Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003685

Physical Location & Seq

Genomic Coordinates Reverse (-)

61136941 .. 61139807

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGGCGTCTGTTGTTATAAACTTTGTTGGAGGAATACCTTTTCAATTGCTGTATGATGGTGTTAAAATGGCCATTAGGAAGACTGAGAAGTTTAAATCTCACCTCATGAAACTCCAATTCACGCTAGACTGTTTACGATCACAATCACGGCTTATCCAACGAATAGGAGAGAATAATGTTCAACTGAATCTCCCAAACAATGTAATCGAAAATCTTCAAACAAAAATGAACGAGGGTATAGAGCTAGTGGGCATGTTATCAAACCTTAGCCTCTGGAACATCCGCGTCTGGGGCAATTGCTGCAACTGCATAGAAAATAACTGCGGCGAACAACTTGATGAATTGGAGACGTCTCTTAGAGGTCTGTTAGAACTACTACAACTTGAGCAATATCGGGATGTGAAAGAGCTCTTAGTCTTGGCAAGACACATCAAAGACAAACAAGATGAAATGGATAGCAGGCAAGCAGAAGGTTTTAGACAGCAGCAAGAAATGTTTGCAATGATGAGGGAGCAGCATAACGCACCTGGGAGAATTGCAACGTATAGTGTGCAACAAGTTGCATTGTCAAATGGAGGAGAAATGGCAGCTCCTGCTCTAGGACAAGTATTCCAGCTGCTTTTCAGTGCTGTTATACAATTGGAGGTCAAGAATATGATGTTTAAACGCCTCTTCCAAAGATTGAAATCCACACTAAACTGCTTACAACCAATGGTAAAAGAGATATCAAAATCTACGAAGGTATTGTATCTTCCAAACCAGGAAGTAGAAAATTTTATTATTTGTATGGAGAAAGGGGTAGAGCTCGTTCACGAATGCTCAAAGGTTTGCAAGAGGCTCACCTACAAAAAGTACGATAACACTAACAAACTTCTAAATTTGGATGAGTCGCTTCAGACACTCTTCATTGAACTGAAACGGCAGGTGGGAAGGAGTTTGAAAGAGGCCATGGATTCGGCAAATAGTATAGAGGTGGCGATCAAAAAAATTGAAGGGATGAGTGGTGTGGTACAAAACAATGAAGTTTTGAGCGATGCGAAAGAGGAGACATTTGTGGATTCAGAAAGGGTTGTAGAGGAGGCAGTGAAGCCTATTGAATGGAGTGATGCGGTACAAGATCAAATGGAAACTGATCAACTGGAGCATGAACCTCCTTCACCTGCAGTTGGATTGGATGTATACACCGTGAAGAACACAAGTGATGATGTGAATGAGGAGACATTGTTGGATTTGGCATTTAAAGACGAGGTGATCAAGCCTATTGATGAAGGGAGTGATGCGTTAAAAAATCAAACTGAGTGTGAAATTGCAGCAGCTGAACCACCATCTTCGTCTCCAGCAGTTGGATCGGCATTGGAATCCACAAGCAATGCAAAGGCAGGGCCCAAACGATTTGAGGAAAAGGAAGCGGTGCTAGAACATCTGAAATGGAGCGCAAATGCCAGCATGACATCTTTTAAGAGAAGACACAATGAAACAGAAATCATCATGCAAGTGGCGTTTCCCGAAGAATGCGTAGCCAACATCATCTCCCTGACCACTCCTGCAGACGCATGCAGACTGTCCTCGATTTCTTGGAGTTTCCGGGACGCTGCAGAATCCGACAGAACTTGGGAAAATTTCCTTTCTCCTGATATCCACAAGATCCTATCCCAGTCCACGTCTTCATCTGCTACATCAGTTGACCCTGCCAAATCCAAATCCAAGAAGGAGTTTTACCTCAATCTCTGTGACAACCCAGTTCTCATCGACAATGGCAAGATGAGCTTTTCGCTGGACAAATGGAGTGGGAAGAAATGTTATATGATAAGTGCAAGGGCACTTCATGTTGTTTGGTCAGGAGAAAAAGATCCATACTGGAAATGGATTTCTGTGCCCGAGTCCAGGTTTGAGGAGGTGGCTTGTCTGAACAGTGTTTGTTGGCTTGAAATCCGTGGAAAAATTGATATGCGGATGATGTCTCCATCCACTCTTTATAAAGCATATATTGTGTATAAGCTAACTGCAGACGCATATGGATTTCGAGTACCTGTAGAGGTCGCAACTCGTGCAAGGGATTATGGATTTGAATACAAAGATCTTGATCATGACGGGTTTATAGAATACCCGGATAAGCAGAGAGGGTGTCTGGATCCTGATATACAAATTAATGGAACTCTATCTCCAAAGGAAAGAGTGGACGGCTGGTTGGAAATGGAGCTGGGTGAGTTTTTATGCCAAGGAGAAGGAGATGGGGAGTTGGAAATGATATGTGCGGAAATGAACGATCTGTGTTGGAAGAGTGGTCTTATTGTGCAAGGAATTGAGGTCAGGCCAGAAAGAAAGGAATATTGTGAGGCCAACGGTAAGGCAAGATCACATTTGCGAGACAAAGGCAAGAAAGCAATGACCATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

