RchiOBHm_Chr1g0318131

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002045
Physical Location & Seq
Forward (+)
5606833 .. 5608445
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54842

Sequence Viewer

Length: 1440 bp
ATGAAATTTGTTGTGCCTAACAAGAGAAGTAGACAAAACAAAGTAGGACAACGGAGTGCAAATGTTCCCAAATCTGGTAGTGTTGGGAATATGCGTACAGGGGTCTGGCAAAAGGTCCTGAAGAATGATGCCAATGATTGCACTGGTGAATTGAAGAAAGCAAGTTCTGTTTACTCAAGGCTTGATCTCCCTTTGAGAGAGGCTCCCATGCTCAATAAAACCTGTAATGCTGTTGATATTAATGTCTTTTTGAAGAGTGAAAATAGGAAACAGCAAAAAGATAAGGTCTCAAAAAAGTTGAAAAGAAAAAATGCTCCAGCATTGAAACGAGAATACAATTGTTATTCGAGGAAGGGATCTCATGCTAGCTTGGCTGGCTCAGATGGTTCTTTGAAGCTTCGGATGGATCAGAGTGATATATCAGATATCTTGTCTCAGGTGAAGGACAAGAAACCTAGTCGTCCAACGGCTCGATTCCAGAGCAGCAAAGTAGAATGCATGAACTCCGTATCAGTTCAAAGCATGCAGCTCTGTCCAAATGAGATTGGTCATCTTGAAAATGTGTGTAAAACCGTCTCAGGCATGAAGAATCAAAATGTAGGAAATCAGGATGGCTCAATGCAAAAAACATGCAATTCCTGGAAGGAACCAAGTCTGCTTCAGGTGCATTCTTCAATCTACCTTCCTCATCTACTTTATGATGCAGCAAGTCAAGAAGTACAGAGACAAATCCCTCTTGCAGAAAGCAGCAAGCAAAACTGGAGTAGTTCTGGATCTCTTACACACAAGTGGATGCCAATCGGGTTGAAGGACTCTGAGTTGGCAAGCTCTGCTAGATCTGAGAGTTCATTGCTTGAACATTCTGATGAGGGAGCTTCTAAGAGATGGACGATTAAAGACACTGTTAAAGGCAATGTGGTTTCTAAAGCTGCAGTTGAGTCCATGGCTCAGGGTTCTGGACATGTAATTCGTTCTTCTGATGACACAGAGGGCAGGCTTCCTACATCAAATGCAGTTGAAGAGGTGGCTGACAACAAGCTTCATGCAGCTAACTATGTGAATAGTTATGATGTATCCAAAGGTCTAAATGCTTTTGAAGCTTATTCAAACAGAGTATTAGAAGCAGTAAATAATGCTTGCAGGGCACAGCTGGCATCTGAAGCTGTTCAAATGACCACTGGTCATCCAATTGCCGAATTTGAAAGACTTCTGTATTATTCATCTCCCGTTATCCATCAATCACCTAGCCACACAAGTTGTCACACTTGCTGTTCATGGAACCAGGTTGACCAGGTTGGTGGTGTGTCATTGTGCAGACATGAGACACCAAATGTCACTTTAGGATGCCTATGGGAGTGGTATGAGAAATATGGGAGCTATGGGCTGGAAATAAGGGCTGAGGAACCTGGGAGTCCAAAGAGATTGGTGCTGATCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

479

Amino Acids

52.95

Weight (kDa)

