Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Reverse (-)

63123706 .. 63125408

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTCAATAAAACCTGTAATGCTGTTGATATTAATGTCTTTTTGAAGAGTGAAAATAGGAAACAGCAAAAAGATAAGGTCTCAAAAAAGTTGAAAAGAAAAAATGCTCCAGCATTGAAACGAGAATACAATTGTTATTCTAGGAAGGGATCTCATGCTAGCTTGGCTGGCTCAGATGGTTCTTTGAAGCTTCGGATGGATCAGAGTGATATATCAGATATCTTGATAAAGGAGCCGGTTAGCGGTGATGGACATTCACATTCAAAAGTGTATGGCGATCCAACTACACTAGACTCTATAAATCTAAATGATCTACATCCCAGAACTTGGTATTCAGTGGCATGGTATCCTATTTACAGGATACCTGATGGTAACTACCGTGCAGCATTTTTGACCTACCATTCACTTGGTTGTCTGGTTCGTAGAAATGCCAACTTTGAGTCTCGTAGTGTGGATGACTGTATTGTATCTCCAGTTGTGGGTCTTCAGAGTTACAACGCTCAGAGTGAATGCTGGTTCCAGTTAAGGCCCTCAGCACCAGCACAGACAACATTATCAAACATAAGCCCTTGTGAAATACTGGAGGAGCGTTTGAGGACACTTGAGGAGACAGCATCTCTTATGTCAAGAGCTGTTGTGAGCAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTACGAGTTCTTCCTCTCTAGGCGGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

235

Amino Acids

26.65

Weight (kDa)