799

Amino Acids

90.54

Weight (kDa)

5.14

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	11 - 147	6e-10	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	196 - 327	2.2e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8
PP2	PF14299	598 - 772	5.2e-47	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16120 FvH4_5g11100 FvH4_5g11100 FvH4_5g11161 FvH4_5g11162 FvH4_5g11180 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210 FvH4_5g11210
rosa_chinensis	RchiOBHm_Chr7g0186641
rosa_laevigata	RLG00000004826 RLG00000017459
rosa_multiflora	Rmu_sc0000645.1_g000004 Rmu_sc0000645.1_g000008 Rmu_sc0007722.1_g000013 Rmu_sc0007722.1_g000014 Rmu_sc0019397.1_g000001 Rmu_sc0019398.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137900 Rroxscaffold_3G00267920 Rroxscaffold_3G00267960 Rroxscaffold_6G00426770
rosa_samantha	Rh2AG181600 Rh2BG191100 Rh2BG191200 Rh2DG187800 Rh7AG065100 Rh7DG083600
rosa_wichuraiana	Rw0G013220 Rw0G013230 Rw0G013260 Rw0G013270 Rw7G006950 Rw7G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	17, 1977
AarI	CACCTGC	2 cut(s)	913, 1168
AatII	GACGTC	1 cut(s)	353
Acc36I	ACCTGC	2 cut(s)	913, 1168
AccB7I	CCANNNNNTGG	1 cut(s)	1343
AccI	GTMKAC	1 cut(s)	1179
AccII	CGCG	1 cut(s)	285
AciI	CCGC	6 cut(s)	283, 324, 1109, 1409, 1951, 2255
AclWI	GGATC	5 cut(s)	1354, 1639, 1844, 2126, 2139
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	3 cut(s)	772, 877, 1618
AcuI	CTGAAG	1 cut(s)	878
AcyI	GRCGYC	2 cut(s)	5, 350
AfaI	GTAC	4 cut(s)	854, 1011, 1113, 2028
AfiI	CCNNNNNNNGG	5 cut(s)	289, 599, 1166, 1343, 1884
AjiI	CACGTC	1 cut(s)	1662
AjnI	CCWGG	3 cut(s)	526, 759, 1883
AloI	GAACNNNNNNTCC	2 cut(s)	2146, 2178
AluBI	AGCT	9 cut(s)	244, 409, 590, 616, 805, 1316, 1767, 1999, 2200
AluI	AGCT	9 cut(s)	244, 409, 590, 616, 805, 1316, 1767, 1999, 2200
Alw21I	GWGCWC	2 cut(s)	411, 807
Alw26I	GTCTC	7 cut(s)	341, 357, 1040, 1211, 1338, 1965, 2361
AlwI	GGATC	5 cut(s)	1354, 1639, 1844, 2126, 2139
AlwNI	CAGNNNCTG	2 cut(s)	593, 1316
Ama87I	CYCGRG	1 cut(s)	1877
AoxI	GGCC	5 cut(s)	69, 945, 1382, 2312, 2337
ApaI	GGGCCC	1 cut(s)	1386
