Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Forward (+)

21467138 .. 21468680

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCCACTGGTCGCCTCATTGCTAAATTTGAAAGACTTCTTTATCATTCATCCCCAGCTATTCATCAGTCACCCAATTCTGTAAGTTGTCATACTTGCTGCTCAAGGAACCAGGTTAATCAGGTTGGGGTCTATGGTCTGGAAATAAGGGCCGAAGAACTTGGAGATTCAAAGAGATTGGGTGCTCATCGCTTTGCATTTTGTGCTTATTTTGTCCCTTATTTGTCAGGAATTCAGTTATTCAAGAATGGAAATGCTGATTATGTAGATGCTAATAATAGGTTTTCTGGTTCTGATGTGCCAAGCGCAAGCCTGGATAGTGACACATCCAAAAATTCCTCTAGCATTGGGAGTCTTCCACTATTTTCATTACTTCTTCCTCAACCTGATCATAATGAAGATGCGGTCACTCCACCGCTTCTTGTCAAAGATCCTAAGCAACTTTATGTATTTGTTGAAGATCTTACATCTGTTGCCCTTCATTTTAGGATAAAAGAGCTGGTACGAGGTGATGGACTGTCACATTCTAAAGCTTATGGAGATCCAACAAATCTAAACTCTATAAATCTAAATGATCTATATCCCAGATCCCAGTTAGTAATAAAACTGGCTTCAATCTCTTTAAAATGTAAAATATGTGTTTGTAATCGACCATTGTTAGTTTCACAAAATGAAGTACTCAGTGGCATGGTATCCAATTACCGGATACCTGATGGTAACTTACGTGCAGCATTTCTGACTTACCATTCACTCGGTCATTTGGTCCATAGAAGTAAAAAATTTGAGTCTCATAACTTGGATACTTGTATTGTATCTCCAGTTGTGGGTCTGCAAAGCTACAATGCTCAGGTAGTCATGGCTAATAGTGCTGAATGCTGGTTCAAGTTAAGGTCATCAGCACCAAGGCAGACAACAACAACACCACGGGGCTTAAACCCTTGTGGAGTACTAGGGGAACGTTTGAGGACACTTGAGGAAACAGCATCGCTTATGGCAAGAGCTGTTGTGAGCAAAGGAACATATGTAAACATGCATCTGGACTATGAGTTCTTCCTTTCTTGGCAACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

357

Amino Acids

39.44

Weight (kDa)

