Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011424.1

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Reverse (-)

23854 .. 24660

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011424.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgatgagggacgtatcgagctgcaacacgtacgattacggagacgcccaatactgggacacccgctacgtccaagaaggtgactccttattcgactggtaccagcgctactctgctctccgccctttcatccgcaacttcattcccctcacctcctctcctgttctcgtcgtcggctccggcaatgccggggtctggcaaaaggtcctgaagaatgatgccaatgattgcactggtgaattgaagaaagcaagttctgtttactcaaggcttgatctccctttgagagaggctcccatgctcaataaaacctgtaatgctgttgatattaatgtctttttgaagagtgaaaataggaaacagcaaaaagataaggtctcaaaaaagttgaaaagaaaaaatgctccagcattgaaacgagaatacaattgttattccaggaagggatctcatgctagcttggctggctcagatggttctttgaagcttcggatggatcagagtgatatatcagatatcttgtctcaggtgaaggacaaaaacctagtcgtccaacggctcgattccagagcagcaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

9.51

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	3 cut(s)	64, 121, 133
AclWI	GGATC	2 cut(s)	454, 504
AcuI	CTGAAG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	32, 101
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	54, 55, 195
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	244, 343, 391, 415, 484
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	3 cut(s)	21, 459, 487
AluI	AGCT	3 cut(s)	21, 459, 487
Alw26I	GTCTC	3 cut(s)	36, 382, 528
AlwI	GGATC	2 cut(s)	454, 504
Aor51HI	AGCGCT	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	21, 572
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 531, 563
AseI	ATTAAT	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	4 cut(s)	92, 142, 248, 541
AsuNHI	GCTAGC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	2 cut(s)	467, 487
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	36, 382, 528
BfaI	CTAG	2 cut(s)	456, 545
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	2 cut(s)	22, 573
BlsI	GCNGC	2 cut(s)	23, 574
Bme1390I	CCNGG	2 cut(s)	190, 439
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	3 cut(s)	101, 178, 294
BmrFI	CCNGG	2 cut(s)	190, 439
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	208
BmtI	GCTAGC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 55, 195
Bse1I	ACTGG	3 cut(s)	59, 101, 238
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	129, 498
BseLI	CCNNNNNNNGG	3 cut(s)	54, 55, 195
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	483, 539
BseNI	ACTGG	3 cut(s)	59, 101, 238
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	180, 189
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	23, 71
BslI	CCNNNNNNNGG	3 cut(s)	54, 55, 195
BsmAI	GTCTC	3 cut(s)	36, 382, 528
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	23, 71
Bso31I	GGTCTC	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	274, 446, 496
BspACI	CCGC	3 cut(s)	64, 121, 133
BspCNI	CTCAG	2 cut(s)	482, 538
BspLI	GGNNCC	3 cut(s)	101, 178, 294
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	454, 504
BspT107I	GGYRCC	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	59, 101, 238
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	274, 446, 496
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	457, 466
BstDEI	CTNAG	2 cut(s)	469, 525
BstF5I	GGATG	2 cut(s)	129, 498
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	3 cut(s)	277, 449, 499
BstMAI	GTCTC	3 cut(s)	36, 382, 528
BstMBI	GATC	3 cut(s)	274, 446, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 465
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	188, 437
BstV1I	GCAGC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	129, 498
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	457, 466
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	31, 100
CviAII	CATG	2 cut(s)	298, 452
CviJI	RGCY	9 cut(s)	21, 177, 271, 293, 459, 464, 468, 487, 559
CviKI_1	RGCY	9 cut(s)	21, 177, 271, 293, 459, 464, 468, 487, 559
CviQI	GTAC	2 cut(s)	31, 100
DdeI	CTNAG	2 cut(s)	469, 525
DpnI	GATC	3 cut(s)	276, 448, 498
DpnII	GATC	3 cut(s)	274, 446, 496
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	517
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	2 cut(s)	301, 455
FaiI	YATR	3 cut(s)	299, 453, 509
FaqI	GGGAC	2 cut(s)	23, 71
FatI	CATG	2 cut(s)	297, 451
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	22, 573
FokI	GGATG	2 cut(s)	116, 505
Fsp4HI	GCNGC	2 cut(s)	22, 573
FspBI	CTAG	2 cut(s)	456, 545
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	22, 573
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	109
HapII	CCGG	2 cut(s)	180, 189
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	301, 455
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	2 cut(s)	83, 563
HpaII	CCGG	2 cut(s)	180, 189
HphI	GGTGA	4 cut(s)	92, 142, 248, 541
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	4 cut(s)	472, 492, 501, 514
Hpy188III	TCNNGA	2 cut(s)	208, 567
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyAV	CCTTC	3 cut(s)	71, 436, 526
HpyCH4IV	ACGT	3 cut(s)	12, 29, 69
HpyCH4V	TGCA	2 cut(s)	24, 231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 465
HpyF3I	CTNAG	2 cut(s)	469, 525
HpySE526I	ACGT	3 cut(s)	12, 29, 69
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	301, 455
HspAI	GCGC	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	274, 446, 496
LmnI	GCTCC	3 cut(s)	182, 298, 409
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	456, 545
MaeII	ACGT	3 cut(s)	12, 29, 69
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	276, 448, 498
MboI	GATC	3 cut(s)	274, 446, 496
MboII	GAAGA	3 cut(s)	223, 256, 355
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	2 cut(s)	239, 427
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	4 cut(s)	158, 163, 166, 283
MseI	TTAA	1 cut(s)	330
MspI	CCGG	2 cut(s)	180, 189
MspR9I	CCNGG	2 cut(s)	190, 439
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	461, 465
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	3 cut(s)	274, 446, 496
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	2 cut(s)	301, 455
NlaIV	GGNNCC	3 cut(s)	101, 178, 294
NmuCI	GTSAC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	563
Pfl23II	CGTACG	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	23, 574
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	205
PshBI	ATTAAT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	101, 178, 294
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	2 cut(s)	32, 101
RsaNI	GTAC	2 cut(s)	31, 100
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	22, 573
Sau3AI	GATC	3 cut(s)	274, 446, 496
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	190, 439
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	239, 427
SsiI	CCGC	3 cut(s)	64, 121, 133
SspMI	CTAG	2 cut(s)	456, 545
StyD4I	CCNGG	2 cut(s)	188, 437
TaiI	ACGT	3 cut(s)	15, 32, 72
TaqI	TCGA	3 cut(s)	17, 93, 561
TasI	AATT	2 cut(s)	239, 427
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	21, 572
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	118, 130
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	330
XspI	CTAG	2 cut(s)	456, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.