ApeKI	GCWGC	8 cut(s)	300, 484, 514, 587, 616, 1310, 1313, 1592
ApoI	RAATTY	3 cut(s)	772, 877, 1618
AseI	ATTAAT	1 cut(s)	2148
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	1436
AspS9I	GGNCC	2 cut(s)	1382, 1383
AsuC2I	CCSGG	2 cut(s)	1586, 2108
AsuHPI	GGTGA	5 cut(s)	92, 832, 1149, 1261, 2216
AvaI	CYCGRG	1 cut(s)	1877
BaeGI	GKGCMC	3 cut(s)	1386, 1822, 1878
BalI	TGGCCA	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	2131
BanII	GRGCYC	3 cut(s)	411, 807, 1386
BarI	GAAGNNNNNNTAC	4 cut(s)	735, 767, 1700, 1732
BauI	CACGAG	1 cut(s)	2046
BbsI	GAAGAC	3 cut(s)	86, 1471, 1656
Bbv12I	GWGCWC	2 cut(s)	411, 807
BbvI	GCAGC	8 cut(s)	287, 496, 526, 599, 603, 1322, 1325, 1579
BccI	CCATC	4 cut(s)	50, 1333, 1972, 2225
BceAI	ACGGC	3 cut(s)	164, 935, 2197
BcgI	CGANNNNNNTGC	2 cut(s)	1329, 1363
BciT130I	CCWGG	3 cut(s)	528, 761, 1885
BclI	TGATCA	3 cut(s)	1132, 1251, 2083
BcnI	CCSGG	2 cut(s)	1586, 2108
BcoDI	GTCTC	7 cut(s)	341, 357, 1040, 1211, 1338, 1965, 2361
BfaI	CTAG	4 cut(s)	125, 245, 599, 1415
BfmI	CTRYAG	5 cut(s)	1161, 1545, 1593, 2004, 2031
BfuAI	ACCTGC	2 cut(s)	913, 1168
BglII	AGATCT	1 cut(s)	2077
BisI	GCNGC	9 cut(s)	301, 325, 485, 515, 588, 617, 1311, 1314, 1593
BlsI	GCNGC	9 cut(s)	302, 326, 486, 516, 589, 618, 1312, 1315, 1594
Bme1390I	CCNGG	5 cut(s)	528, 761, 1586, 1885, 2108
BmeT110I	CYCGRG	1 cut(s)	1877
BmgBI	CACGTC	1 cut(s)	1662
BmgT120I	GGNCC	2 cut(s)	1382, 1383
BmiI	GGNNCC	2 cut(s)	1384, 2133
BmrFI	CCNGG	5 cut(s)	528, 761, 1586, 1885, 2108
BmrI	ACTGGG	2 cut(s)	1648, 1733
BmsI	GCATC	3 cut(s)	1024, 1096, 1267
BmuI	ACTGGG	2 cut(s)	1648, 1733
BpiI	GAAGAC	3 cut(s)	86, 1471, 1656
BpmI	CTGGAG	2 cut(s)	1160, 1320
Bpu10I	CCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	1586, 2108
BsaBI	GATNNNNATC	3 cut(s)	142, 685, 2082
BsaHI	GRCGYC	2 cut(s)	5, 350
BsaJI	CCNNGG	4 cut(s)	527, 948, 1933, 2218
BsaXI	ACNNNNNCTCC	8 cut(s)	174, 204, 1208, 1238, 1514, 1544, 2146, 2176
Bsc4I	CCNNNNNNNGG	5 cut(s)	289, 599, 1166, 1343, 1884
Bse1I	ACTGG	4 cut(s)	1143, 1654, 1739, 1862
Bse3DI	GCAATG	3 cut(s)	507, 1375, 2391
Bse8I	GATNNNNATC	3 cut(s)	142, 685, 2082
BseBI	CCWGG	3 cut(s)	528, 761, 1885
BseDI	CCNNGG	4 cut(s)	527, 948, 1933, 2218
BseGI	GGATG	7 cut(s)	279, 403, 889, 1002, 1180, 1959, 1964
BseJI	GATNNNNATC	3 cut(s)	142, 685, 2082
BseLI	CCNNNNNNNGG	5 cut(s)	289, 599, 1166, 1343, 1884
BseMI	GCAATG	3 cut(s)	507, 1375, 2391