8.74

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	404, 416
AclI	AACGTT	1 cut(s)	958
AclWI	GGATC	3 cut(s)	425, 536, 582
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	26, 231, 334, 779
AfaI	GTAC	3 cut(s)	504, 678, 948
AfiI	CCNNNNNNNGG	2 cut(s)	702, 824
AgsI	TTSAA	6 cut(s)	32, 171, 244, 458, 615, 883
AjnI	CCWGG	2 cut(s)	111, 312
AloI	GAACNNNNNNTCC	2 cut(s)	1031, 1063
AluBI	AGCT	5 cut(s)	59, 499, 533, 837, 1001
AluI	AGCT	5 cut(s)	59, 499, 533, 837, 1001
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	3 cut(s)	425, 536, 582
AoxI	GGCC	2 cut(s)	3, 150
ApeKI	GCWGC	2 cut(s)	99, 728
ApoI	RAATTY	4 cut(s)	26, 231, 334, 779
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	150, 763
AsuHPI	GGTGA	2 cut(s)	63, 521
AvaII	GGWCC	1 cut(s)	763
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	86, 740
BccI	CCATC	2 cut(s)	506, 707
BciT130I	CCWGG	2 cut(s)	113, 314
BciVI	GTATCC	3 cut(s)	699, 703, 793
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	3 cut(s)	342, 950, 1069
BfuI	GTATCC	3 cut(s)	699, 703, 793
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	100, 729
BlsI	GCNGC	2 cut(s)	101, 730
BmcAI	AGTACT	2 cut(s)	678, 948
Bme1390I	CCNGG	2 cut(s)	113, 314
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	2 cut(s)	150, 763
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	2 cut(s)	113, 314
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	4 cut(s)	259, 391, 992, 1042
BmuI	ACTGGG	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	2 cut(s)	435, 846
BpuEI	CTTGAG	2 cut(s)	88, 992
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	902, 923
BsaWI	WCCGGW	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	2 cut(s)	702, 824
Bse1I	ACTGG	4 cut(s)	13, 592, 612, 818
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	113, 314
BseDI	CCNNGG	2 cut(s)	902, 923
BseGI	GGATG	2 cut(s)	50, 326
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	702, 824
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	694, 860
BseNI	ACTGG	4 cut(s)	13, 592, 612, 818
BseXI	GCAGC	2 cut(s)	86, 740
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	2 cut(s)	5, 152
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	702, 824
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	878
BsnI	GGCC	2 cut(s)	5, 152
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
BspACI	CCGC	2 cut(s)	404, 416
BspANI	GGCC	2 cut(s)	5, 152
BspCNI	CTCAG	2 cut(s)	693, 859
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	3 cut(s)	425, 536, 582
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	4 cut(s)	13, 592, 612, 818
BssECI	CCNNGG	2 cut(s)	902, 923
BssMI	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
BssT1I	CCWWGG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	113, 314
Bst4CI	ACNGT	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	435, 680, 846
BstDSI	CCRYGG	1 cut(s)	923
BstF5I	GGATG	2 cut(s)	50, 326
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	6 cut(s)	391, 433, 463, 544, 577, 590
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 866
BstNI	CCWGG	2 cut(s)	113, 314
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	2 cut(s)	111, 312
BstV1I	GCAGC	2 cut(s)	86, 740
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	4 cut(s)	430, 460, 541, 587
BstYI	RGATCY	4 cut(s)	430, 460, 541, 587
BsuI	GTATCC	3 cut(s)	699, 703, 793
BsuRI	GGCC	2 cut(s)	5, 152
BtgI	CCRYGG	1 cut(s)	923
BtgZI	GCGATG	2 cut(s)	173, 969
BtsCI	GGATG	2 cut(s)	50, 326
BtsIMutI	CAGTG	2 cut(s)	6, 688
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	150, 763
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	503, 677, 947
CviAII	CATG	3 cut(s)	688, 856, 1030
CviQI	GTAC	3 cut(s)	503, 677, 947
DdeI	CTNAG	3 cut(s)	435, 680, 846
DpnI	GATC	6 cut(s)	390, 432, 462, 543, 576, 589
DpnII	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
DraI	TTTAAA	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	902
Eco47I	GGWCC	1 cut(s)	763
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	111, 312
EcoT14I	CCWWGG	1 cut(s)	902
EcoT22I	ATGCAT	1 cut(s)	1035
ErhI	CCWWGG	1 cut(s)	902
FaeI	CATG	3 cut(s)	691, 859, 1033