9.28

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF789	PF05623	95 - 230	7.2e-34	Protein of unknown function (DUF789)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	327
AciI	CCGC	2 cut(s)	243, 700
AclWI	GGATC	3 cut(s)	157, 207, 272
AcuI	CTGAAG	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	242, 327, 479
AgsI	TTSAA	5 cut(s)	46, 94, 118, 187, 264
AluBI	AGCT	3 cut(s)	162, 190, 632
AluI	AGCT	3 cut(s)	162, 190, 632
Alw26I	GTCTC	3 cut(s)	85, 447, 602
AlwI	GGATC	3 cut(s)	157, 207, 272
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	1 cut(s)	257
AsuNHI	GCTAGC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	476
BbvCI	CCTCAGC	1 cut(s)	532
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	4 cut(s)	170, 190, 242, 362
BciVI	GTATCC	2 cut(s)	354, 357
BcoDI	GTCTC	3 cut(s)	85, 447, 602
BfaI	CTAG	5 cut(s)	141, 159, 290, 696, 706
BfoI	RGCGCY	1 cut(s)	706
BfuI	GTATCC	2 cut(s)	354, 357
BisI	GCNGC	2 cut(s)	384, 701
BlsI	GCNGC	2 cut(s)	385, 702
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	2 cut(s)	234, 518
BmsI	GCATC	2 cut(s)	623, 679
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	3 cut(s)	93, 456, 602
Bpu10I	CCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 327, 479
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	3 cut(s)	473, 520, 585
Bse8I	GATNNNNATC	1 cut(s)	315
BseGI	GGATG	4 cut(s)	201, 316, 460, 670
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	242, 327, 479
BseMII	CTCAG	3 cut(s)	186, 515, 546
BseNI	ACTGG	3 cut(s)	473, 520, 585
BseRI	GAGGAG	2 cut(s)	599, 620
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	242, 327, 479
BsmAI	GTCTC	3 cut(s)	85, 447, 602
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	529
Bso31I	GGTCTC	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	149, 199, 277, 310
BspACI	CCGC	2 cut(s)	243, 700
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	3 cut(s)	185, 514, 545
BspLI	GGNNCC	2 cut(s)	234, 518
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	157, 207, 272
BspTNI	GGTCTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	473, 520, 585
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	4 cut(s)	149, 199, 277, 310
Bst4CI	ACNGT	2 cut(s)	380, 461
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	160, 169
BstDEI	CTNAG	3 cut(s)	172, 501, 532
BstF5I	GGATG	4 cut(s)	201, 316, 460, 670
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	4 cut(s)	152, 202, 280, 313
BstMAI	GTCTC	3 cut(s)	85, 447, 602
BstMBI	GATC	4 cut(s)	149, 199, 277, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 168
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	149
BsuI	GTATCC	2 cut(s)	354, 357
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	4 cut(s)	201, 316, 460, 670
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	160, 169
CfoI	GCGC	1 cut(s)	705
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	528
CviAII	CATG	2 cut(s)	155, 342
CviJI	RGCY	8 cut(s)	162, 167, 171, 190, 235, 529, 567, 632
CviKI_1	RGCY	8 cut(s)	162, 167, 171, 190, 235, 529, 567, 632
DdeI	CTNAG	3 cut(s)	172, 501, 532
DpnI	GATC	4 cut(s)	151, 201, 279, 312
DpnII	GATC	4 cut(s)	149, 199, 277, 310
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	2 cut(s)	158, 345
FaiI	YATR	8 cut(s)	156, 212, 273, 299, 343, 563, 623, 653
FatI	CATG	2 cut(s)	154, 341
Fnu4HI	GCNGC	2 cut(s)	384, 701
FokI	GGATG	4 cut(s)	208, 303, 467, 657
Fsp4HI	GCNGC	2 cut(s)	384, 701
FspBI	CTAG	5 cut(s)	141, 159, 290, 696, 706
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	2 cut(s)	384, 701
GsuI	CTGGAG	3 cut(s)	93, 456, 602
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	529
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	2 cut(s)	158, 345
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	2 cut(s)	293, 440
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	6 cut(s)	175, 195, 204, 217, 489, 504
Hpy188III	TCNNGA	3 cut(s)	223, 627, 674
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	380, 461
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 168
HpyF3I	CTNAG	3 cut(s)	172, 501, 532
Hsp92II	CATG	2 cut(s)	158, 345
HspAI	GCGC	1 cut(s)	703
Kzo9I	GATC	4 cut(s)	149, 199, 277, 310
LmnI	GCTCC	3 cut(s)	112, 232, 586
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	2 cut(s)	623, 679
MaeI	CTAG	5 cut(s)	141, 159, 290, 696, 706
MaeIII	GTNAC	2 cut(s)	371, 491
MalI	GATC	4 cut(s)	151, 201, 279, 312
MboI	GATC	4 cut(s)	149, 199, 277, 310
MboII	GAAGA	3 cut(s)	58, 476, 679
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	2 cut(s)	287, 449
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	541, 577, 588, 598, 701
MseI	TTAA	2 cut(s)	33, 524
MspI	CCGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	164, 168
NdeII	GATC	4 cut(s)	149, 199, 277, 310
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	158, 345
NlaIV	GGNNCC	2 cut(s)	234, 518
PctI	GAATGC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	385, 702
PleI	GAGTC	2 cut(s)	287, 448
PpsI	GAGTC	2 cut(s)	287, 448
PshBI	ATTAAT	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	234, 518
PspPI	GGNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	33, 524
SatI	GCNGC	2 cut(s)	384, 701
Sau3AI	GATC	4 cut(s)	149, 199, 277, 310
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	2 cut(s)	287, 449
SetI	ASST	7 cut(s)	17, 81, 164, 192, 367, 398, 634
SfaNI	GCATC	2 cut(s)	623, 679
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	243, 700
SspMI	CTAG	5 cut(s)	141, 159, 290, 696, 706
TaaI	ACNGT	2 cut(s)	380, 461
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	33, 524
Tru9I	TTAA	2 cut(s)	33, 524
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	383
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	33
XspI	CTAG	5 cut(s)	141, 159, 290, 696, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.