Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00594

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

10697 .. 11944

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCCCAACTAGACTTGGAGGGTAAGAAAAATATCACCGATCTTTTAAGTTTGGAAATTGCCAACCAGAACAGACTAGATAAATTGGATAAGAACGTACAAATTCTTTTGGATAGACAGCAAAAAATGTATGATATGATGGAACAGAATAGAGCAATAGGGAGAGATACTGTATGGATTCATAGTGTTCAACAGGTTGCATCTTCTAGTGGAGGAGGAGCTACTCCTGCCCCATCTCTAGGTGTAGTATTCCAGCAACTGTTTGATGTAGTTATAAAAGTAAGCGTCAAGCATATGATGTTTAAACGCCTCCTCGAAAGATTCAAATCCACGCTGCACTGCTTACAACCACTGATAGAAGAGATAGCAAAAAACAACAGGATATTGCATCTTCCAAAGGAAGAAGTGAAAAATCTTACTACACAATTAAAGAATGGTGCAGAACTCGTTCACAAATGCTCCAAGGTTCGCAAGAGGGCCAACTACAAAAAGAACGAATACAGCACCAAAATTCTGAATTTGAACAACTTTCTTCAAAGGCTCTTCGTTCGAATGAAAGCGCAGGTGGAAAAGAATGTGAATGAGGCTTTGGATTCAGCAAACAAAATAGAGGCGGTGATCAAGAACATTGAAGCTGGCGGTGTAGTAAAAATTGATGATGTCGGAAGTAAGGGTCACAATCCAGTAGAACCTGGATCACCTACAGTTGGACGAGATGTACATCAATTCAACGTGCAGGGACCAAGGGATGTGATTAAGGAGACATTGGTGGATTCGGCAAGGATTCTTATAGATCAGAAGGGGGTGAAGCCTAATGAAGGGAGTGATGTGGTACAAAACCAAATAGAAACTGCAGTTGGATTGAATGTACTGAGTTTGCAAGAATCGACGGAGGTGGAGACATTGGATTCAACTGCCAGAAATATGGAGCTTGTTGATTCAACAAGGACTGTGAAGGGGTCATTGGAGTTTGCAAGGAATACAGACAAGATGGGAGTCAACAAGATTGAAGGAAGTGGTGAAAGTCCAATTAAAATTGCAGTAGCTTCTGAAACTGAACCTCCTTCCCTTACAGTTAGGGATGTGTCGAGGAATGTTAAAAAGGCGGGAGATCTCAAGCAAATTGAATGTGAAATTGCAACAGTTGAACCTCTTTGTTCATCGCCTGCAGTTAGGTTGACATTGGATTCGACAAGCAATGCAAAGGTGGGTCTCAAACAATCTGAAAAGGAAAAGGTAATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

415

Amino Acids

45.97

Weight (kDa)