BseMII	CTCAG	2 cut(s)	75, 1287
BseNI	ACTGG	4 cut(s)	1143, 1654, 1739, 1862
BseRI	GAGGAG	5 cut(s)	591, 1058, 1091, 1229, 1907
BseSI	GKGCMC	3 cut(s)	1386, 1822, 1878
BseXI	GCAGC	8 cut(s)	287, 496, 526, 599, 603, 1322, 1325, 1579
BseYI	CCCAGC	1 cut(s)	2200
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	5 cut(s)	71, 947, 1384, 2314, 2339
BsiHKAI	GWGCWC	2 cut(s)	411, 807
BsiHKCI	CYCGRG	1 cut(s)	1877
BsiSI	CCGG	2 cut(s)	1585, 2108
BslFI	GGGAC	1 cut(s)	1601
BslI	CCNNNNNNNGG	5 cut(s)	289, 599, 1166, 1343, 1884
BsmAI	GTCTC	7 cut(s)	341, 357, 1040, 1211, 1338, 1965, 2361
BsmBI	CGTCTC	3 cut(s)	341, 357, 1338
BsmFI	GGGAC	1 cut(s)	1601
BsmI	GAATGC	2 cut(s)	821, 1517
BsnI	GGCC	5 cut(s)	71, 947, 1384, 2314, 2339
BsoBI	CYCGRG	1 cut(s)	1877
Bsp120I	GGGCCC	1 cut(s)	1382
Bsp1286I	GDGCHC	5 cut(s)	411, 807, 1386, 1822, 1878
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	6 cut(s)	283, 324, 1109, 1409, 1951, 2255
BspANI	GGCC	5 cut(s)	71, 947, 1384, 2314, 2339
BspCNI	CTCAG	2 cut(s)	76, 1288
BspFNI	CGCG	1 cut(s)	285
BspHI	TCATGA	2 cut(s)	105, 2086
BspLI	GGNNCC	2 cut(s)	1384, 2133
BspMAI	CTGCAG	4 cut(s)	1165, 1549, 1597, 2008
BspMI	ACCTGC	2 cut(s)	913, 1168
BspPI	GGATC	5 cut(s)	1354, 1639, 1844, 2126, 2139
BsrDI	GCAATG	3 cut(s)	507, 1375, 2391
BsrI	ACTGG	4 cut(s)	1143, 1654, 1739, 1862
BssECI	CCNNGG	4 cut(s)	527, 948, 1933, 2218
BssNAI	GTATAC	1 cut(s)	1180
BssNI	GRCGYC	2 cut(s)	5, 350
BssSI	CACGAG	1 cut(s)	2046
BssT1I	CCWWGG	2 cut(s)	948, 2218
Bst1107I	GTATAC	1 cut(s)	1180
Bst2BI	CACGAG	1 cut(s)	2046
Bst2UI	CCWGG	3 cut(s)	528, 761, 1885
Bst4CI	ACNGT	5 cut(s)	131, 1186, 1563, 1913, 2345
Bst6I	CTCTTC	3 cut(s)	677, 908, 2273
BstACI	GRCGYC	2 cut(s)	5, 350
BstAPI	GCANNNNNTGC	3 cut(s)	300, 593, 2048
BstC8I	GCNNGC	4 cut(s)	461, 465, 1444, 1555
BstDEI	CTNAG	5 cut(s)	84, 266, 356, 412, 1296
BstDSI	CCRYGG	2 cut(s)	948, 1933
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	7 cut(s)	279, 403, 889, 1002, 1180, 1959, 1964
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	1436
BstMAI	GTCTC	7 cut(s)	341, 357, 1040, 1211, 1338, 1965, 2361
BstMWI	GCNNNNNNNGC	6 cut(s)	291, 300, 306, 593, 1764, 2048
BstNI	CCWGG	3 cut(s)	528, 761, 1885
BstNSI	RCATGY	2 cut(s)	256, 1557
BstSCI	CCNGG	5 cut(s)	526, 759, 1584, 1883, 2106
BstSFI	CTRYAG	5 cut(s)	1161, 1545, 1593, 2004, 2031
BstSLI	GKGCMC	3 cut(s)	1386, 1822, 1878