9.1

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AclWI GGATC 3 cut(s) 364, 414, 781
AcsI RAATTY 2 cut(s) 5, 1196
AcuI CTGAAG 3 cut(s) 140, 644, 1179
AfaI GTAC 2 cut(s) 97, 720
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 961
AhdI GACNNNNNGTC 1 cut(s) 1179
AjnI CCWGG 4 cut(s) 638, 1281, 1290, 1405
AleI CACNNNNGTG 1 cut(s) 787
Alw26I GTCTC 5 cut(s) 292, 438, 580, 718, 1316
AlwI GGATC 3 cut(s) 364, 414, 781
ApeKI GCWGC 6 cut(s) 483, 526, 704, 747, 929, 1046
ApoI RAATTY 2 cut(s) 5, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 951, 983
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 2 cut(s) 1164, 1206
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 158, 451, 1233
AsuNHI GCTAGC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 1147
BbvCI CCTCAGC 1 cut(s) 1398
BbvI GCAGC 6 cut(s) 495, 538, 716, 759, 916, 1058
BccI CCATC 5 cut(s) 377, 397, 605, 879, 1242
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 4 cut(s) 640, 1283, 1292, 1407
BciVI GTATCC 1 cut(s) 1084
BcoDI GTCTC 5 cut(s) 292, 438, 580, 718, 1316
BfaI CTAG 4 cut(s) 366, 456, 834, 1245
BfmI CTRYAG 1 cut(s) 930
BfuI GTATCC 1 cut(s) 1084
BglII AGATCT 1 cut(s) 836
BisI GCNGC 6 cut(s) 484, 527, 705, 748, 930, 1047
BlsI GCNGC 6 cut(s) 485, 528, 706, 749, 931, 1048
Bme1390I CCNGG 4 cut(s) 640, 1283, 1292, 1407
Bme18I GGWCC 1 cut(s) 115
BmeRI GACNNNNNGTC 1 cut(s) 1179
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 4 cut(s) 204, 648, 1280, 1404
BmrFI CCNGG 4 cut(s) 640, 1283, 1292, 1407
BmsI GCATC 5 cut(s) 118, 691, 783, 1163, 1334
BmtI GCTAGC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 2 cut(s) 300, 781
Bpu10I CCTNAGC 2 cut(s) 948, 1398
BpuEI CTTGAG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 942, 1406
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 148, 764, 1183
Bse3DI GCAATG 2 cut(s) 848, 919
Bse8I GATNNNNATC 1 cut(s) 797
BseBI CCWGG 4 cut(s) 640, 1283, 1292, 1407
BseDI CCNNGG 2 cut(s) 942, 1406
BseGI GGATG 5 cut(s) 408, 616, 798, 1183, 1349
BseJI GATNNNNATC 1 cut(s) 797
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 848, 919
BseMII CTCAG 7 cut(s) 393, 449, 591, 807, 831, 962, 1389
BseNI ACTGG 3 cut(s) 148, 764, 1183
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 6 cut(s) 495, 538, 716, 759, 916, 1058
BsgI GTGCAG 1 cut(s) 1333
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 5 cut(s) 292, 438, 580, 718, 1316
BsmBI CGTCTC 1 cut(s) 580
BsmI GAATGC 2 cut(s) 500, 667
Bso31I GGTCTC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 1147
Bsp143I GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
Bsp19I CCATGG 1 cut(s) 942
BspCNI CTCAG 7 cut(s) 392, 448, 590, 808, 832, 961, 1390
BspLI GGNNCC 4 cut(s) 204, 648, 1280, 1404
BspMAI CTGCAG 1 cut(s) 934
BspOI GCTAGC 1 cut(s) 369
BspPI GGATC 3 cut(s) 364, 414, 781
BspTNI GGTCTC 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 848, 919
BsrI ACTGG 3 cut(s) 148, 764, 1183
BssECI CCNNGG 2 cut(s) 942, 1406
BssMI GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 4 cut(s) 640, 1283, 1292, 1407
Bst4CI ACNGT 2 cut(s) 574, 904
Bst6I CTCTTC 2 cut(s) 248, 1014
BstAPI GCANNNNNTGC 1 cut(s) 830
