Rorug06G0407600

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002045
Physical Location & Seq
Reverse (-)
55065524 .. 55066391
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0407600.1

Sequence Viewer

Length: 825 bp
ATGGGCACTGCTTCGGATGATTATACATCCTTGGTTTTCAAAGGGTGTTCAAAACAAATGTTCCCAAACAATGTCTACCCGGAAAACCTCAAACCCCTCATGGACTCGTTGGTCTCAAACTCTTCACTAGAGACTTTCTTGGCAGCCACAGCCACCTCTGGCGATGGCACTAACGGCATTAACGGTCTGTACCAGTGCCGCGGAGACCTCTCCCCCGCCGAGTGCAACACCTGCATAAGACAGATTCCACCTTTAGTCAGCCAACTCTGTGGAGAAACCAATGTAGCAGTCCGAGTCCAGCTCCGCGGATGCTACTTACGTTATGAGATTGCTGACTCAAAGCCATTTGATGCAACAGAATTTCTTTTCAAACGTTGTGAAGTTAATCAAGCAAGGGCTGCTGGGCTTGGGGAGAAAAGGGACACGGCTTTCGGCATATTGGAAAACGATGTCAAGAATAGTACTGGTGGAGTTGGTGGCTTCTACACCGGTGGCTATGACACAGTGAATGTTTCAGGACAATGCGAAGGTACCTTAGTGAACCAGGATTGTGTGGCTTGCCTGCAAAGTGCTTCTCAGAAGGCCAAGACCGAGTGTGGCGATTCCGTCACGGGGCAGATTTATCTCTACAAGTGCTCCATTAGCTACAAGTCTACAAACTCCTCGAATGCCAATGCCAATGGTGTGCCATATTCGCGTAAGGTCGGTGCAGGCTCTGGGAATCATCCAGCAGAGATGGTAGTGGCTATTTTGGCGGGATGTATTCTCGGTTTGATATTATTAGGTGCTGTTATCATTTACATTATAAAAGAGTGCAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

274

Amino Acids

29.08

Weight (kDa)

