Rroxscaffold_6G00426770

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003685
Physical Location & Seq
Forward (+)
47447175 .. 47447822
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426770.1

Sequence Viewer

Length: 321 bp
ATGGATTTCTCTGCCCGAGTCCAGTTTAATGAACGCCCATGGACATTTGACAACCATCCCATGGCGGTGGCCGTTTCTGCAAGGTCTTATGGCTTTGATTACGAATGCCCGAGTTTGAGTGAAATGGTTGAAGGAGGAGAGCTTAAGTACACTGCCTTTCTGGAGCAGCCGGAAAGAGAAATTAGTGAAGAGACTCGACTTCCAGACAAAAGGGCGGATGGCTGGTTGGAGATGGAGGTAGGTGAGTATTTCTGTGAAGGTGAGGAAGATGTGGAGTTGGAGATGATTTGTTCTGAGATTAATAGTAGCGGCAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

106

Amino Acids

12.25

Weight (kDa)

4.18

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 24 - 102 7.5e-07 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 3 cut(s) 65, 215, 309
AcoI YGGCCR 1 cut(s) 69
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 185
Ama87I CYCGRG 2 cut(s) 15, 109
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 166
AseI ATTAAT 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 254, 272
AvaI CYCGRG 2 cut(s) 15, 109
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 63, 212, 226
BceAI ACGGC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 185
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 167, 310
BlsI GCNGC 2 cut(s) 168, 311
BmeT110I CYCGRG 2 cut(s) 15, 109
BpmI CTGGAG 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 38, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 38, 60
BseGI GGATG 2 cut(s) 55, 223
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 1 cut(s) 71
BsiHKCI CYCGRG 2 cut(s) 15, 109
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 2 cut(s) 15, 109
Bsp19I CCATGG 2 cut(s) 38, 60
BspACI CCGC 3 cut(s) 65, 215, 309
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 286
BspTI CTTAAG 1 cut(s) 143
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 38, 60
BssT1I CCWWGG 2 cut(s) 38, 60
Bst6I CTCTTC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 2 cut(s) 38, 60
BstF5I GGATG 2 cut(s) 55, 223
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 38, 60
BtsCI GGATG 2 cut(s) 55, 223
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 39, 61
CviJI RGCY 5 cut(s) 71, 93, 142, 169, 222
CviKI_1 RGCY 5 cut(s) 71, 93, 142, 169, 222
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 2 cut(s) 38, 60
Eco88I CYCGRG 2 cut(s) 15, 109
EcoT14I CCWWGG 2 cut(s) 38, 60
ErhI CCWWGG 2 cut(s) 38, 60
FaeI CATG 2 cut(s) 42, 64
FaiI YATR 3 cut(s) 40, 62, 90
FatI CATG 2 cut(s) 38, 60
Fnu4HI GCNGC 2 cut(s) 167, 310
FokI GGATG 2 cut(s) 42, 230
Fsp4HI GCNGC 2 cut(s) 167, 310
GluI GCNGC 2 cut(s) 167, 310
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 170
Hin1II CATG 2 cut(s) 42, 64
HinfI GANTC 2 cut(s) 18, 193
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 254, 272
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 161, 203
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 125, 251
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 42, 64
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 35, 146, 183, 208, 216
Lsp1109I GCAGC 1 cut(s) 178
MboII GAAGA 2 cut(s) 200, 278
MluCI AATT 1 cut(s) 180
MlyI GAGTC 2 cut(s) 27, 187
MmeI TCCRAC 2 cut(s) 207, 258
MnlI CCTC 3 cut(s) 128, 229, 256
MseI TTAA 4 cut(s) 27, 144, 300, 319
MslI CAYNNNNRTG 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 143
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 2 cut(s) 38, 60
NlaIII CATG 2 cut(s) 42, 64
PctI GAATGC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 2 cut(s) 168, 311
PleI GAGTC 2 cut(s) 26, 187
PpsI GAGTC 2 cut(s) 26, 187
PshBI ATTAAT 1 cut(s) 300
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 4 cut(s) 27, 144, 300, 319
SatI GCNGC 2 cut(s) 167, 310
SchI GAGTC 2 cut(s) 27, 187
SetI ASST 5 cut(s) 86, 144, 240, 244, 262
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 180
SsiI CCGC 3 cut(s) 65, 215, 309
StyI CCWWGG 2 cut(s) 38, 60
TaqI TCGA 1 cut(s) 196
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 312
Tru1I TTAA 4 cut(s) 27, 144, 300, 319
Tru9I TTAA 4 cut(s) 27, 144, 300, 319
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 61
Vha464I CTTAAG 1 cut(s) 143
VspI ATTAAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.