Rorug06G0407500

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002045
Physical Location & Seq
Forward (+)
55063282 .. 55064850
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0407500.1

Sequence Viewer

Length: 912 bp
ATGCAGCTTATGAAGACGTTACACATCATCAAGTACTGGCTAACAGAGCACCCTACCATTGTAAACTTCCGGTGGAGTTCCACCCAATCATGGGGCTCCACGTGGTCTTTCCTCTTCACCGTCATCCCCGCCTACCTCGCCGTCGCCGTTACCCTCCACCTCATCCTCACCATCTTCCGCCGCCGCCGTCCGGTGCCGCTCGGCCCAATCCCGGCCGCGCACAGCCTCCTGATGGCCTTAATCTCCGCCGTGATCTTCGTCGGCATCCTCCTCTCCTCCGCCGCAGAGATTCGCGACACGCGGTGGCTCTGGCGGCGCACCAAGACCACCCCGTTCCAGTGGCTCCTCTGCTTCCCTCTCGGCACGCGCCCCTCCGGGCGCGTCTTCTTCTGGTCCTACGTCTTCTACCTATCCCGGTTCCTCCACCTGTTCCGCACATTCTTCACCGTCCTCCGGCGCCGGCGACTCTCCTCCTTCCACCTCTTCAACCAATCCATCCTCATCTTCATGTCCTTCCTCTGGCTCGAGTTCTCTCAATCGTTTCAGGTCCTGGCCATACTCTCCTCCAGTCTGCTCTACTCCGTGGTCTACGGGTACCGGTTCTGGATCGGAGTCGGGTTGCGCGGCGCGTGCTTCCCACTCGTGGTGAATTGCCAGGTGGCGTTGCTGGTATGCAACTTGGCCTGCCACGTCGGCGTTCTGTTGCTTCAGGTTTTCAAAGGCGGGTGCAACGGAATTGGGGCGTGGGTGTTCAACTCTGTGCTCAATGCCGCCATTCTTTTGCTGTTCATGAAGTTCTATGTGAAAACGCATTTGAAGAATTCAAAGGTGGATGTTGAGGTTGAAGAAGAGAGTAGTTCCACACATTGGGGATCTGGTTTGGAGTCAAAGAATGAGGTTAAAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

303

Amino Acids

34.89

Weight (kDa)