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	8 cut(s)	287, 496, 526, 599, 603, 1322, 1325, 1579
BstV2I	GAAGAC	3 cut(s)	86, 1471, 1656
BstX2I	RGATCY	4 cut(s)	1644, 1849, 2077, 2131
BstYI	RGATCY	4 cut(s)	1644, 1849, 2077, 2131
BstZ17I	GTATAC	1 cut(s)	1180
BsuRI	GGCC	5 cut(s)	71, 947, 1384, 2314, 2339
BtgI	CCRYGG	2 cut(s)	948, 1933
BtgZI	GCGATG	1 cut(s)	1047
BtrI	CACGTC	1 cut(s)	1662
BtsCI	GGATG	7 cut(s)	279, 403, 889, 1002, 1180, 1959, 1964
BtsI	GCAGTG	1 cut(s)	1089
BtsIMutI	CAGTG	3 cut(s)	631, 1089, 1918
BveI	ACCTGC	2 cut(s)	913, 1168
Cac8I	GCNNGC	4 cut(s)	461, 465, 1444, 1555
CaiI	CAGNNNCTG	2 cut(s)	593, 1316
CciI	TCATGA	2 cut(s)	105, 2086
CfoI	GCGC	1 cut(s)	1436
Cfr13I	GGNCC	2 cut(s)	1382, 1383
CseI	GACGC	4 cut(s)	274, 1559, 1598, 2018
Csp6I	GTAC	4 cut(s)	853, 1010, 1112, 2027
CspCI	CAANNNNNGTGG	2 cut(s)	1768, 1803
CviQI	GTAC	4 cut(s)	853, 1010, 1112, 2027
DdeI	CTNAG	5 cut(s)	84, 266, 356, 412, 1296
DraI	TTTAAA	3 cut(s)	94, 664, 1240
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	3 cut(s)	677, 908, 2273
EarI	CTCTTC	3 cut(s)	677, 908, 2273
Ecl136II	GAGCTC	2 cut(s)	409, 805
Eco130I	CCWWGG	2 cut(s)	948, 2218
Eco24I	GRGCYC	3 cut(s)	411, 807, 1386
Eco32I	GATATC	2 cut(s)	726, 1636
Eco53kI	GAGCTC	2 cut(s)	409, 805
Eco57I	CTGAAG	1 cut(s)	878
Eco88I	CYCGRG	1 cut(s)	1877
EcoICRI	GAGCTC	2 cut(s)	409, 805
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	1382
EcoRII	CCWGG	3 cut(s)	526, 759, 1883
EcoRV	GATATC	2 cut(s)	726, 1636
EcoT14I	CCWWGG	2 cut(s)	948, 2218
EcoT38I	GRGCYC	3 cut(s)	411, 807, 1386
ErhI	CCWWGG	2 cut(s)	948, 2218
Esp3I	CGTCTC	3 cut(s)	341, 357, 1338
FalI	AAGNNNNNCTT	2 cut(s)	1751, 1783
FaqI	GGGAC	1 cut(s)	1601
FauNDI	CATATG	1 cut(s)	2014
FbaI	TGATCA	3 cut(s)	1132, 1251, 2083
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	9 cut(s)	301, 325, 485, 515, 588, 617, 1311, 1314, 1593
FokI	GGATG	7 cut(s)	266, 410, 896, 1009, 1187, 1951, 1966
FriOI	GRGCYC	3 cut(s)	411, 807, 1386
Fsp4HI	GCNGC	9 cut(s)	301, 325, 485, 515, 588, 617, 1311, 1314, 1593
FspBI	CTAG	4 cut(s)	125, 245, 599, 1415
GlaI	GCGC	1 cut(s)	1435
GluI	GCNGC	9 cut(s)	301, 325, 485, 515, 588, 617, 1311, 1314, 1593
GsaI	CCCAGC	1 cut(s)	2204
GsuI	CTGGAG	2 cut(s)	1160, 1320
HaeIII	GGCC	5 cut(s)	71, 947, 1384, 2314, 2339
HapII	CCGG	2 cut(s)	1585, 2108
HgaI	GACGC	4 cut(s)	274, 1559, 1598, 2018
HhaI	GCGC	1 cut(s)	1436
Hin1I	GRCGYC	2 cut(s)	5, 350
