Rroxscaffold_4G00329930

Protein of unknown function (DUF789)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
63296225 .. 63296984
760 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00329930.1

Sequence Viewer

Length: 354 bp
ATGATTTTGAAGCTTATTCAAACAGAGAATGGTAGGAGTACTGGTACTGGAGATATTGAGAATAGACTTCACAATCATCAAGTGTTAAGCGCATGCTGGAGTGGTGAGATATCCAGAAAATCTTCTAGTATTGGTAGTCTTCCAATATATTCACTACTTTTTTCTCATTTTGATTGCAAGGAAGATGCAGTCATCCCACCACTTGTAAACGAACTGGGTATTCCAGAAGCTTTTGCCAAAGACGTACCTGTTCAATCAGCTGATGACACAACAGGTTTCAGTGATTTAGAGCTACTTTTAGAATATTTTGAATATGAACAACCTCAACAAAGACGACCTCTATATGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

4.7

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 40, 46, 246
AgsI TTSAA 4 cut(s) 10, 20, 254, 311
AluBI AGCT 4 cut(s) 13, 230, 260, 292
AluI AGCT 4 cut(s) 13, 230, 260, 292
Asp700I GAANNNNTTC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 131
BfaI CTAG 1 cut(s) 126
BmcAI AGTACT 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 2 cut(s) 69, 118
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bse1I ACTGG 3 cut(s) 46, 52, 219
BseGI GGATG 1 cut(s) 192
BseNI ACTGG 3 cut(s) 46, 52, 219
BsrI ACTGG 3 cut(s) 46, 52, 219
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 39, 45, 245
CviAII CATG 1 cut(s) 93
CviJI RGCY 4 cut(s) 13, 230, 260, 292
CviKI_1 RGCY 4 cut(s) 13, 230, 260, 292
CviQI GTAC 3 cut(s) 39, 45, 245
Eco32I GATATC 1 cut(s) 111
EcoRV GATATC 1 cut(s) 111
FaeI CATG 1 cut(s) 96
FaiI YATR 5 cut(s) 94, 148, 315, 343, 345
FatI CATG 1 cut(s) 92
FokI GGATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 91
GsuI CTGGAG 2 cut(s) 69, 118
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 2 cut(s) 11, 228
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 114, 224
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 177, 188
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 27, 33, 82, 127, 200, 237, 258, 261
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 243
MboII GAAGA 3 cut(s) 114, 131, 194
MnlI CCTC 2 cut(s) 333, 348
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 260
NlaIII CATG 1 cut(s) 96
NspI RCATGY 1 cut(s) 96
PaeI GCATGC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 40, 46, 246
RsaNI GTAC 3 cut(s) 39, 45, 245
SaqAI TTAA 1 cut(s) 86
ScaI AGTACT 1 cut(s) 40
SetI ASST 9 cut(s) 15, 232, 246, 250, 262, 277, 294, 325, 340
SfaNI GCATC 1 cut(s) 175
SphI GCATGC 1 cut(s) 96
SspI AATATT 1 cut(s) 305
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 246
TatI WGTACW 1 cut(s) 38
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 286
XceI RCATGY 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.