Rmu_sc0011424.1_g000018

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011424.1
OG0002045
Physical Location & Seq
Reverse (-)
61382 .. 63843
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011424.1_g000018.1.cds

Sequence Viewer

Length: 1572 bp
atgatgagggacgtgtcgagctgcaacacgtacgattacggagacgcccaatactgggacgcccgctacgtccaagaaggtgactccttattcgactggtaccagcgctactctgctctccgccctttcatccgcaacttcattcccctcacctcctctcctgttctcgtcgtcggctccggcaatgccggggtctggcaaaaggtcctgaagaatgatgccaatgattgcactggtgaattgaagaaagcaagttctgtttactcaaggcttgatctccctttgagagaggctcccatgctcaataaaacctgtaatgctgttgatattaatgtctttttgaagagtgaaaataggaaacagcaaaaagataaggtctcaaaaaagttgaaaagaaaaaatgctccagcattgaaacgagaatacaattgttattccaggaagggatctcatgctagcttggctggctcagatggttctttgaagcttcggatggatcagagtgatatatcagatatcttgtctcaggtgaaggacaagaaacctagtcgtccaacggctcgattccagagcagcaaagtagaatgcatgaactccgtatcagttcaaagcatgcaactctgtccaaatgagattggtcatcttgaaaatgtgtgtaaaaccgtctcaggcatgaagaatcaaaatgtaggaaatcaggatggctcaatgcaaaaaacatgcaattcctggaaggaaccaagtctgcttcaggtgcaatcttcagtctaccttcctcatctactttatgatgcagcaagtcaagaagtacagagacaaatccctcttgcagaaagcagcaagcaaaactggagtagttctggatctcttacacacaagtggatgccaatcgggttgaaggactctgagttggcaagctctgctagatctgagagttcattgcttgaacattctgatgagggagcttctaagagatggacgattaaagacactgttaaaggcaatgtgatgatcttattctgttccctccctttcaggataaaggagctggttagaggtgatagacattcacattcaaaagtgtatggcgatccaactacaatagactctataaatctaaatgatctacatcccagatcttggtattcagtggcatggtatcctatttacaggatacctgatggtaacttccgtgcagcatttttgacctaccattcacttggttgtctggttcgtagaactgccaactttgagtctcgtagcatggatgaccgtattgtatctccagttgtgggtcttcagagttacaacgctcaggttgttaatggtacagagattgtgaaatattgtgcagtttattttaacatagtgaatgctggttccagtttaaggccctcagcaccagcacagacaacattatcaaacttaaacccttgtgaaatactggaggagcgtttgaggacacttgaggagacggcatctcttatgtcaagagctgttgtgagcaaaggaagtatgacatctgtaaacaggcatccagactacgagttcttcctctctaggcggcgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

523

Amino Acids

58.9

Weight (kDa)

