Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Reverse (-)

10642382 .. 10643694

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATGACAGTATTGTATCTCCAGTTGTGGGCCTTCAGAGTTACAACGCTCAGAGTGAATGCTGGTTTCAGCTAAGGCCCTCAGCACCAGCACGGACAATAGTAACAAACTTAAACCCTTGTGGAGTACTGGAAAAGCGTTTGAGGACACTTGAGGAGACGGCATCTGTTATGGCAAGAGCTATTGTGAGCACAGGAGTTTTACAAAAGCTTAGATTAAGTGTTGTATACTATGTGAGGCCATCATATCGTGATACATTTGTTAGCATGTTCCTAGTTGTTGTCATACCAGAACTGGTTCTGGAGATACTGAACGACATTGTTGTCAACTTGGAAGGCCTTGGTGAGAACATCAAGCTTGATCGGAGGTTTGGAGCCGAAAACTGCGTTGGCTATGGTGATGACACCTGGGTTCTGGCTGCTAAGACCGGCAATGGCCATGGCTTTGACCTTTCCGATGTTGAACTGGAAGTGAATAAGACCAACCGGGAAGACAAACACATCTCCAGGGTACAACACTTTGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

177

Amino Acids

19.66

Weight (kDa)

5.27

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	2 cut(s)	129, 513
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	2 cut(s)	407, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	4 cut(s)	73, 182, 211, 358
AluI	AGCT	4 cut(s)	73, 182, 211, 358
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	152
AoxI	GGCC	5 cut(s)	31, 77, 239, 337, 436
ApeKI	GCWGC	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	31, 78
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	356, 410
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BalI	TGGCCA	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	409, 508
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	3 cut(s)	409, 488, 508
BmgT120I	GGNCC	2 cut(s)	31, 78
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	3 cut(s)	409, 488, 508
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	3 cut(s)	6, 323, 490
Bpu10I	CCTNAGC	2 cut(s)	74, 82
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	340, 408, 439, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	4 cut(s)	23, 135, 300, 471
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	409, 508
BseDI	CCNNGG	4 cut(s)	340, 408, 439, 507
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	65, 96
BseNI	ACTGG	4 cut(s)	23, 135, 300, 471
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	406
BshFI	GGCC	5 cut(s)	33, 79, 241, 339, 438
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	429, 487
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	5 cut(s)	33, 79, 241, 339, 438
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	361
Bsp19I	CCATGG	1 cut(s)	439
BspANI	GGCC	5 cut(s)	33, 79, 241, 339, 438
BspCNI	CTCAG	2 cut(s)	64, 95
BspLI	GGNNCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	4 cut(s)	23, 135, 300, 471
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	4 cut(s)	340, 408, 439, 507
BssMI	GATC	1 cut(s)	361
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	2 cut(s)	340, 439
Bst1107I	GTATAC	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	409, 508
Bst4CI	ACNGT	1 cut(s)	11
BstDEI	CTNAG	5 cut(s)	51, 74, 82, 212, 423
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	361
BstNI	CCWGG	2 cut(s)	409, 508
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	407, 486, 506
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	498
BstZ17I	GTATAC	1 cut(s)	229
BsuRI	GGCC	5 cut(s)	33, 79, 241, 339, 438
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	31, 78
Csp6I	GTAC	2 cut(s)	128, 512
CviAII	CATG	2 cut(s)	268, 440
CviQI	GTAC	2 cut(s)	128, 512
DdeI	CTNAG	5 cut(s)	51, 74, 82, 212, 423
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	340, 439
Eco147I	AGGCCT	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	407, 506
EcoT14I	CCWWGG	2 cut(s)	340, 439
ErhI	CCWWGG	2 cut(s)	340, 439
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	271, 443
FaiI	YATR	8 cut(s)	173, 229, 234, 247, 269, 287, 396, 441
FatI	CATG	2 cut(s)	267, 439
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	420
GsuI	CTGGAG	3 cut(s)	6, 323, 490
HaeIII	GGCC	5 cut(s)	33, 79, 241, 339, 438
HapII	CCGG	2 cut(s)	429, 487
Hin1II	CATG	2 cut(s)	271, 443
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	2 cut(s)	209, 356
HpaII	CCGG	2 cut(s)	429, 487
HphI	GGTGA	2 cut(s)	356, 410
Hpy166II	GTNNAC	2 cut(s)	229, 328
Hpy188I	TCNGA	4 cut(s)	39, 54, 366, 457
Hpy188III	TCNNGA	2 cut(s)	251, 302
Hpy8I	GTNNAC	2 cut(s)	229, 328
HpyAV	CCTTC	2 cut(s)	44, 329
HpyCH4III	ACNGT	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	51, 74, 82, 212, 423
Hsp92II	CATG	2 cut(s)	271, 443
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	41, 103
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	438
MluNI	TGGCCA	1 cut(s)	438
MnlI	CCTC	5 cut(s)	91, 138, 148, 231, 360
Mox20I	TGGCCA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	2 cut(s)	113, 218
MslI	CAYNNNNRTG	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	438
MspI	CCGG	2 cut(s)	429, 487
MspR9I	CCNGG	3 cut(s)	409, 488, 508
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	409, 508
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	439
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	271, 443
NlaIV	GGNNCC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	271
OliI	CACNNNNGTG	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	407, 506
PspGI	CCWGG	2 cut(s)	407, 506
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	31, 78
RsaI	GTAC	2 cut(s)	129, 513
RsaNI	GTAC	2 cut(s)	128, 512
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	113, 218
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	31, 78
ScaI	AGTACT	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	409, 488, 508
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	7 cut(s)	75, 184, 213, 360, 371, 410, 453
SfaNI	GCATC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	407, 486, 506
StyI	CCWWGG	2 cut(s)	340, 439
TaaI	ACNGT	1 cut(s)	11
TatI	WGTACW	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	113, 218
Tru9I	TTAA	2 cut(s)	113, 218
TseI	GCWGC	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	109
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.