5.56

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 16 - 109 2e-15 Salt stress response/antifungal
Stress-antifung PF01657 161 - 218 1.1e-06 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 806
AarI CACCTGC 1 cut(s) 239
AasI GACNNNNNNGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 239
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 530
AccI GTMKAC 2 cut(s) 75, 653
AccII CGCG 3 cut(s) 201, 306, 697
AciI CCGC 6 cut(s) 199, 201, 216, 304, 306, 755
AclI AACGTT 1 cut(s) 373
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 3 cut(s) 191, 463, 532
AfiI CCNNNNNNNGG 1 cut(s) 612
AgeI ACCGGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 40, 51, 370
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 2 cut(s) 301, 645
AluI AGCT 2 cut(s) 301, 645
Alw21I GWGCWC 1 cut(s) 638
Alw26I GTCTC 3 cut(s) 118, 125, 198
AlwNI CAGNNNCTG 1 cut(s) 716
AoxI GGCC 1 cut(s) 582
ApeKI GCWGC 2 cut(s) 143, 398
ApoI RAATTY 1 cut(s) 359
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AsiGI ACCGGT 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 530
AsuC2I CCSGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BanI GGYRCC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 638
BbvI GCAGC 2 cut(s) 155, 385
BccI CCATC 2 cut(s) 158, 730
BceAI ACGGC 2 cut(s) 190, 441
BciT130I CCWGG 1 cut(s) 545
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 118, 125, 198
BfaI CTAG 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 3 cut(s) 144, 199, 399
BlsI GCNGC 3 cut(s) 145, 200, 400
BmcAI AGTACT 1 cut(s) 463
Bme1390I CCNGG 2 cut(s) 80, 545
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 2 cut(s) 80, 545
BmsI GCATC 2 cut(s) 299, 340
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpuMI CCSGG 1 cut(s) 80
BsaI GGTCTC 2 cut(s) 118, 198
BsaJI CCNNGG 3 cut(s) 30, 199, 304
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 193, 469
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 3 cut(s) 30, 199, 304
BseGI GGATG 5 cut(s) 22, 26, 314, 724, 764
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 193, 469
BseRI GAGGAG 1 cut(s) 652
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 155, 385
BseYI CCCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 3 cut(s) 201, 306, 697
BshFI GGCC 1 cut(s) 584
BshNI GGYRCC 1 cut(s) 530
BshTI ACCGGT 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 638
BsiSI CCGG 2 cut(s) 80, 489
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 612
BsmAI GTCTC 3 cut(s) 118, 125, 198
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 1 cut(s) 584
Bso31I GGTCTC 2 cut(s) 118, 198
Bsp1286I GDGCHC 2 cut(s) 8, 638
Bsp143I GATC 1 cut(s) 818
BspACI CCGC 6 cut(s) 199, 201, 216, 304, 306, 755
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 3 cut(s) 201, 306, 697
BspHI TCATGA 1 cut(s) 821
BspLI GGNNCC 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 2 cut(s) 118, 198
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 2 cut(s) 193, 469
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 3 cut(s) 30, 199, 304
BssMI GATC 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 185, 505
Bst6I CTCTTC 1 cut(s) 127
BstAPI GCANNNNNTGC 2 cut(s) 231, 398
BstC8I GCNNGC 3 cut(s) 559, 563, 712
BstDEI CTNAG 2 cut(s) 535, 576
BstDSI CCRYGG 2 cut(s) 199, 304
BstF5I GGATG 5 cut(s) 22, 26, 314, 724, 764
BstFNI CGCG 3 cut(s) 201, 306, 697
BstKTI GATC 1 cut(s) 821
BstMAI GTCTC 3 cut(s) 118, 125, 198
BstMBI GATC 1 cut(s) 818
BstMWI GCNNNNNNNGC 7 cut(s) 149, 174, 231, 398, 642, 694, 752
BstNI CCWGG 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 78, 543
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 3 cut(s) 201, 306, 697
BstV1I GCAGC 2 cut(s) 155, 385
BstXI CCANNNNNNTGG 1 cut(s) 269
BsuRI GGCC 1 cut(s) 584
BtgI CCRYGG 2 cut(s) 199, 304
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 5 cut(s) 22, 26, 314, 724, 764
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 3 cut(s) 6, 200, 510