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	687, 855, 1029
FauNDI	CATATG	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	100, 729
FokI	GGATG	2 cut(s)	37, 313
Fsp4HI	GCNGC	2 cut(s)	100, 729
FspBI	CTAG	3 cut(s)	342, 950, 1069
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	100, 729
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	5, 152
HapII	CCGG	1 cut(s)	703
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	691, 859, 1033
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	3 cut(s)	167, 352, 785
HpaII	CCGG	1 cut(s)	703
HphI	GGTGA	2 cut(s)	63, 521
Hpy166II	GTNNAC	1 cut(s)	1027
Hpy188I	TCNGA	2 cut(s)	295, 738
Hpy188III	TCNNGA	4 cut(s)	140, 228, 244, 1037
Hpy8I	GTNNAC	1 cut(s)	1027
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	2 cut(s)	724, 958
HpyCH4V	TGCA	4 cut(s)	197, 728, 832, 1033
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 866
HpyF3I	CTNAG	3 cut(s)	435, 680, 846
HpySE526I	ACGT	2 cut(s)	724, 958
Hsp92II	CATG	3 cut(s)	691, 859, 1033
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
Lsp1109I	GCAGC	2 cut(s)	86, 740
LweI	GCATC	4 cut(s)	259, 391, 992, 1042
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	3 cut(s)	342, 950, 1069
MaeII	ACGT	2 cut(s)	724, 958
MaeIII	GTNAC	5 cut(s)	69, 320, 406, 519, 716
MalI	GATC	6 cut(s)	390, 432, 462, 543, 576, 589
MboI	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
MboII	GAAGA	6 cut(s)	167, 347, 368, 410, 470, 1042
MflI	RGATCY	4 cut(s)	430, 460, 541, 587
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	26, 76, 231, 334, 697, 779
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	361, 794
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	6 cut(s)	26, 349, 390, 500, 957, 967
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1035
MroXI	GAANNNNTTC	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	117, 623, 887, 932
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	703
MspR9I	CCNGG	2 cut(s)	113, 314
Mva1269I	GAATGC	1 cut(s)	878
MvaI	CCWGG	2 cut(s)	113, 314
MwoI	GCNNNNNNNGC	2 cut(s)	203, 866
NdeI	CATATG	1 cut(s)	1021
NdeII	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
NlaIII	CATG	3 cut(s)	691, 859, 1033
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	4 cut(s)	69, 320, 406, 519
NsiI	ATGCAT	1 cut(s)	1035
NspI	RCATGY	1 cut(s)	1033
PctI	GAATGC	1 cut(s)	878
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	101, 730
PleI	GAGTC	2 cut(s)	360, 793
PpsI	GAGTC	2 cut(s)	360, 793
Ppu21I	YACGTR	1 cut(s)	725
Psp1406I	AACGTT	1 cut(s)	958
Psp6I	CCWGG	2 cut(s)	111, 312
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	111, 312
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	150, 763
PsuI	RGATCY	4 cut(s)	430, 460, 541, 587
RsaI	GTAC	3 cut(s)	504, 678, 948
RsaNI	GTAC	3 cut(s)	503, 677, 947
SaqAI	TTAA	4 cut(s)	117, 623, 887, 932
SatI	GCNGC	2 cut(s)	100, 729
Sau3AI	GATC	6 cut(s)	388, 430, 460, 541, 574, 587
Sau96I	GGNCC	2 cut(s)	150, 763
ScaI	AGTACT	2 cut(s)	678, 948
SchI	GAGTC	2 cut(s)	361, 794
ScrFI	CCNGG	2 cut(s)	113, 314
SduI	GDGCHC	1 cut(s)	187
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	4 cut(s)	259, 391, 992, 1042
SinI	GGWCC	1 cut(s)	763
SmlI	CTYRAG	2 cut(s)	103, 971
SmoI	CTYRAG	2 cut(s)	103, 971
Sse9I	AATT	6 cut(s)	26, 76, 231, 334, 697, 779
SsiI	CCGC	2 cut(s)	404, 416
SspMI	CTAG	3 cut(s)	342, 950, 1069
StyD4I	CCNGG	2 cut(s)	111, 312
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	2 cut(s)	727, 961
TaqI	TCGA	1 cut(s)	649
TaqII	GACCGA	1 cut(s)	743
TasI	AATT	6 cut(s)	26, 76, 231, 334, 697, 779
TatI	WGTACW	2 cut(s)	676, 946
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	4 cut(s)	117, 623, 887, 932
Tru9I	TTAA	4 cut(s)	117, 623, 887, 932
TscAI	CASTG	2 cut(s)	13, 688
TseFI	GTSAC	4 cut(s)	69, 320, 406, 519
TseI	GCWGC	2 cut(s)	99, 728
Tsp45I	GTSAC	4 cut(s)	69, 320, 406, 519
TspDTI	ATGAA	6 cut(s)	39, 53, 357, 411, 470, 687
TspRI	CASTG	2 cut(s)	13, 688
VpaK11BI	GGWCC	1 cut(s)	763
XapI	RAATTY	4 cut(s)	26, 231, 334, 779
XceI	RCATGY	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	3 cut(s)	342, 950, 1069
ZrmI	AGTACT	2 cut(s)	678, 948
Zsp2I	ATGCAT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.