10.11

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 32 - 276 7.6e-41 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 594
AccB1I GGYRCC 3 cut(s) 193, 456, 594
AccB7I CCANNNNNTGG 1 cut(s) 867
AccBSI CCGCTC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 588
AccII CGCG 7 cut(s) 218, 294, 301, 367, 381, 624, 629
AclWI GGATC 2 cut(s) 614, 880
AcoI YGGCCR 2 cut(s) 213, 552
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 692
AcvI CACGTG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 457
AdeI CACNNNGTG 1 cut(s) 303
AfaI GTAC 2 cut(s) 35, 596
AfiI CCNNNNNNNGG 9 cut(s) 90, 91, 190, 211, 232, 453, 519, 643, 867
AgeI ACCGGT 1 cut(s) 597
AgsI TTSAA 6 cut(s) 487, 718, 754, 817, 825, 845
AjiI CACGTC 1 cut(s) 691
AjnI CCWGG 2 cut(s) 549, 654
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 2 cut(s) 51, 765
AlwI GGATC 2 cut(s) 614, 880
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 5 cut(s) 202, 213, 234, 552, 681
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 820
AsiGI ACCGGT 1 cut(s) 597
Asp718I GGTACC 1 cut(s) 594
AspLEI GCGC 7 cut(s) 220, 318, 369, 381, 459, 624, 629
AspS9I GGNCC 3 cut(s) 203, 393, 547
AsuC2I CCSGG 3 cut(s) 212, 376, 415
AsuHPI GGTGA 4 cut(s) 109, 160, 436, 658
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 2 cut(s) 393, 547
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 3 cut(s) 193, 456, 594
BanII GRGCYC 1 cut(s) 98
BauI CACGAG 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 102
BbsI GAAGAC 3 cut(s) 20, 376, 394
Bbv12I GWGCWC 2 cut(s) 51, 765
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 179, 226, 503
BceAI ACGGC 4 cut(s) 125, 131, 171, 233
BciT130I CCWGG 2 cut(s) 551, 656
BcnI CCSGG 3 cut(s) 212, 376, 415
BfaI CTAG 1 cut(s) 910
BfoI RGCGCY 1 cut(s) 460
BglI GCCNNNNNGGC 1 cut(s) 693
BisI GCNGC 9 cut(s) 5, 181, 184, 197, 216, 282, 314, 625, 771
BlsI GCNGC 9 cut(s) 6, 182, 185, 198, 217, 283, 315, 626, 772
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 5 cut(s) 212, 376, 415, 551, 656
Bme18I GGWCC 2 cut(s) 393, 547
BmeT110I CYCGRG 1 cut(s) 524
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 3 cut(s) 203, 393, 547
BmiI GGNNCC 6 cut(s) 97, 195, 344, 419, 458, 596
BmrFI CCNGG 5 cut(s) 212, 376, 415, 551, 656
BmsI GCATC 1 cut(s) 273
BpiI GAAGAC 3 cut(s) 20, 376, 394
BpmI CTGGAG 1 cut(s) 550
BpuMI CCSGG 3 cut(s) 212, 376, 415
BsaAI YACGTR 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 3 cut(s) 69, 190, 597
Bsc4I CCNNNNNNNGG 9 cut(s) 90, 91, 190, 211, 232, 453, 519, 643, 867
Bse118I RCCGGY 2 cut(s) 459, 597
Bse1I ACTGG 3 cut(s) 41, 337, 567
BseBI CCWGG 2 cut(s) 551, 656
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 5 cut(s) 123, 162, 264, 495, 838
BseLI CCNNNNNNNGG 9 cut(s) 90, 91, 190, 211, 232, 453, 519, 643, 867
BseNI ACTGG 3 cut(s) 41, 337, 567
BseRI GAGGAG 5 cut(s) 260, 265, 335, 460, 553
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 7 cut(s) 218, 294, 301, 367, 381, 624, 629
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 5 cut(s) 204, 215, 236, 554, 683
BshNI GGYRCC 3 cut(s) 193, 456, 594
BshTI ACCGGT 1 cut(s) 597
BsiEI CGRYCG 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 51, 765
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 8 cut(s) 70, 191, 212, 375, 415, 454, 460, 598
BslI CCNNNNNNNGG 9 cut(s) 90, 91, 190, 211, 232, 453, 519, 643, 867
BsnI GGCC 5 cut(s) 204, 215, 236, 554, 683
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 51, 98, 765
Bsp143I GATC 3 cut(s) 252, 606, 872
Bsp68I TCGCGA 1 cut(s) 294
BspANI GGCC 5 cut(s) 204, 215, 236, 554, 683
BspFNI CGCG 7 cut(s) 218, 294, 301, 367, 381, 624, 629
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 6 cut(s) 97, 195, 344, 419, 458, 596
BspPI GGATC 2 cut(s) 614, 880
BspT107I GGYRCC 3 cut(s) 193, 456, 594
