcgaaaatcttcaaagaaaaatgaatgatggtagagagctcgtgaacacggtatcaaaacttagcaggtgggatatccgcatctggggcaattgctacaactgcataggagatgactatggcgaacagcttaatgaattgaacagtaatattagaagactgtttcaactactagagcttcagcaacagaggaatgtggccgagctcttagagttgggaagatccgccaatgacaaattagatgaaatcaaagacaaactagatagaatggaatcacgggatagaaggaaatcagaaatgattgctgagttgatggagaagctgccgcagcataatggaacgaatggtgtgcaacaagttgcattgtcatatggaggagaaggggcagctcctgctctaagagaagtattccagcagcttttcactgaagttataagattggaggtcaagaatctgatgtttaaaagcctcttccaaagattagaatccacgctatactgcttacaaccattggtagaagagatatcaaaatctacgagggtattgtatattcaaaggcaagaagtagaaaattttattagttgtatagtgaagggtgtagagctcctttgcgaatgctctaaggtttgcaagagggtcacccatagaaagaacgattacactgacaaaattcaaaatttggatgaatctcttcagacgctcttcattgaactgatacagcaggtgggaaggagtttgaaagaggccatggattcggcagatagtatagaggcggcgatcaaagaaattgaagggattagtggtgtggtacaaaagaatgatgttgtgagcaatgtgaaggaggggacattggtggattcggaaagggttatagaggaggcattgaagcctattgaagggagtgatgcggtacaagatcaaatgaaaactgatcaattgccgcatgaacatccttcacctgcagttggattggatgtacacaccttgaagaaaacaagtgatgatgtgaatgaggagacattgttggatttggcaagggttaaagacgaggtcatcaagcctattgatgacgggagtgatgtgttgaaaaatgaaactgaatgtgaaattgcagcagctgaaccaccatcttcatcgccagcagttggatcggcattcgaatccacaagcaatgcaacgggagggctcaaacgacttaaggaaaaggtaaaatccttaccttccttaacacaactgcaaattaaatttgtatactcgcatttatttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

496

Amino Acids

55.94

Weight (kDa)

5.14

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	189, 653
AarI	CACCTGC	3 cut(s)	276, 931, 1186
Acc36I	ACCTGC	3 cut(s)	276, 931, 1186
AccB7I	CCANNNNNTGG	1 cut(s)	1364
AccI	GTMKAC	1 cut(s)	1470
AciI	CCGC	7 cut(s)	5, 298, 444, 545, 992, 1127, 1160
AclWI	GGATC	2 cut(s)	435, 1375
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	6 cut(s)	19, 111, 790, 888, 895, 1463
AcuI	CTGAAG	3 cut(s)	383, 666, 896
AfaI	GTAC	3 cut(s)	1029, 1131, 1197
AfiI	CCNNNNNNNGG	5 cut(s)	11, 304, 1115, 1184, 1364
AflII	CTTAAG	1 cut(s)	1415
AluBI	AGCT	9 cut(s)	259, 349, 397, 424, 541, 608, 637, 823, 1337
AluI	AGCT	9 cut(s)	259, 349, 397, 424, 541, 608, 637, 823, 1337
Alw21I	GWGCWC	3 cut(s)	261, 426, 825
Alw26I	GTCTC	2 cut(s)	209, 1229
AlwI	GGATC	2 cut(s)	435, 1375
AlwNI	CAGNNNCTG	3 cut(s)	64, 611, 1337
AoxI	GGCC	2 cut(s)	417, 963
ApeKI	GCWGC	6 cut(s)	541, 547, 605, 634, 1331, 1334
ApoI	RAATTY	6 cut(s)	19, 111, 790, 888, 895, 1463
Asp700I	GAANNNNTTC	2 cut(s)	228, 909
AsuHPI	GGTGA	3 cut(s)	107, 850, 1167
AsuII	TTCGAA	1 cut(s)	1377
BanII	GRGCYC	4 cut(s)	261, 426, 825, 1407
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	101, 382
Bbv12I	GWGCWC	3 cut(s)	261, 426, 825
BbvI	GCAGC	6 cut(s)	528, 559, 617, 646, 1343, 1346
BccI	CCATC	4 cut(s)	5, 242, 526, 1354
BcgI	CGANNNNNNTGC	4 cut(s)	550, 584, 1350, 1384
BclI	TGATCA	1 cut(s)	1150
