Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Reverse (-)

63483959 .. 63486500

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCTCAGGGTTCTGGACATGTAACTTGTTCTTCTGATGACACAGAGGGCAGGCTTCCCACATCAAATGCAGTTGAAGAGGTGGCCAACAACAAGCTTCATGCAGCTAACTATGTGAATAGTTATGATGTATCCAAAGGTCTAAATGCTTTTGAAGCTTATTCAAACAGAGTATTAGAAGCAGTAAATAATGCTTGTATGGCACAGCTGGCATCTGAAGCTGTTCAAATGACCACTGCTCATCCAATTGCCGAATTTGAAAGACTTCTACATAAGACACCAAATATCACTTTAGGATGCCTATGGGAGTGGTATGAGAAATATTGGAGCTATGGGCTGGAAATAAGGGCTGAGGAACCTGGGAGTCCAAAGAGATTGGGTGCTGATCGTTTAGCATTTCGTGCTTATTTTGTCCCTTATTTGTCAGGAATTCAGCTTTTCAGGAATGGTGGGAGTACTGGCACTGGAGATATTGACAATAGACTTCACAATCATCAAGTGTTAAGCGCATGCTGGAGTGGTGAGATATCCAGAATATCCTCTAGTATTGCTGACACAACAGGTTTCAGTGATTTAGAGCTACTTTTAGAATATTTTGAATATGAACAACCTCAACAAAGACGACCTCTATATGACAAGATAAAGGAGCTGGTTAGAGGTGATGGACATTCACATTCAAAAGTGTATGGCGATCCAACTACACTAGATTCTATAAATCTAAATGATCTACATCCCAGATCTTGGATACCTGATGGTAACTTCCGTGCAGCATTTTTGACCTACCATTCACTTGGTTGTCTGGTTCGTAGAAATGCCAACTTTGAGTCTCGTAGTGTGGAACTGTGGATGACTGTGTTGTATCTCCAGTTGTGGGTCTTCAGAGTTACAACGCTCAGAGCTGTTGTGAGCAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTACGAGTTCTTCCTCTCTAGGCGGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

325

Amino Acids

36.73

Weight (kDa)