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 3 cut(s) 559, 563, 712
CaiI CAGNNNCTG 1 cut(s) 716
CciI TCATGA 1 cut(s) 821
Cfr10I RCCGGY 1 cut(s) 488
Cfr42I CCGCGG 2 cut(s) 202, 307
Csp6I GTAC 3 cut(s) 190, 462, 531
CspAI ACCGGT 1 cut(s) 488
CviAII CATG 2 cut(s) 100, 822
CviQI GTAC 3 cut(s) 190, 462, 531
DdeI CTNAG 2 cut(s) 535, 576
DpnI GATC 1 cut(s) 820
DpnII GATC 1 cut(s) 818
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 30
Eco31I GGTCTC 2 cut(s) 118, 198
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 103, 825
FaiI YATR 9 cut(s) 24, 101, 236, 324, 437, 498, 691, 806, 823
FaqI GGGAC 1 cut(s) 434
FatI CATG 2 cut(s) 99, 821
FauI CCCGC 2 cut(s) 223, 748
FblI GTMKAC 2 cut(s) 75, 653
Fnu4HI GCNGC 3 cut(s) 144, 199, 399
FokI GGATG 5 cut(s) 13, 29, 321, 711, 771
Fsp4HI GCNGC 3 cut(s) 144, 199, 399
FspBI CTAG 1 cut(s) 128
GluI GCNGC 3 cut(s) 144, 199, 399
GsaI CCCAGC 1 cut(s) 405
HaeIII GGCC 1 cut(s) 584
HapII CCGG 2 cut(s) 80, 489
Hin1II CATG 2 cut(s) 103, 825
HinfI GANTC 6 cut(s) 104, 244, 294, 335, 602, 721
HpaII CCGG 2 cut(s) 80, 489
Hpy166II GTNNAC 3 cut(s) 76, 541, 654
Hpy188I TCNGA 3 cut(s) 16, 293, 579
Hpy188III TCNNGA 3 cut(s) 454, 516, 822
Hpy8I GTNNAC 3 cut(s) 76, 541, 654
HpyAV CCTTC 2 cut(s) 521, 574
HpyCH4III ACNGT 2 cut(s) 185, 505
HpyCH4IV ACGT 2 cut(s) 319, 373
HpyCH4V TGCA 6 cut(s) 225, 234, 353, 565, 710, 816
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 174, 231, 398, 642, 694, 752
HpyF3I CTNAG 2 cut(s) 535, 576
HpySE526I ACGT 2 cut(s) 319, 373
Hsp92II CATG 2 cut(s) 103, 825
KpnI GGTACC 1 cut(s) 534
KspI CCGCGG 2 cut(s) 202, 307
Kzo9I GATC 1 cut(s) 818
LmnI GCTCC 2 cut(s) 306, 641
Lsp1109I GCAGC 2 cut(s) 155, 385
LweI GCATC 2 cut(s) 299, 340
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 319, 373
MaeIII GTNAC 1 cut(s) 607
MalI GATC 1 cut(s) 820
MboI GATC 1 cut(s) 818
MboII GAAGA 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 8, 638
MluCI AATT 1 cut(s) 359
MlyI GAGTC 3 cut(s) 98, 303, 329
MnlI CCTC 5 cut(s) 98, 107, 166, 218, 673
MseI TTAA 2 cut(s) 180, 384
MspA1I CMGCKG 2 cut(s) 201, 306
MspI CCGG 2 cut(s) 80, 489
MspR9I CCNGG 2 cut(s) 80, 545
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 3 cut(s) 201, 306, 697
MwoI GCNNNNNNNGC 7 cut(s) 149, 174, 231, 398, 642, 694, 752
NciI CCSGG 1 cut(s) 80
NdeII GATC 1 cut(s) 818
NlaIII CATG 2 cut(s) 103, 825
NlaIV GGNNCC 1 cut(s) 532
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 607
PagI TCATGA 1 cut(s) 821
PaqCI CACCTGC 1 cut(s) 239
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 244, 602, 721
PinAI ACCGGT 1 cut(s) 488
PkrI GCNGC 3 cut(s) 145, 200, 400
PleI GAGTC 3 cut(s) 98, 302, 329
PpsI GAGTC 3 cut(s) 98, 302, 329
PsiI TTATAA 1 cut(s) 806
Psp1406I AACGTT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 716
RsaI GTAC 3 cut(s) 191, 463, 532
RsaNI GTAC 3 cut(s) 190, 462, 531
SacII CCGCGG 2 cut(s) 202, 307
SaqAI TTAA 2 cut(s) 180, 384
SatI GCNGC 3 cut(s) 144, 199, 399
Sau3AI GATC 1 cut(s) 818
ScaI AGTACT 1 cut(s) 463
SchI GAGTC 3 cut(s) 98, 303, 329
ScrFI CCNGG 2 cut(s) 80, 545
SduI GDGCHC 2 cut(s) 8, 638
SfaNI GCATC 2 cut(s) 299, 340
Sfr303I CCGCGG 2 cut(s) 202, 307
SgrAI CRCCGGYG 1 cut(s) 488
SgrBI CCGCGG 2 cut(s) 202, 307
Sse9I AATT 1 cut(s) 359
SsiI CCGC 6 cut(s) 199, 201, 216, 304, 306, 755
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 78, 543
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 185, 505
TaiI ACGT 2 cut(s) 322, 376
TaqI TCGA 1 cut(s) 665
TaqII GACCGA 1 cut(s) 605
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 461
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 3 cut(s) 244, 602, 721
Tru1I TTAA 2 cut(s) 180, 384
Tru9I TTAA 2 cut(s) 180, 384
TscAI CASTG 3 cut(s) 13, 200, 510
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 143, 398
Tsp45I GTSAC 1 cut(s) 607
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 3 cut(s) 13, 200, 510
XapI RAATTY 1 cut(s) 359
XmiI GTMKAC 2 cut(s) 75, 653
XspI CTAG 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.