BstC8I GCNNGC 8 cut(s) 367, 376, 524, 752, 826, 995, 1138, 1152
BstDEI CTNAG 8 cut(s) 379, 435, 577, 816, 840, 879, 948, 1398
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 5 cut(s) 408, 616, 798, 1183, 1349
BstKTI GATC 6 cut(s) 187, 359, 409, 776, 839, 1434
BstMAI GTCTC 5 cut(s) 292, 438, 580, 718, 1316
BstMBI GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
BstMWI GCNNNNNNNGC 8 cut(s) 371, 375, 664, 830, 1097, 1142, 1151, 1160
BstNI CCWGG 4 cut(s) 640, 1283, 1292, 1407
BstNSI RCATGY 3 cut(s) 526, 633, 965
BstSCI CCNGG 4 cut(s) 638, 1281, 1290, 1405
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 1147
BstV1I GCAGC 6 cut(s) 495, 538, 716, 759, 916, 1058
BstX2I RGATCY 3 cut(s) 356, 773, 836
BstXI CCANNNNNNTGG 1 cut(s) 1298
BstYI RGATCY 3 cut(s) 356, 773, 836
BsuI GTATCC 1 cut(s) 1084
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 5 cut(s) 408, 616, 798, 1183, 1349
BtsIMutI CAGTG 3 cut(s) 141, 900, 1176
Cac8I GCNNGC 8 cut(s) 367, 376, 524, 752, 826, 995, 1138, 1152
Cfr13I GGNCC 1 cut(s) 115
CsiI ACCWGGT 2 cut(s) 1281, 1290
Csp6I GTAC 2 cut(s) 96, 719
CspCI CAANNNNNGTGG 2 cut(s) 1238, 1273
CviQI GTAC 2 cut(s) 96, 719
DdeI CTNAG 8 cut(s) 379, 435, 577, 816, 840, 879, 948, 1398
DpnI GATC 6 cut(s) 186, 358, 408, 775, 838, 1433
DpnII GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
DriI GACNNNNNGTC 1 cut(s) 1179
Eam1104I CTCTTC 2 cut(s) 248, 1014
Eam1105I GACNNNNNGTC 1 cut(s) 1179
EarI CTCTTC 2 cut(s) 248, 1014
Eco130I CCWWGG 1 cut(s) 942
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 3 cut(s) 140, 644, 1179
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 4 cut(s) 638, 1281, 1290, 1405
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 942
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 942
Esp3I CGTCTC 1 cut(s) 580
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 6 cut(s) 484, 527, 705, 748, 930, 1047
FokI GGATG 5 cut(s) 415, 623, 805, 1170, 1356
Fsp4HI GCNGC 6 cut(s) 484, 527, 705, 748, 930, 1047
FspBI CTAG 4 cut(s) 366, 456, 834, 1245
GluI GCNGC 6 cut(s) 484, 527, 705, 748, 930, 1047
GsuI CTGGAG 2 cut(s) 300, 781
HincII GTYRAC 1 cut(s) 1288
HindII GTYRAC 1 cut(s) 1288
HindIII AAGCTT 3 cut(s) 395, 1037, 1098
HinfI GANTC 5 cut(s) 474, 589, 812, 938, 1411
HphI GGTGA 3 cut(s) 158, 451, 1233
Hpy166II GTNNAC 3 cut(s) 32, 172, 1288
Hpy188I TCNGA 9 cut(s) 382, 402, 411, 424, 817, 841, 865, 979, 1159
Hpy188III TCNNGA 7 cut(s) 118, 478, 554, 608, 713, 771, 957
Hpy8I GTNNAC 3 cut(s) 32, 172, 1288
HpyAV CCTTC 5 cut(s) 346, 436, 637, 692, 802
HpyCH4III ACNGT 2 cut(s) 574, 904
HpyF10VI GCNNNNNNNGC 8 cut(s) 371, 375, 664, 830, 1097, 1142, 1151, 1160
HpyF3I CTNAG 8 cut(s) 379, 435, 577, 816, 840, 879, 948, 1398
Kzo9I GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
LmnI GCTCC 4 cut(s) 208, 319, 872, 1374
Lsp1109I GCAGC 6 cut(s) 495, 538, 716, 759, 916, 1058
LweI GCATC 5 cut(s) 118, 691, 783, 1163, 1334
MabI ACCWGGT 2 cut(s) 1281, 1290
MaeI CTAG 4 cut(s) 366, 456, 834, 1245
MaeIII GTNAC 2 cut(s) 1259, 1333
MalI GATC 6 cut(s) 186, 358, 408, 775, 838, 1433
MboI GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
MboII GAAGA 7 cut(s) 133, 166, 265, 598, 663, 966, 1031