8.91

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	79 - 194	9.2e-24	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AciI	CCGC	3 cut(s)	614, 639, 1106
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	3 cut(s)	102, 510, 517
AfaI	GTAC	4 cut(s)	99, 720, 834, 870
AfiI	CCNNNNNNNGG	3 cut(s)	239, 707, 818
AjnI	CCWGG	1 cut(s)	691
AjuI	GAANNNNNNNTTGG	6 cut(s)	572, 604, 840, 872, 947, 979
AluBI	AGCT	4 cut(s)	221, 635, 931, 1046
AluI	AGCT	4 cut(s)	221, 635, 931, 1046
Alw26I	GTCTC	3 cut(s)	755, 893, 1217
AlwI	GGATC	1 cut(s)	703
AlwNI	CAGNNNCTG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	3, 477
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	3 cut(s)	102, 510, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	1171, 1203
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	4, 477, 740
AsuHPI	GGTGA	5 cut(s)	28, 628, 690, 817, 1031
AsuII	TTCGAA	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	740
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	133, 241, 985
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	3 cut(s)	755, 893, 1217
BfaI	CTAG	4 cut(s)	11, 77, 207, 239
BfmI	CTRYAG	3 cut(s)	702, 852, 1167
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	1111
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	4, 477, 740
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	209, 397
Bpu14I	TTCGAA	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	1100
BsaBI	GATNNNNATC	2 cut(s)	325, 720
BsaI	GGTCTC	1 cut(s)	1217
BsaJI	CCNNGG	2 cut(s)	462, 743
BsaXI	ACNNNNNCTCC	4 cut(s)	443, 473, 1045, 1075
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 707, 818
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	1204
Bse8I	GATNNNNATC	2 cut(s)	325, 720
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	462, 743
BseGI	GGATG	2 cut(s)	754, 1087
BseJI	GATNNNNATC	2 cut(s)	325, 720
BseLI	CCNNNNNNNGG	3 cut(s)	239, 707, 818
BseMI	GCAATG	1 cut(s)	1204
BseMII	CTCAG	1 cut(s)	863
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	3 cut(s)	228, 231, 302
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	3 cut(s)	320, 459, 755
BshFI	GGCC	2 cut(s)	5, 479
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	3 cut(s)	239, 707, 818
BsmAI	GTCTC	3 cut(s)	755, 893, 1217
BsmFI	GGGAC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	5, 479
Bso31I	GGTCTC	1 cut(s)	1217
Bsp119I	TTCGAA	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	5 cut(s)	40, 618, 695, 793, 1111
BspACI	CCGC	3 cut(s)	614, 639, 1106
BspANI	GGCC	2 cut(s)	5, 479
BspCNI	CTCAG	1 cut(s)	864
BspLI	GGNNCC	1 cut(s)	741
BspMAI	CTGCAG	2 cut(s)	856, 1171
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	548
BspT104I	TTCGAA	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	1217
BsrDI	GCAATG	1 cut(s)	1204
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	2 cut(s)	462, 743
BssMI	GATC	5 cut(s)	40, 618, 695, 793, 1111
BssT1I	CCWWGG	2 cut(s)	462, 743
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	6 cut(s)	172, 261, 706, 952, 1075, 1144
Bst6I	CTCTTC	2 cut(s)	354, 548
BstAUI	TGTACA	1 cut(s)	718
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	637, 1167
BstDEI	CTNAG	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	2 cut(s)	754, 1087
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	5 cut(s)	43, 621, 698, 796, 1114
BstMAI	GTCTC	3 cut(s)	755, 893, 1217
BstMBI	GATC	5 cut(s)	40, 618, 695, 793, 1111
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	693
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	3 cut(s)	702, 852, 1167
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	1111
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	1111
BsuRI	GGCC	2 cut(s)	5, 479
BtgZI	GCGATG	1 cut(s)	1146
BtsCI	GGATG	2 cut(s)	754, 1087
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	337, 350
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	637, 1167
CaiI	CAGNNNCTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	4, 477, 740
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	98, 719, 833, 869
CviJI	RGCY	9 cut(s)	5, 221, 479, 541, 587, 635, 811, 931, 1046
CviKI_1	RGCY	9 cut(s)	5, 221, 479, 541, 587, 635, 811, 931, 1046
CviQI	GTAC	4 cut(s)	98, 719, 833, 869
DdeI	CTNAG	1 cut(s)	872
DpnI	GATC	5 cut(s)	42, 620, 697, 795, 1113
DpnII	GATC	5 cut(s)	40, 618, 695, 793, 1111
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	354, 548
EarI	CTCTTC	2 cut(s)	354, 548
Eco130I	CCWWGG	2 cut(s)	462, 743
Eco31I	GGTCTC	1 cut(s)	1217
Eco47I	GGWCC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	462, 743
ErhI	CCWWGG	2 cut(s)	462, 743
FaiI	YATR	9 cut(s)	132, 137, 175, 183, 275, 294, 296, 791, 926
FaqI	GGGAC	1 cut(s)	753
FauI	CCCGC	1 cut(s)	1099
FauNDI	CATATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	2 cut(s)	761, 1094
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	4 cut(s)	11, 77, 207, 239
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	5, 479
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	562
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	2 cut(s)	1000, 1179
HindII	GTYRAC	2 cut(s)	1000, 1179
HphI	GGTGA	5 cut(s)	28, 628, 690, 817, 1031
Hpy166II	GTNNAC	3 cut(s)	451, 1000, 1179
Hpy188I	TCNGA	5 cut(s)	516, 665, 798, 1051, 1225
Hpy188III	TCNNGA	1 cut(s)	622
Hpy8I	GTNNAC	3 cut(s)	451, 1000, 1179
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	5 cut(s)	793, 812, 949, 1004, 1074
HpyCH4III	ACNGT	6 cut(s)	172, 261, 706, 952, 1075, 1144
HpyCH4IV	ACGT	2 cut(s)	96, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	872
HpySE526I	ACGT	2 cut(s)	96, 732
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	5 cut(s)	40, 618, 695, 793, 1111
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	218, 464, 928
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	2 cut(s)	209, 397
MaeI	CTAG	4 cut(s)	11, 77, 207, 239
MaeII	ACGT	2 cut(s)	96, 732
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	5 cut(s)	42, 620, 697, 795, 1113
MboI	GATC	5 cut(s)	40, 618, 695, 793, 1111
MboII	GAAGA	6 cut(s)	195, 371, 383, 413, 524, 535
MflI	RGATCY	1 cut(s)	1111
MlyI	GAGTC	1 cut(s)	1005
MmeI	TCCRAC	3 cut(s)	643, 688, 838
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1242
MspR9I	CCNGG	1 cut(s)	693
MssI	GTTTAAAC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	5 cut(s)	40, 618, 695, 793, 1111
NlaIV	GGNNCC	1 cut(s)	741
NmuCI	GTSAC	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	9 cut(s)	178, 321, 593, 773, 784, 884, 908, 938, 1187
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	1004
PmeI	GTTTAAAC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	1004
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	3 cut(s)	4, 477, 740
PstI	CTGCAG	2 cut(s)	856, 1171
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	1111
RsaI	GTAC	4 cut(s)	99, 720, 834, 870
RsaNI	GTAC	4 cut(s)	98, 719, 833, 869
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1242
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	5 cut(s)	40, 618, 695, 793, 1111
Sau96I	GGNCC	3 cut(s)	4, 477, 740
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	1 cut(s)	693
SfaNI	GCATC	2 cut(s)	209, 397
SfcI	CTRYAG	3 cut(s)	702, 852, 1167
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	1115
SmoI	CTYRAG	1 cut(s)	1115
SsiI	CCGC	3 cut(s)	614, 639, 1106
SspMI	CTAG	4 cut(s)	11, 77, 207, 239
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	2 cut(s)	462, 743
TaaI	ACNGT	6 cut(s)	172, 261, 706, 952, 1075, 1144
TaiI	ACGT	2 cut(s)	99, 735
TaqI	TCGA	5 cut(s)	315, 550, 887, 1088, 1190
TatI	WGTACW	2 cut(s)	718, 868
TfiI	GAWTC	9 cut(s)	178, 321, 593, 773, 784, 884, 908, 938, 1187
Tru1I	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1242
Tru9I	TTAA	7 cut(s)	47, 303, 428, 756, 1032, 1098, 1242
TscAI	CASTG	2 cut(s)	344, 357
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	4 cut(s)	170, 569, 831, 1149
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	2 cut(s)	344, 357
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	816
XapI	RAATTY	3 cut(s)	102, 510, 517
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	4 cut(s)	11, 77, 207, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.