Hin6I	GCGC	1 cut(s)	1434
HinP1I	GCGC	1 cut(s)	1434
HincII	GTYRAC	1 cut(s)	1684
HindII	GTYRAC	1 cut(s)	1684
HinfI	GANTC	7 cut(s)	187, 887, 953, 1058, 1358, 1598, 1880
HpaII	CCGG	2 cut(s)	1585, 2108
HphI	GGTGA	5 cut(s)	92, 832, 1149, 1261, 2216
Hpy166II	GTNNAC	6 cut(s)	134, 811, 1180, 1659, 1684, 2179
Hpy188I	TCNGA	6 cut(s)	897, 1063, 1425, 1603, 1908, 2399
Hpy8I	GTNNAC	6 cut(s)	134, 811, 1180, 1659, 1684, 2179
HpyAV	CCTTC	8 cut(s)	464, 733, 924, 986, 1164, 1262, 1702, 2219
HpyCH4III	ACNGT	5 cut(s)	131, 1186, 1563, 1913, 2345
HpyCH4IV	ACGT	3 cut(s)	350, 542, 1661
HpyF10VI	GCNNNNNNNGC	6 cut(s)	291, 300, 306, 593, 1764, 2048
HpyF3I	CTNAG	5 cut(s)	84, 266, 356, 412, 1296
HpySE526I	ACGT	3 cut(s)	350, 542, 1661
Hsp92I	GRCGYC	2 cut(s)	5, 350
HspAI	GCGC	1 cut(s)	1434
Ksp22I	TGATCA	3 cut(s)	1132, 1251, 2083
LmnI	GCTCC	5 cut(s)	511, 595, 1141, 1431, 2197
Lsp1109I	GCAGC	8 cut(s)	287, 496, 526, 599, 603, 1322, 1325, 1579
LweI	GCATC	3 cut(s)	1024, 1096, 1267
MaeI	CTAG	4 cut(s)	125, 245, 599, 1415
MaeII	ACGT	3 cut(s)	350, 542, 1661
MaeIII	GTNAC	1 cut(s)	1730
MfeI	CAATTG	3 cut(s)	44, 295, 638
MflI	RGATCY	4 cut(s)	1644, 1849, 2077, 2131
MhlI	GDGCHC	5 cut(s)	411, 807, 1386, 1822, 1878
MlsI	TGGCCA	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	896, 1889
MmeI	TCCRAC	9 cut(s)	7, 181, 1147, 1206, 1324, 1626, 2169, 2220, 2255
Mox20I	TGGCCA	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	7 cut(s)	63, 93, 663, 1239, 1283, 1458, 2148
MslI	CAYNNNNRTG	1 cut(s)	1493
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	616, 1316
MspI	CCGG	2 cut(s)	1585, 2108
MspR9I	CCNGG	5 cut(s)	528, 761, 1586, 1885, 2108
MssI	GTTTAAAC	1 cut(s)	664
MunI	CAATTG	3 cut(s)	44, 295, 638
Mva1269I	GAATGC	2 cut(s)	821, 1517
MvaI	CCWGG	3 cut(s)	528, 761, 1885
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	6 cut(s)	291, 300, 306, 593, 1764, 2048
NciI	CCSGG	2 cut(s)	1586, 2108
NcoI	CCATGG	1 cut(s)	948
NdeI	CATATG	1 cut(s)	2014
NlaIV	GGNNCC	2 cut(s)	1384, 2133
NmuCI	GTSAC	1 cut(s)	1730
NspI	RCATGY	2 cut(s)	256, 1557
PaeI	GCATGC	1 cut(s)	1557
PagI	TCATGA	2 cut(s)	105, 2086
PaqCI	CACCTGC	2 cut(s)	913, 1168
PctI	GAATGC	2 cut(s)	821, 1517
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	5 cut(s)	187, 953, 1058, 1358, 1598
PflMI	CCANNNNNTGG	1 cut(s)	1343
PfoI	TCCNGGA	1 cut(s)	1584
PkrI	GCNGC	9 cut(s)	302, 326, 486, 516, 589, 618, 1312, 1315, 1594