6.27

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF789	PF05623	78 - 275	5.9e-30	Protein of unknown function (DUF789)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	741
AciI	CCGC	1 cut(s)	967
AclWI	GGATC	1 cut(s)	686
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	254, 429
AcuI	CTGAAG	2 cut(s)	237, 862
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	741, 871
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	7 cut(s)	77, 155, 165, 227, 260, 599, 678
AjnI	CCWGG	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	831
AlwI	GGATC	1 cut(s)	686
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	104, 767
ApoI	RAATTY	2 cut(s)	254, 429
Asp700I	GAANNNNTTC	2 cut(s)	222, 264
AspLEI	GCGC	2 cut(s)	509, 972
AsuHPI	GGTGA	2 cut(s)	533, 671
BalI	TGGCCA	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	868
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	116, 779
BccI	CCATC	2 cut(s)	656, 746
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	2 cut(s)	142, 738
BcoDI	GTCTC	1 cut(s)	831
BfaI	CTAG	4 cut(s)	543, 704, 963, 973
BfoI	RGCGCY	1 cut(s)	973
BfuI	GTATCC	2 cut(s)	142, 738
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	3 cut(s)	105, 768, 968
BlsI	GCNGC	3 cut(s)	106, 769, 969
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	221, 287, 946
BpiI	GAAGAC	1 cut(s)	868
BpmI	CTGGAG	3 cut(s)	486, 535, 848
Bpu10I	CCTNAGC	2 cut(s)	6, 351
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	2 cut(s)	741, 871
Bse1I	ACTGG	3 cut(s)	463, 469, 865
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	5 cut(s)	241, 302, 730, 852, 937
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	2 cut(s)	741, 871
BseMII	CTCAG	3 cut(s)	20, 342, 907
BseNI	ACTGG	3 cut(s)	463, 469, 865
BseXI	GCAGC	2 cut(s)	116, 779
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	741, 871
BsmAI	GTCTC	1 cut(s)	831
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	385, 691, 724, 737
BspACI	CCGC	1 cut(s)	967
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	19, 343, 906
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	463, 469, 865
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	4 cut(s)	385, 691, 724, 737
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	843, 853
Bst6I	CTCTTC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	53, 210, 511
BstDEI	CTNAG	3 cut(s)	6, 351, 893
BstF5I	GGATG	5 cut(s)	241, 302, 730, 852, 937
BstH2I	RGCGCY	1 cut(s)	973
BstHHI	GCGC	2 cut(s)	509, 972
BstKTI	GATC	4 cut(s)	388, 694, 727, 740
BstMAI	GTCTC	1 cut(s)	831
BstMBI	GATC	4 cut(s)	385, 691, 724, 737
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 200, 209, 218, 401
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	2 cut(s)	23, 513
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	116, 779
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	1 cut(s)	737
BstXI	CCANNNNNNTGG	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	737
BsuI	GTATCC	2 cut(s)	142, 738
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	5 cut(s)	241, 302, 730, 852, 937
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 462, 574
Cac8I	GCNNGC	3 cut(s)	53, 210, 511
CfoI	GCGC	2 cut(s)	509, 972
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	3 cut(s)	20, 101, 510
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	3 cut(s)	6, 351, 893
DpnI	GATC	4 cut(s)	387, 693, 726, 739
DpnII	GATC	4 cut(s)	385, 691, 724, 737
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	528
Eco57I	CTGAAG	2 cut(s)	237, 862
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	528
FaeI	CATG	3 cut(s)	23, 104, 513
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	19, 100, 509
Fnu4HI	GCNGC	3 cut(s)	105, 768, 968
FokI	GGATG	5 cut(s)	228, 309, 717, 859, 924
Fsp4HI	GCNGC	3 cut(s)	105, 768, 968
FspBI	CTAG	4 cut(s)	543, 704, 963, 973
GlaI	GCGC	2 cut(s)	508, 971
GluI	GCNGC	3 cut(s)	105, 768, 968
GsuI	CTGGAG	3 cut(s)	486, 535, 848
HaeII	RGCGCY	1 cut(s)	973
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	509, 972
Hin1II	CATG	3 cut(s)	23, 104, 513
Hin6I	GCGC	2 cut(s)	507, 970
HinP1I	GCGC	2 cut(s)	507, 970
HindIII	AAGCTT	2 cut(s)	95, 156
HinfI	GANTC	3 cut(s)	364, 707, 824
HphI	GGTGA	2 cut(s)	533, 671
Hpy166II	GTNNAC	1 cut(s)	931
Hpy188I	TCNGA	4 cut(s)	37, 217, 881, 896
Hpy188III	TCNNGA	5 cut(s)	15, 426, 442, 531, 941
Hpy8I	GTNNAC	1 cut(s)	931
HpyCH4III	ACNGT	2 cut(s)	843, 853
HpyCH4V	TGCA	3 cut(s)	71, 104, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 200, 209, 218, 401
HpyF3I	CTNAG	3 cut(s)	6, 351, 893
Hsp92II	CATG	3 cut(s)	23, 104, 513
HspAI	GCGC	2 cut(s)	507, 970
Kzo9I	GATC	4 cut(s)	385, 691, 724, 737
LmnI	GCTCC	2 cut(s)	327, 646
Lsp1109I	GCAGC	2 cut(s)	116, 779
LweI	GCATC	3 cut(s)	221, 287, 946
MaeI	CTAG	4 cut(s)	543, 704, 963, 973
MaeIII	GTNAC	3 cut(s)	22, 755, 883
MalI	GATC	4 cut(s)	387, 693, 726, 739
MboI	GATC	4 cut(s)	385, 691, 724, 737
MboII	GAAGA	4 cut(s)	24, 89, 868, 946
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	3 cut(s)	246, 254, 429
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	373, 833
MmeI	TCCRAC	1 cut(s)	719
MnlI	CCTC	8 cut(s)	40, 73, 346, 550, 621, 636, 650, 968
Mox20I	TGGCCA	1 cut(s)	86
MroXI	GAANNNNTTC	2 cut(s)	222, 264
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	5 cut(s)	155, 200, 209, 218, 401
NdeII	GATC	4 cut(s)	385, 691, 724, 737
NlaIII	CATG	3 cut(s)	23, 104, 513
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	2 cut(s)	23, 513
PaeI	GCATGC	1 cut(s)	513
PciI	ACATGT	1 cut(s)	19
PdmI	GAANNNNTTC	2 cut(s)	222, 264
PfeI	GAWTC	1 cut(s)	707
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	3 cut(s)	106, 769, 969
PleI	GAGTC	2 cut(s)	372, 832
PpsI	GAGTC	2 cut(s)	372, 832
PscI	ACATGT	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	737
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	3 cut(s)	105, 768, 968
Sau3AI	GATC	4 cut(s)	385, 691, 724, 737
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	2 cut(s)	373, 833
ScrFI	CCNGG	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	221, 287, 946
SphI	GCATGC	1 cut(s)	513
Sse9I	AATT	3 cut(s)	246, 254, 429
SsiI	CCGC	1 cut(s)	967
SspI	AATATT	2 cut(s)	323, 593
SspMI	CTAG	4 cut(s)	543, 704, 963, 973
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	843, 853
TasI	AATT	3 cut(s)	246, 254, 429
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	970
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	3 cut(s)	241, 469, 574
TseI	GCWGC	2 cut(s)	104, 767
TspDTI	ATGAA	2 cut(s)	89, 618
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	3 cut(s)	241, 469, 574
Van91I	CCANNNNNTGG	1 cut(s)	741
XapI	RAATTY	2 cut(s)	254, 429
XceI	RCATGY	2 cut(s)	23, 513
XmnI	GAANNNNTTC	2 cut(s)	222, 264
XspI	CTAG	4 cut(s)	543, 704, 963, 973
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.