FvH4_5g11162

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003685
Physical Location & Seq
Reverse (-)
6299770 .. 6300572
803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11162.t1

Sequence Viewer

Length: 603 bp
ATGCCTGCAGACTGTCATTGGTCTCTACGCGTTTCAAGTGCGCTGCAGAATCCGATCAAGTTTGGGAAAAAATTCCTTCCCAGTCCGCATCTTATCCATGCGATCGAATCCCAATCCACGTCTTCATCTACATTTGTGCCTGCCAAGTCCAAGAAGGAGTTTTACCTTGCGCTGTGCGATAACTCAGTCCTCATGGATAAATGGAAGATGAGCTTTTCACTGGACAAATGGAGTGGGAAAAAATGTTACATGATATGTGCAAGGGAACTTTTTATTGTTTGGGCACAAGATAAATCTAGATACTGGAGTTGGATATCTGTGGCTGAGTCCAGGTTTAAGGAGGTGGCTTCTCTAGACGAGGTTTGTTGGCTCGAAATACGTGGGAAAATCGATATGAGTATTCTGTCTCCATGGACTCTCTACAAAGCTTATCTTGTGTATAAGTTAACAAAAAGGCATTATGGATTCAATGTGCCTGTGGAGGTCGCAATTGCTGAAAGGCATTATGGATTTGAATACGGACCTCTGGATGCCGCACTTGGTGATTGTTTTGGCCACGCGTCTCAGCAGGGGCAGAGAGACGGTAGCAGTCAATGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

201

Amino Acids

22.96

Weight (kDa)