PleI	GAGTC	2 cut(s)	895, 1888
PmeI	GTTTAAAC	1 cut(s)	664
PpsI	GAGTC	2 cut(s)	895, 1888
PshBI	ATTAAT	1 cut(s)	2148
PsiI	TTATAA	2 cut(s)	17, 1977
Psp124BI	GAGCTC	2 cut(s)	411, 807
Psp6I	CCWGG	3 cut(s)	526, 759, 1883
PspFI	CCCAGC	1 cut(s)	2200
PspGI	CCWGG	3 cut(s)	526, 759, 1883
PspN4I	GGNNCC	2 cut(s)	1384, 2133
PspOMI	GGGCCC	1 cut(s)	1382
PspPI	GGNCC	2 cut(s)	1382, 1383
PsrI	GAACNNNNNNTAC	2 cut(s)	792, 824
PstI	CTGCAG	4 cut(s)	1165, 1549, 1597, 2008
PstNI	CAGNNNCTG	2 cut(s)	593, 1316
PsuI	RGATCY	4 cut(s)	1644, 1849, 2077, 2131
PvuII	CAGCTG	2 cut(s)	616, 1316
RsaI	GTAC	4 cut(s)	854, 1011, 1113, 2028
RsaNI	GTAC	4 cut(s)	853, 1010, 1112, 2027
RseI	CAYNNNNRTG	1 cut(s)	1493
SacI	GAGCTC	2 cut(s)	411, 807
SaqAI	TTAA	7 cut(s)	63, 93, 663, 1239, 1283, 1458, 2148
SatI	GCNGC	9 cut(s)	301, 325, 485, 515, 588, 617, 1311, 1314, 1593
Sau96I	GGNCC	2 cut(s)	1382, 1383
SchI	GAGTC	2 cut(s)	896, 1889
ScrFI	CCNGG	5 cut(s)	528, 761, 1586, 1885, 2108
SduI	GDGCHC	5 cut(s)	411, 807, 1386, 1822, 1878
SfaNI	GCATC	3 cut(s)	1024, 1096, 1267
SfcI	CTRYAG	5 cut(s)	1161, 1545, 1593, 2004, 2031
SmiMI	CAYNNNNRTG	1 cut(s)	1493
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	1557
SsiI	CCGC	6 cut(s)	283, 324, 1109, 1409, 1951, 2255
SspI	AATATT	1 cut(s)	2330
SspMI	CTAG	4 cut(s)	125, 245, 599, 1415
SstI	GAGCTC	2 cut(s)	411, 807
StyD4I	CCNGG	5 cut(s)	526, 759, 1584, 1883, 2106
StyI	CCWWGG	2 cut(s)	948, 2218
TaaI	ACNGT	5 cut(s)	131, 1186, 1563, 1913, 2345
TaiI	ACGT	3 cut(s)	353, 545, 1664
TaqI	TCGA	4 cut(s)	207, 1568, 1749, 2023
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	5 cut(s)	187, 953, 1058, 1358, 1598
Tru1I	TTAA	7 cut(s)	63, 93, 663, 1239, 1283, 1458, 2148
Tru9I	TTAA	7 cut(s)	63, 93, 663, 1239, 1283, 1458, 2148
TscAI	CASTG	3 cut(s)	631, 1089, 1918
TseFI	GTSAC	1 cut(s)	1730
TseI	GCWGC	8 cut(s)	300, 484, 514, 587, 616, 1310, 1313, 1592
Tsp45I	GTSAC	1 cut(s)	1730
TspGWI	ACGGA	1 cut(s)	1922
TspRI	CASTG	3 cut(s)	631, 1089, 1918
Van91I	CCANNNNNTGG	1 cut(s)	1343
VspI	ATTAAT	1 cut(s)	2148
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	3 cut(s)	772, 877, 1618
XceI	RCATGY	2 cut(s)	256, 1557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1860
XmiI	GTMKAC	1 cut(s)	1179
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	4 cut(s)	125, 245, 599, 1415
ZraI	GACGTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.