MfeI CAATTG 2 cut(s) 337, 1188
MflI RGATCY 3 cut(s) 356, 773, 836
MhlI GDGCHC 1 cut(s) 1147
MluCI AATT 7 cut(s) 5, 149, 337, 634, 966, 1188, 1196
MlyI GAGTC 3 cut(s) 806, 947, 1420
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 8 cut(s) 193, 342, 696, 744, 862, 982, 1015, 1393
Mph1103I ATGCAT 1 cut(s) 500
MroXI GAANNNNTTC 2 cut(s) 1164, 1206
MseI TTAA 3 cut(s) 240, 894, 906
MslI CAYNNNNRTG 2 cut(s) 787, 864
MspA1I CMGCKG 1 cut(s) 1150
MspR9I CCNGG 4 cut(s) 640, 1283, 1292, 1407
MunI CAATTG 2 cut(s) 337, 1188
Mva1269I GAATGC 2 cut(s) 500, 667
MvaI CCWGG 4 cut(s) 640, 1283, 1292, 1407
MwoI GCNNNNNNNGC 8 cut(s) 371, 375, 664, 830, 1097, 1142, 1151, 1160
NcoI CCATGG 1 cut(s) 942
NdeII GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
NheI GCTAGC 1 cut(s) 365
NlaIV GGNNCC 4 cut(s) 204, 648, 1280, 1404
NmuCI GTSAC 2 cut(s) 1259, 1333
NsiI ATGCAT 1 cut(s) 500
NspI RCATGY 3 cut(s) 526, 633, 965
OliI CACNNNNGTG 1 cut(s) 787
PaeI GCATGC 1 cut(s) 526
PciI ACATGT 1 cut(s) 961
PctI GAATGC 2 cut(s) 500, 667
PdmI GAANNNNTTC 2 cut(s) 1164, 1206
PfeI GAWTC 2 cut(s) 474, 589
PfoI TCCNGGA 1 cut(s) 638
PkrI GCNGC 6 cut(s) 485, 528, 706, 749, 931, 1048
PleI GAGTC 3 cut(s) 806, 946, 1419
PpsI GAGTC 3 cut(s) 806, 946, 1419
PpuMI RGGWCCY 1 cut(s) 115
PscI ACATGT 1 cut(s) 961
PshBI ATTAAT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 4 cut(s) 638, 1281, 1290, 1405
PspGI CCWGG 4 cut(s) 638, 1281, 1290, 1405
PspN4I GGNNCC 4 cut(s) 204, 648, 1280, 1404
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 934
PsuI RGATCY 3 cut(s) 356, 773, 836
PvuII CAGCTG 1 cut(s) 1150
RsaI GTAC 2 cut(s) 97, 720
RsaNI GTAC 2 cut(s) 96, 719
RseI CAYNNNNRTG 2 cut(s) 787, 864
SaqAI TTAA 3 cut(s) 240, 894, 906
SatI GCNGC 6 cut(s) 484, 527, 705, 748, 930, 1047
Sau3AI GATC 6 cut(s) 184, 356, 406, 773, 836, 1431
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 3 cut(s) 806, 947, 1420
ScrFI CCNGG 4 cut(s) 640, 1283, 1292, 1407
SduI GDGCHC 1 cut(s) 1147
SexAI ACCWGGT 2 cut(s) 1281, 1290
SfaNI GCATC 5 cut(s) 118, 691, 783, 1163, 1334
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 787, 864
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
SphI GCATGC 1 cut(s) 526
Sse9I AATT 7 cut(s) 5, 149, 337, 634, 966, 1188, 1196
SspMI CTAG 4 cut(s) 366, 456, 834, 1245
StyD4I CCNGG 4 cut(s) 638, 1281, 1290, 1405
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 2 cut(s) 574, 904
TaqI TCGA 2 cut(s) 347, 472
TasI AATT 7 cut(s) 5, 149, 337, 634, 966, 1188, 1196
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 2 cut(s) 474, 589
Tru1I TTAA 3 cut(s) 240, 894, 906
Tru9I TTAA 3 cut(s) 240, 894, 906
TscAI CASTG 3 cut(s) 148, 907, 1183
TseFI GTSAC 2 cut(s) 1259, 1333
TseI GCWGC 6 cut(s) 483, 526, 704, 747, 929, 1046
Tsp45I GTSAC 2 cut(s) 1259, 1333
TspDTI ATGAA 7 cut(s) 17, 515, 599, 837, 1031, 1209, 1263
TspGWI ACGGA 2 cut(s) 67, 496
TspRI CASTG 3 cut(s) 148, 907, 1183
VpaK11BI GGWCC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 5, 1196
XceI RCATGY 3 cut(s) 526, 633, 965
XmiI GTMKAC 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 1164, 1206
XspI CTAG 4 cut(s) 366, 456, 834, 1245
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.