RchiOBHm_Chr1g0318141

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002045
Physical Location & Seq
Forward (+)
5608447 .. 5617088
8642 bp
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UTR
Exon/CDS
Intron
PRQ54843

Sequence Viewer

Length: 390 bp
ATGAACAACCTCAACAAAGACGACCTCTATATGACAAGTAAGATAAAGGAGCTGGTTAGAGGTGATGGACATTCACATTCAAAAGTGTATGGCGATCCAACTACACTAGACTCTATAAATCTAAATGATCTACATCCCAGATCTTGGTATTCAGTGGCATGGTATCCTATTTACAGGATACCTGATGGCTTCCGTGCAGCATTTTTGACCTACCATTCACTTGGTTGTCTGGTTCGTAGAAATGCCATCTTTGAGTCTCGTAGTGTGGATGACTGTATTGTATCTCCAGTTGTGGGTCTTCAGAGTTACAATGCTCAGAGTGAATGCTGGTTCCAGTTTAAGGCCCTCAGCACCAGCACAGACAACATTATCAAACTTAAACCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

129

Amino Acids

14.75

Weight (kDa)

7.73

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 11 - 114 1.5e-29 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AclWI GGATC 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 144, 293, 340
AgsI TTSAA 1 cut(s) 81
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 59, 179, 254
BciVI GTATCC 2 cut(s) 171, 174
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 107
BfuI GTATCC 2 cut(s) 171, 174
BglII AGATCT 1 cut(s) 140
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 293, 340
Bse1I ACTGG 2 cut(s) 287, 334
Bse8I GATNNNNATC 1 cut(s) 132
BseGI GGATG 2 cut(s) 133, 274
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 144, 293, 340
BseMII CTCAG 2 cut(s) 329, 361
BseNI ACTGG 2 cut(s) 287, 334
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 144, 293, 340
BsmAI GTCTC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 3 cut(s) 94, 127, 140
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 328, 360
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 1 cut(s) 89
BsrI ACTGG 2 cut(s) 287, 334
BssMI GATC 3 cut(s) 94, 127, 140
Bst4CI ACNGT 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 315, 347
BstF5I GGATG 2 cut(s) 133, 274
BstKTI GATC 3 cut(s) 97, 130, 143
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 3 cut(s) 94, 127, 140
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 2 cut(s) 171, 174
BsuRI GGCC 1 cut(s) 344
BtsCI GGATG 2 cut(s) 133, 274
BtsIMutI CAGTG 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 343
CviAII CATG 1 cut(s) 159
CviJI RGCY 3 cut(s) 52, 189, 344
CviKI_1 RGCY 3 cut(s) 52, 189, 344
DdeI CTNAG 2 cut(s) 315, 347
DpnI GATC 3 cut(s) 96, 129, 142
DpnII GATC 3 cut(s) 94, 127, 140
Eco57I CTGAAG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 343
FaeI CATG 1 cut(s) 162
FaiI YATR 5 cut(s) 30, 32, 90, 116, 160
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 2 cut(s) 120, 281
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 344
Hin1II CATG 1 cut(s) 162
HinfI GANTC 2 cut(s) 110, 254
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 303, 318
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 315, 347
Hsp92II CATG 1 cut(s) 162
Kzo9I GATC 3 cut(s) 94, 127, 140
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 9 cut(s) 38, 151, 160, 195, 215, 300, 313, 347, 367
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 96, 129, 142
MboI GATC 3 cut(s) 94, 127, 140
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 140
MlyI GAGTC 2 cut(s) 104, 263
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 4 cut(s) 20, 35, 53, 356
MseI TTAA 2 cut(s) 339, 378
Mva1269I GAATGC 1 cut(s) 329
NdeII GATC 3 cut(s) 94, 127, 140
NlaIII CATG 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 332
PctI GAATGC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 2 cut(s) 104, 262
PpsI GAGTC 2 cut(s) 104, 262
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 140
SaqAI TTAA 2 cut(s) 339, 378
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 94, 127, 140
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 2 cut(s) 104, 263
SetI ASST 6 cut(s) 12, 27, 54, 64, 184, 212
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 275
Tru1I TTAA 2 cut(s) 339, 378
Tru9I TTAA 2 cut(s) 339, 378
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 144
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.