BsrBI CCGCTC 1 cut(s) 199
BsrFI RCCGGY 2 cut(s) 459, 597
BsrI ACTGG 3 cut(s) 41, 337, 567
BssAI RCCGGY 2 cut(s) 459, 597
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 3 cut(s) 252, 606, 872
BssNI GRCGYC 1 cut(s) 457
BssSI CACGAG 1 cut(s) 641
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 2 cut(s) 551, 656
Bst4CI ACNGT 2 cut(s) 121, 448
Bst6I CTCTTC 3 cut(s) 119, 488, 843
BstACI GRCGYC 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 102
BstC8I GCNNGC 4 cut(s) 365, 461, 631, 685
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 5 cut(s) 123, 162, 264, 495, 838
BstFNI CGCG 7 cut(s) 218, 294, 301, 367, 381, 624, 629
BstH2I RGCGCY 1 cut(s) 460
BstHHI GCGC 7 cut(s) 220, 318, 369, 381, 459, 624, 629
BstKTI GATC 3 cut(s) 255, 609, 875
BstMBI GATC 3 cut(s) 252, 606, 872
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 5 cut(s) 46, 137, 313, 630, 693
BstNI CCWGG 2 cut(s) 551, 656
BstSCI CCNGG 5 cut(s) 210, 374, 413, 549, 654
BstUI CGCG 7 cut(s) 218, 294, 301, 367, 381, 624, 629
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 3 cut(s) 20, 376, 394
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 5 cut(s) 204, 215, 236, 554, 683
BtgI CCRYGG 1 cut(s) 582
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 5 cut(s) 123, 162, 264, 495, 838
BtsIMutI CAGTG 1 cut(s) 344
BtuMI TCGCGA 1 cut(s) 294
Cac8I GCNNGC 4 cut(s) 365, 461, 631, 685
CaiI CAGNNNCTG 1 cut(s) 550
CciI TCATGA 1 cut(s) 789
CfoI GCGC 7 cut(s) 220, 318, 369, 381, 459, 624, 629
Cfr10I RCCGGY 2 cut(s) 459, 597
Cfr13I GGNCC 3 cut(s) 203, 393, 547
CseI GACGC 1 cut(s) 370
Csp6I GTAC 2 cut(s) 34, 595
CspAI ACCGGT 1 cut(s) 597
CviAII CATG 3 cut(s) 90, 508, 790
CviQI GTAC 2 cut(s) 34, 595
DinI GGCGCC 1 cut(s) 458
DpnI GATC 3 cut(s) 254, 608, 874
DpnII GATC 3 cut(s) 252, 606, 872
DraIII CACNNNGTG 1 cut(s) 303
EaeI YGGCCR 2 cut(s) 213, 552
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 3 cut(s) 119, 488, 843
EarI CTCTTC 3 cut(s) 119, 488, 843
EciI GGCGGA 3 cut(s) 167, 235, 268
EclXI CGGCCG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 393, 547
Eco52I CGGCCG 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 692
Eco72I CACGTG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 2 cut(s) 549, 654
EcoT38I GRGCYC 1 cut(s) 98
EgeI GGCGCC 1 cut(s) 458
EheI GGCGCC 1 cut(s) 458
FaeI CATG 3 cut(s) 93, 511, 793
FaiI YATR 7 cut(s) 11, 91, 509, 557, 673, 791, 801
FatI CATG 3 cut(s) 89, 507, 789
FauI CCCGC 2 cut(s) 136, 716
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 9 cut(s) 5, 181, 184, 197, 216, 282, 314, 625, 771
FokI GGATG 5 cut(s) 110, 149, 251, 482, 845
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 9 cut(s) 5, 181, 184, 197, 216, 282, 314, 625, 771
FspBI CTAG 1 cut(s) 910
GlaI GCGC 7 cut(s) 219, 317, 368, 380, 458, 623, 628
GluI GCNGC 9 cut(s) 5, 181, 184, 197, 216, 282, 314, 625, 771
GsuI CTGGAG 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 460
HaeIII GGCC 5 cut(s) 204, 215, 236, 554, 683
HapII CCGG 8 cut(s) 70, 191, 212, 375, 415, 454, 460, 598
HgaI GACGC 1 cut(s) 370
HhaI GCGC 7 cut(s) 220, 318, 369, 381, 459, 624, 629
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 3 cut(s) 93, 511, 793
Hin6I GCGC 7 cut(s) 218, 316, 367, 379, 457, 622, 627
HinP1I GCGC 7 cut(s) 218, 316, 367, 379, 457, 622, 627
HinfI GANTC 4 cut(s) 289, 465, 612, 884
HpaII CCGG 8 cut(s) 70, 191, 212, 375, 415, 454, 460, 598
HphI GGTGA 4 cut(s) 109, 160, 436, 658
Hpy166II GTNNAC 2 cut(s) 64, 589
Hpy188I TCNGA 1 cut(s) 611
Hpy188III TCNNGA 4 cut(s) 229, 293, 604, 790
Hpy8I GTNNAC 2 cut(s) 64, 589
Hpy99I CGWCG 3 cut(s) 146, 263, 695
HpyAV CCTTC 2 cut(s) 484, 523
HpyCH4III ACNGT 2 cut(s) 121, 448
HpyCH4IV ACGT 4 cut(s) 17, 101, 399, 690
HpyCH4V TGCA 3 cut(s) 4, 675, 729