8.77

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 80 - 165 4.1e-31 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 30, 560
AciI CCGC 2 cut(s) 86, 534
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 542
AflIII ACRYGT 2 cut(s) 28, 558
AgsI TTSAA 3 cut(s) 36, 469, 515
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 2 cut(s) 213, 428
AluI AGCT 2 cut(s) 213, 428
Alw26I GTCTC 4 cut(s) 27, 411, 567, 573
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 43, 172
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 286
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BalI TGGCCA 1 cut(s) 555
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 331
BcoDI GTCTC 4 cut(s) 27, 411, 567, 573
BfaI CTAG 2 cut(s) 297, 353
BfmI CTRYAG 2 cut(s) 6, 44
BisI GCNGC 2 cut(s) 44, 534
BlsI GCNGC 2 cut(s) 45, 535
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 97, 520
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 410
Bse1I ACTGG 3 cut(s) 81, 225, 308
BseBI CCWGG 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 535
BseMII CTCAG 3 cut(s) 198, 315, 578
BseNI ACTGG 3 cut(s) 81, 225, 308
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 1 cut(s) 30
Bsh1236I CGCG 2 cut(s) 30, 560
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 555
BshVI ATCGAT 1 cut(s) 390
BsiEI CGRYCG 1 cut(s) 105
BsmAI GTCTC 4 cut(s) 27, 411, 567, 573
BsmBI CGTCTC 2 cut(s) 567, 573
BsnI GGCC 1 cut(s) 555
Bso31I GGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 54, 102
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 2 cut(s) 86, 534
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 3 cut(s) 197, 316, 577
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 2 cut(s) 30, 560
BspMAI CTGCAG 2 cut(s) 10, 48
BspTNI GGTCTC 1 cut(s) 27
BsrI ACTGG 3 cut(s) 81, 225, 308
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 2 cut(s) 54, 102
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 14, 584
BstAPI GCANNNNNTGC 1 cut(s) 594
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 6, 141
BstDEI CTNAG 3 cut(s) 184, 324, 564
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 535
BstFNI CGCG 2 cut(s) 30, 560
BstHHI GCGC 2 cut(s) 43, 172
BstKTI GATC 2 cut(s) 57, 105
BstMAI GTCTC 4 cut(s) 27, 411, 567, 573
BstMBI GATC 2 cut(s) 54, 102
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 594
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 2 cut(s) 6, 44
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 2 cut(s) 30, 560
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 114
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 1 cut(s) 555
BsuTUI ATCGAT 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 6, 141
CfoI GCGC 2 cut(s) 43, 172
Cfr13I GGNCC 1 cut(s) 521
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 4 cut(s) 98, 193, 250, 411
CviJI RGCY 6 cut(s) 213, 323, 347, 370, 428, 555
CviKI_1 RGCY 6 cut(s) 213, 323, 347, 370, 428, 555
DdeI CTNAG 3 cut(s) 184, 324, 564
DpnI GATC 2 cut(s) 56, 104
DpnII GATC 2 cut(s) 54, 102
DraIII CACNNNGTG 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 329
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
Esp3I CGTCTC 2 cut(s) 567, 573
FaeI CATG 4 cut(s) 101, 196, 253, 414
FaiI YATR 9 cut(s) 99, 194, 251, 256, 395, 412, 441, 462, 507
FalI AAGNNNNNCTT 4 cut(s) 197, 229, 417, 449
FatI CATG 4 cut(s) 97, 192, 249, 410
Fnu4HI GCNGC 2 cut(s) 44, 534
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 44, 534
FspBI CTAG 2 cut(s) 297, 353
GlaI GCGC 2 cut(s) 42, 171
GluI GCNGC 2 cut(s) 44, 534
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 555
HgaI GACGC 1 cut(s) 549
HhaI GCGC 2 cut(s) 43, 172
Hin1II CATG 4 cut(s) 101, 196, 253, 414
Hin6I GCGC 2 cut(s) 41, 170
HinP1I GCGC 2 cut(s) 41, 170
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 5 cut(s) 49, 107, 326, 415, 465
HpaI GTTAAC 1 cut(s) 447
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 3 cut(s) 297, 353, 527
Hpy8I GTNNAC 1 cut(s) 447
HpyAV CCTTC 2 cut(s) 86, 148
HpyCH4III ACNGT 2 cut(s) 14, 584
HpyCH4IV ACGT 2 cut(s) 119, 379
HpyCH4V TGCA 3 cut(s) 8, 46, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 594
HpyF3I CTNAG 3 cut(s) 184, 324, 564
HpySE526I ACGT 2 cut(s) 119, 379
Hsp92II CATG 4 cut(s) 101, 196, 253, 414
HspAI GCGC 2 cut(s) 41, 170
KspAI GTTAAC 1 cut(s) 447
Kzo9I GATC 2 cut(s) 54, 102
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 2 cut(s) 97, 520
MaeI CTAG 2 cut(s) 297, 353
MaeII ACGT 2 cut(s) 119, 379
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 56, 104
MboI GATC 2 cut(s) 54, 102
MboII GAAGA 2 cut(s) 114, 217
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 2 cut(s) 71, 489
MluI ACGCGT 2 cut(s) 28, 558
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 2 cut(s) 335, 409
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 5 cut(s) 200, 334, 352, 475, 534
Mox20I TGGCCA 1 cut(s) 555
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 555
MseI TTAA 2 cut(s) 336, 446
Msp20I TGGCCA 1 cut(s) 555
MspR9I CCNGG 1 cut(s) 331
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 2 cut(s) 30, 560
MwoI GCNNNNNNNGC 1 cut(s) 594
NcoI CCATGG 1 cut(s) 410
NdeII GATC 2 cut(s) 54, 102
NlaIII CATG 4 cut(s) 101, 196, 253, 414
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 49, 107, 465
PkrI GCNGC 2 cut(s) 45, 535
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 2 cut(s) 334, 409
PpsI GAGTC 2 cut(s) 334, 409
Ppu21I YACGTR 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 2 cut(s) 10, 48
PvuI CGATCG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 336, 446
SatI GCNGC 2 cut(s) 44, 534
Sau3AI GATC 2 cut(s) 54, 102
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 2 cut(s) 335, 409
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 2 cut(s) 97, 520
SfcI CTRYAG 2 cut(s) 6, 44
SinI GGWCC 1 cut(s) 521
Sse9I AATT 2 cut(s) 71, 489
SsiI CCGC 2 cut(s) 86, 534
SspMI CTAG 2 cut(s) 297, 353
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 2 cut(s) 14, 584
TaiI ACGT 2 cut(s) 122, 382
TaqI TCGA 3 cut(s) 105, 372, 390
TasI AATT 2 cut(s) 71, 489
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 49, 107, 465
Tru1I TTAA 2 cut(s) 336, 446
Tru9I TTAA 2 cut(s) 336, 446
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 71
XbaI TCTAGA 2 cut(s) 296, 352
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 297, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.