BcoDI	GTCTC	2 cut(s)	209, 1229
BfaI	CTAG	4 cut(s)	99, 140, 392, 479
BfmI	CTRYAG	1 cut(s)	1179
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	3 cut(s)	276, 931, 1186
BmsI	GCATC	4 cut(s)	61, 126, 309, 1114
BpiI	GAAGAC	2 cut(s)	101, 382
Bpu14I	TTCGAA	1 cut(s)	1377
BsaBI	GATNNNNATC	2 cut(s)	189, 703
BsaJI	CCNNGG	1 cut(s)	966
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 1226, 1256
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 304, 1115, 1184, 1364
Bse3DI	GCAATG	2 cut(s)	1057, 1396
Bse8I	GATNNNNATC	2 cut(s)	189, 703
BseDI	CCNNGG	1 cut(s)	966
BseGI	GGATG	3 cut(s)	907, 1168, 1198
BseJI	GATNNNNATC	2 cut(s)	189, 703
BseLI	CCNNNNNNNGG	5 cut(s)	11, 304, 1115, 1184, 1364
BseMI	GCAATG	2 cut(s)	1057, 1396
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	3 cut(s)	609, 1109, 1247
BseXI	GCAGC	6 cut(s)	528, 559, 617, 646, 1343, 1346
BshFI	GGCC	2 cut(s)	419, 965
BsiHKAI	GWGCWC	3 cut(s)	261, 426, 825
BslFI	GGGAC	1 cut(s)	1078
BslI	CCNNNNNNNGG	5 cut(s)	11, 304, 1115, 1184, 1364
BsmAI	GTCTC	2 cut(s)	209, 1229
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	1078
BsmI	GAATGC	2 cut(s)	839, 1373
BsnI	GGCC	2 cut(s)	419, 965
Bsp119I	TTCGAA	1 cut(s)	1377
Bsp1286I	GDGCHC	4 cut(s)	261, 426, 825, 1407
Bsp1407I	TGTACA	1 cut(s)	1195
Bsp143I	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	7 cut(s)	5, 298, 444, 545, 992, 1127, 1160
BspANI	GGCC	2 cut(s)	419, 965
BspCNI	CTCAG	1 cut(s)	517
BspMAI	CTGCAG	1 cut(s)	1183
BspMI	ACCTGC	3 cut(s)	276, 931, 1186
BspPI	GGATC	2 cut(s)	435, 1375
BspQI	GCTCTTC	1 cut(s)	926
BspT104I	TTCGAA	1 cut(s)	1377
BspTI	CTTAAG	1 cut(s)	1415
BsrDI	GCAATG	2 cut(s)	1057, 1396
BsrGI	TGTACA	1 cut(s)	1195
BssECI	CCNNGG	1 cut(s)	966
BssMI	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
BssNAI	GTATAC	1 cut(s)	1471
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	966
Bst1107I	GTATAC	1 cut(s)	1471
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	153, 271, 365, 381
Bst6I	CTCTTC	4 cut(s)	695, 732, 915, 926
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	1195
BstBI	TTCGAA	1 cut(s)	1377
BstC8I	GCNNGC	1 cut(s)	1359
BstDEI	CTNAG	5 cut(s)	281, 427, 525, 617, 840
BstDSI	CCRYGG	1 cut(s)	966
BstEII	GGTNACC	1 cut(s)	856
BstENI	CCTNNNNNAGG	1 cut(s)	1113
BstF5I	GGATG	3 cut(s)	907, 1168, 1198
BstKTI	GATC	5 cut(s)	443, 999, 1138, 1153, 1370
BstMAI	GTCTC	2 cut(s)	209, 1229
BstMBI	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
BstMWI	GCNNNNNNNGC	4 cut(s)	306, 321, 547, 611
BstPI	GGTNACC	1 cut(s)	856
BstSFI	CTRYAG	1 cut(s)	1179
BstV1I	GCAGC	6 cut(s)	528, 559, 617, 646, 1343, 1346
BstV2I	GAAGAC	2 cut(s)	101, 382
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZ17I	GTATAC	1 cut(s)	1471
BsuRI	GGCC	2 cut(s)	419, 965
