Rh4DG125000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
20279816 .. 20281234
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG125000.1

Sequence Viewer

Length: 382 bp
ATGTTCTTAATTGTTGTCATACCAGAACTGTTTCTGGAGATACTGAACGACATTGTTGTCAACTTGGAAGTCCTTGGTGAGAACATCAAGGTTGATTGGAGGGTTGGAGCCGAACACTGCATTGGCTATGGCATAGCCATTTGCCATTCAAAAGACAGACAAGTAACTCCAGCAGGAAAATTTGATCAACTCAAATTTCCAACAAGCTTAAACAGCTTGGACTCAAATTTGCGCGAAGGAAAGGATTGCGCCATGCACAGGAAGCTGTTTCTGCTGAGTCTAGTCAAACTGATGGAGATGGAGAAGTACAGGAAATGGCACACAAGAAAAAGAGTTTGTGGCTTAAGCGAAGAACAGGAAGCTCAAATTAGATCTCTTTATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.72

Weight (kDa)

7.69

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccII CGCG 1 cut(s) 234
AcsI RAATTY 3 cut(s) 179, 194, 226
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 258
AflII CTTAAG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 4 cut(s) 207, 216, 265, 362
AluI AGCT 4 cut(s) 207, 216, 265, 362
ApoI RAATTY 3 cut(s) 179, 194, 226
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 2 cut(s) 234, 251
AsuHPI GGTGA 1 cut(s) 89
BccI CCATC 2 cut(s) 286, 292
BclI TGATCA 1 cut(s) 184
BfaI CTAG 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 343
BglII AGATCT 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 109
BpmI CTGGAG 2 cut(s) 56, 153
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 258
Bsp143I GATC 2 cut(s) 184, 371
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 184, 371
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 30
BstAFI CTTAAG 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 275
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 2 cut(s) 234, 251
BstKTI GATC 2 cut(s) 187, 374
BstMBI GATC 2 cut(s) 184, 371
BstMWI GCNNNNNNNGC 3 cut(s) 213, 262, 271
BstUI CGCG 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
CfoI GCGC 2 cut(s) 234, 251
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 253
CviJI RGCY 8 cut(s) 110, 126, 137, 207, 216, 265, 342, 362
CviKI_1 RGCY 8 cut(s) 110, 126, 137, 207, 216, 265, 342, 362
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 275
DpnI GATC 2 cut(s) 186, 373
DpnII GATC 2 cut(s) 184, 371
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 20, 129, 134, 254, 381
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 184
FspBI CTAG 1 cut(s) 281
GlaI GCGC 2 cut(s) 233, 250
GsuI CTGGAG 2 cut(s) 56, 153
HhaI GCGC 2 cut(s) 234, 251
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 232, 249
HinP1I GCGC 2 cut(s) 232, 249
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 2 cut(s) 221, 277
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 120, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 262, 271
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 232, 249
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 371
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 7 cut(s) 20, 36, 159, 183, 244, 295, 341
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 186, 373
MboI GATC 2 cut(s) 184, 371
MboII GAAGA 1 cut(s) 362
MflI RGATCY 1 cut(s) 371
MluCI AATT 5 cut(s) 9, 179, 194, 226, 366
MlyI GAGTC 2 cut(s) 215, 286
MmeI TCCRAC 2 cut(s) 85, 224
MnlI CCTC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 8, 209, 344
MspCI CTTAAG 1 cut(s) 343
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 213, 262, 271
NdeII GATC 2 cut(s) 184, 371
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 30
PleI GAGTC 2 cut(s) 215, 285
PpsI GAGTC 2 cut(s) 215, 285
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 8, 209, 344
Sau3AI GATC 2 cut(s) 184, 371
SchI GAGTC 2 cut(s) 215, 286
SetI ASST 5 cut(s) 93, 209, 218, 267, 364
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 5 cut(s) 9, 179, 194, 226, 366
SspMI CTAG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 30
TasI AATT 5 cut(s) 9, 179, 194, 226, 366
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 3 cut(s) 8, 209, 344
Tru9I TTAA 3 cut(s) 8, 209, 344
TscAI CASTG 1 cut(s) 122
TspRI CASTG 1 cut(s) 122
Vha464I CTTAAG 1 cut(s) 343
XapI RAATTY 3 cut(s) 179, 194, 226
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.