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 137, 313, 630, 693
HpySE526I ACGT 4 cut(s) 17, 101, 399, 690
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 3 cut(s) 93, 511, 793
HspAI GCGC 7 cut(s) 218, 316, 367, 379, 457, 622, 627
KasI GGCGCC 1 cut(s) 456
KpnI GGTACC 1 cut(s) 598
KroI GCCGGC 1 cut(s) 459
KroNI GCCGGC 1 cut(s) 461
Kzo9I GATC 3 cut(s) 252, 606, 872
LmnI GCTCC 2 cut(s) 101, 348
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 910
MaeII ACGT 4 cut(s) 17, 101, 399, 690
MaeIII GTNAC 2 cut(s) 18, 148
MalI GATC 3 cut(s) 254, 608, 874
MbiI CCGCTC 1 cut(s) 199
MboI GATC 3 cut(s) 252, 606, 872
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 3 cut(s) 51, 98, 765
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 3 cut(s) 649, 735, 820
MluNI TGGCCA 1 cut(s) 554
Mly113I GGCGCC 1 cut(s) 457
MlyI GAGTC 3 cut(s) 459, 621, 893
Mox20I TGGCCA 1 cut(s) 554
MreI CGCCGGCG 1 cut(s) 459
MroNI GCCGGC 1 cut(s) 459
MscI TGGCCA 1 cut(s) 554
MseI TTAA 2 cut(s) 239, 900
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 554
MspI CCGG 8 cut(s) 70, 191, 212, 375, 415, 454, 460, 598
MspR9I CCNGG 5 cut(s) 212, 376, 415, 551, 656
MteI GCGCNGCGC 1 cut(s) 625
MvaI CCWGG 2 cut(s) 551, 656
MvnI CGCG 7 cut(s) 218, 294, 301, 367, 381, 624, 629
MwoI GCNNNNNNNGC 5 cut(s) 46, 137, 313, 630, 693
NaeI GCCGGC 1 cut(s) 461
NarI GGCGCC 1 cut(s) 457
NciI CCSGG 3 cut(s) 212, 376, 415
NdeII GATC 3 cut(s) 252, 606, 872
NgoMIV GCCGGC 1 cut(s) 459
NlaIII CATG 3 cut(s) 93, 511, 793
NlaIV GGNNCC 6 cut(s) 97, 195, 344, 419, 458, 596
NmeAIII GCCGAG 2 cut(s) 180, 339
NruI TCGCGA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 524
PagI TCATGA 1 cut(s) 789
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 867
PinAI ACCGGT 1 cut(s) 597
PkrI GCNGC 9 cut(s) 6, 182, 185, 198, 217, 283, 315, 626, 772
PleI GAGTC 3 cut(s) 459, 620, 892
PluTI GGCGCC 1 cut(s) 460
PmaCI CACGTG 1 cut(s) 102
PmlI CACGTG 1 cut(s) 102
PpsI GAGTC 3 cut(s) 459, 620, 892
Ppu21I YACGTR 1 cut(s) 102
PpuMI RGGWCCY 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 547
Psp6I CCWGG 2 cut(s) 549, 654
PspCI CACGTG 1 cut(s) 102
PspGI CCWGG 2 cut(s) 549, 654
PspN4I GGNNCC 6 cut(s) 97, 195, 344, 419, 458, 596
PspPI GGNCC 3 cut(s) 203, 393, 547
PspPPI RGGWCCY 1 cut(s) 547
PspXI VCTCGAGB 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 872
RruI TCGCGA 1 cut(s) 294
RsaI GTAC 2 cut(s) 35, 596
RsaNI GTAC 2 cut(s) 34, 595
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 2 cut(s) 239, 900
SatI GCNGC 9 cut(s) 5, 181, 184, 197, 216, 282, 314, 625, 771
Sau3AI GATC 3 cut(s) 252, 606, 872
Sau96I GGNCC 3 cut(s) 203, 393, 547
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 3 cut(s) 459, 621, 893
ScrFI CCNGG 5 cut(s) 212, 376, 415, 551, 656
SduI GDGCHC 3 cut(s) 51, 98, 765
SfaNI GCATC 1 cut(s) 273
SfoI GGCGCC 1 cut(s) 458
Sfr274I CTCGAG 1 cut(s) 524
SgrAI CRCCGGYG 1 cut(s) 459
SinI GGWCC 2 cut(s) 393, 547
SlaI CTCGAG 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 3 cut(s) 649, 735, 820
SspDI GGCGCC 1 cut(s) 456
SspMI CTAG 1 cut(s) 910
StyD4I CCNGG 5 cut(s) 210, 374, 413, 549, 654
TaaI ACNGT 2 cut(s) 121, 448
TaiI ACGT 4 cut(s) 20, 104, 402, 693
TaqI TCGA 1 cut(s) 525
TasI AATT 3 cut(s) 649, 735, 820
TatI WGTACW 1 cut(s) 33
TauI GCSGC 8 cut(s) 183, 186, 199, 218, 284, 316, 627, 773
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 239, 900
Tru9I TTAA 2 cut(s) 239, 900
TscAI CASTG 1 cut(s) 344
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 26, 496, 778, 806
TspGWI ACGGA 2 cut(s) 571, 747
TspRI CASTG 1 cut(s) 344
Van91I CCANNNNNTGG 1 cut(s) 867
VpaK11BI GGWCC 2 cut(s) 393, 547
XapI RAATTY 1 cut(s) 820
XhoI CTCGAG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 1 cut(s) 910
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.