BtgI	CCRYGG	1 cut(s)	966
BtgZI	GCGATG	1 cut(s)	1338
BtsCI	GGATG	3 cut(s)	907, 1168, 1198
BtsIMutI	CAGTG	2 cut(s)	642, 879
BveI	ACCTGC	3 cut(s)	276, 931, 1186
Cac8I	GCNNGC	1 cut(s)	1359
CaiI	CAGNNNCTG	3 cut(s)	64, 611, 1337
CseI	GACGC	2 cut(s)	191, 925
Csp6I	GTAC	3 cut(s)	1028, 1130, 1196
CviAII	CATG	2 cut(s)	967, 1163
CviQI	GTAC	3 cut(s)	1028, 1130, 1196
DdeI	CTNAG	5 cut(s)	281, 427, 525, 617, 840
DpnI	GATC	5 cut(s)	442, 998, 1137, 1152, 1369
DpnII	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
DraI	TTTAAA	3 cut(s)	33, 109, 682
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	4 cut(s)	695, 732, 915, 926
EarI	CTCTTC	4 cut(s)	695, 732, 915, 926
EciI	GGCGGA	1 cut(s)	433
Ecl136II	GAGCTC	3 cut(s)	259, 424, 823
Eco130I	CCWWGG	1 cut(s)	966
Eco24I	GRGCYC	4 cut(s)	261, 426, 825, 1407
Eco32I	GATATC	2 cut(s)	295, 744
Eco53kI	GAGCTC	3 cut(s)	259, 424, 823
Eco57I	CTGAAG	3 cut(s)	383, 666, 896
Eco91I	GGTNACC	1 cut(s)	856
EcoICRI	GAGCTC	3 cut(s)	259, 424, 823
EcoNI	CCTNNNNNAGG	1 cut(s)	1113
EcoO65I	GGTNACC	1 cut(s)	856
EcoRI	GAATTC	1 cut(s)	19
EcoRV	GATATC	2 cut(s)	295, 744
EcoT14I	CCWWGG	1 cut(s)	966
EcoT38I	GRGCYC	4 cut(s)	261, 426, 825, 1407
ErhI	CCWWGG	1 cut(s)	966
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	970, 1166
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	2 cut(s)	966, 1162
FauNDI	CATATG	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	1150
FblI	GTMKAC	1 cut(s)	1470
FokI	GGATG	3 cut(s)	914, 1155, 1205
FriOI	GRGCYC	4 cut(s)	261, 426, 825, 1407
FspBI	CTAG	4 cut(s)	99, 140, 392, 479
HaeIII	GGCC	2 cut(s)	419, 965
HgaI	GACGC	2 cut(s)	191, 925
Hin1II	CATG	2 cut(s)	970, 1166
HinfI	GANTC	7 cut(s)	491, 670, 704, 905, 971, 1076, 1379
HphI	GGTGA	3 cut(s)	107, 850, 1167
Hpy166II	GTNNAC	3 cut(s)	265, 1198, 1471
Hpy188I	TCNGA	4 cut(s)	514, 675, 915, 1081
Hpy188III	TCNNGA	2 cut(s)	262, 667
Hpy8I	GTNNAC	3 cut(s)	265, 1198, 1471
HpyAV	CCTTC	9 cut(s)	498, 593, 805, 942, 1004, 1051, 1109, 1182, 1449
HpyCH4III	ACNGT	4 cut(s)	153, 271, 365, 381
HpyCH4V	TGCA	9 cut(s)	74, 324, 571, 581, 849, 1181, 1331, 1394, 1456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	306, 321, 547, 611
HpyF3I	CTNAG	5 cut(s)	281, 427, 525, 617, 840
Hsp92II	CATG	2 cut(s)	970, 1166
Ksp22I	TGATCA	1 cut(s)	1150
Kzo9I	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	2 cut(s)	613, 828
LpnPI	CCDG	8 cut(s)	21, 271, 289, 624, 644, 926, 1191, 1371
Lsp1109I	GCAGC	6 cut(s)	528, 559, 617, 646, 1343, 1346
LweI	GCATC	4 cut(s)	61, 126, 309, 1114
MaeI	CTAG	4 cut(s)	99, 140, 392, 479
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	5 cut(s)	442, 998, 1137, 1152, 1369
MboI	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
MfeI	CAATTG	2 cut(s)	310, 1154
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	4 cut(s)	261, 426, 825, 1407
MmeI	TCCRAC	5 cut(s)	22, 196, 1165, 1224, 1345
MroXI	GAANNNNTTC	2 cut(s)	228, 909
MseI	TTAA	9 cut(s)	32, 78, 108, 351, 681, 1260, 1416, 1445, 1461
MspA1I	CMGCKG	1 cut(s)	1337
MspCI	CTTAAG	1 cut(s)	1415
MunI	CAATTG	2 cut(s)	310, 1154
Mva1269I	GAATGC	2 cut(s)	839, 1373
MwoI	GCNNNNNNNGC	4 cut(s)	306, 321, 547, 611
NcoI	CCATGG	1 cut(s)	966
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
NlaIII	CATG	2 cut(s)	970, 1166
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	1377
PaqCI	CACCTGC	3 cut(s)	276, 931, 1186
PciSI	GCTCTTC	1 cut(s)	926
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	2 cut(s)	839, 1373
PdmI	GAANNNNTTC	2 cut(s)	228, 909
PfeI	GAWTC	7 cut(s)	491, 670, 704, 905, 971, 1076, 1379
PflFI	GACNNNGTC	1 cut(s)	1268
PflMI	CCANNNNNTGG	1 cut(s)	1364
PsiI	TTATAA	2 cut(s)	189, 653
Psp124BI	GAGCTC	3 cut(s)	261, 426, 825
PspEI	GGTNACC	1 cut(s)	856
PstI	CTGCAG	1 cut(s)	1183
PstNI	CAGNNNCTG	3 cut(s)	64, 611, 1337
PsuI	RGATCY	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	1268
PvuII	CAGCTG	1 cut(s)	1337
RsaI	GTAC	3 cut(s)	1029, 1131, 1197
RsaNI	GTAC	3 cut(s)	1028, 1130, 1196
SacI	GAGCTC	3 cut(s)	261, 426, 825
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	9 cut(s)	32, 78, 108, 351, 681, 1260, 1416, 1445, 1461
Sau3AI	GATC	5 cut(s)	440, 996, 1135, 1150, 1367
SduI	GDGCHC	4 cut(s)	261, 426, 825, 1407
SfaNI	GCATC	4 cut(s)	61, 126, 309, 1114
SfcI	CTRYAG	1 cut(s)	1179
SfuI	TTCGAA	1 cut(s)	1377
SmlI	CTYRAG	1 cut(s)	1415
SmoI	CTYRAG	1 cut(s)	1415
SsiI	CCGC	7 cut(s)	5, 298, 444, 545, 992, 1127, 1160
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	4 cut(s)	99, 140, 392, 479
SstI	GAGCTC	3 cut(s)	261, 426, 825
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	4 cut(s)	153, 271, 365, 381
TaqI	TCGA	2 cut(s)	222, 1377
TatI	WGTACW	1 cut(s)	1195
TauI	GCSGC	4 cut(s)	7, 547, 995, 1162
TfiI	GAWTC	7 cut(s)	491, 670, 704, 905, 971, 1076, 1379
Tru1I	TTAA	9 cut(s)	32, 78, 108, 351, 681, 1260, 1416, 1445, 1461
Tru9I	TTAA	9 cut(s)	32, 78, 108, 351, 681, 1260, 1416, 1445, 1461
TscAI	CASTG	2 cut(s)	649, 886
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	6 cut(s)	541, 547, 605, 634, 1331, 1334
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	9 cut(s)	257, 369, 477, 913, 918, 1157, 1179, 1326, 1341
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	649, 886
Tth111I	GACNNNGTC	1 cut(s)	1268
Van91I	CCANNNNNTGG	1 cut(s)	1364
Vha464I	CTTAAG	1 cut(s)	1415
XagI	CCTNNNNNAGG	1 cut(s)	1113
XapI	RAATTY	6 cut(s)	19, 111, 790, 888, 895, 1463
XmiI	GTMKAC	1 cut(s)	1470
XmnI	GAANNNNTTC	2 cut(s)	228, 909
XspI	CTAG	4 cut(s)	99, 140, 392, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.