9.21

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 1140
AccI GTMKAC 1 cut(s) 768
AciI CCGC 4 cut(s) 64, 121, 133, 1564
AclWI GGATC 4 cut(s) 454, 504, 871, 1085
AcuI CTGAAG 4 cut(s) 230, 734, 747, 1283
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 4 cut(s) 32, 101, 810, 1330
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 6 cut(s) 54, 55, 195, 1140, 1292, 1389
AflIII ACRYGT 2 cut(s) 12, 27
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 437, 728
AleI CACNNNNGTG 1 cut(s) 877
AluBI AGCT 7 cut(s) 21, 459, 487, 918, 965, 1048, 1496
AluI AGCT 7 cut(s) 21, 459, 487, 918, 965, 1048, 1496
Alw26I GTCTC 7 cut(s) 36, 382, 528, 670, 808, 1260, 1466
AlwI GGATC 4 cut(s) 454, 504, 871, 1085
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 1391
ApeKI GCWGC 5 cut(s) 21, 573, 794, 837, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AseI ATTAAT 1 cut(s) 330
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 205, 1392
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 5 cut(s) 92, 142, 248, 541, 1070
AsuNHI GCTAGC 1 cut(s) 455
AvaII GGWCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 1289
BbvCI CCTCAGC 1 cut(s) 1396
BbvI GCAGC 5 cut(s) 8, 585, 806, 849, 1208
BccI CCATC 5 cut(s) 467, 487, 695, 969, 1175
BceAI ACGGC 2 cut(s) 573, 1491
BciT130I CCWGG 2 cut(s) 439, 730
BciVI GTATCC 2 cut(s) 1167, 1170
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 7 cut(s) 36, 382, 528, 670, 808, 1260, 1466
BfaI CTAG 4 cut(s) 456, 546, 924, 1560
BfoI RGCGCY 1 cut(s) 109
BfuI GTATCC 2 cut(s) 1167, 1170
BglII AGATCT 2 cut(s) 926, 1136
BisI GCNGC 6 cut(s) 22, 574, 795, 838, 1197, 1565
BlsI GCNGC 6 cut(s) 23, 575, 796, 839, 1198, 1566
Bme1390I CCNGG 3 cut(s) 190, 439, 730
Bme18I GGWCC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 205, 1392
BmiI GGNNCC 5 cut(s) 101, 178, 294, 738, 1381
BmrFI CCNGG 3 cut(s) 190, 439, 730
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 5 cut(s) 208, 781, 873, 1487, 1543
BmtI GCTAGC 1 cut(s) 459
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 1289
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 4 cut(s) 390, 871, 1269, 1466
Bpu10I CCTNAGC 2 cut(s) 1314, 1396
BpuEI CTTGAG 2 cut(s) 250, 1487
BpuMI CCSGG 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 30
BsaBI GATNNNNATC 2 cut(s) 887, 1128
BsaHI GRCGYC 2 cut(s) 45, 60
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 55, 195, 1140, 1292, 1389
Bse1I ACTGG 7 cut(s) 59, 101, 238, 854, 1286, 1383, 1449
Bse3DI GCAATG 3 cut(s) 190, 938, 1009
Bse8I GATNNNNATC 2 cut(s) 887, 1128
BseBI CCWGG 2 cut(s) 439, 730
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 7 cut(s) 129, 498, 706, 888, 1129, 1273, 1534
BseJI GATNNNNATC 2 cut(s) 887, 1128
BseLI CCNNNNNNNGG 6 cut(s) 54, 55, 195, 1140, 1292, 1389
BseMI GCAATG 3 cut(s) 190, 938, 1009
BseMII CTCAG 7 cut(s) 483, 539, 681, 897, 921, 1328, 1410
BseNI ACTGG 7 cut(s) 59, 101, 238, 854, 1286, 1383, 1449
BseRI GAGGAG 3 cut(s) 145, 1463, 1484
BseXI GCAGC 5 cut(s) 8, 585, 806, 849, 1208
BsgI GTGCAG 2 cut(s) 1215, 1371
BshFI GGCC 1 cut(s) 1393
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 180, 189
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 6 cut(s) 54, 55, 195, 1140, 1292, 1389
BsmAI GTCTC 7 cut(s) 36, 382, 528, 670, 808, 1260, 1466
BsmBI CGTCTC 3 cut(s) 36, 670, 1466
BsmFI GGGAC 2 cut(s) 23, 71
BsmI GAATGC 2 cut(s) 590, 1378
BsnI GGCC 1 cut(s) 1393
Bso31I GGTCTC 1 cut(s) 382
Bsp143I GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
BspACI CCGC 4 cut(s) 64, 121, 133, 1564
BspANI GGCC 1 cut(s) 1393
BspCNI CTCAG 7 cut(s) 482, 538, 680, 898, 922, 1327, 1409
BspLI GGNNCC 5 cut(s) 101, 178, 294, 738, 1381
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 4 cut(s) 454, 504, 871, 1085
BspT107I GGYRCC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 3 cut(s) 190, 938, 1009
BsrI ACTGG 7 cut(s) 59, 101, 238, 854, 1286, 1383, 1449
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
BssNI GRCGYC 2 cut(s) 45, 60
Bst2UI CCWGG 2 cut(s) 439, 730
Bst4CI ACNGT 3 cut(s) 664, 994, 1274
Bst6I CTCTTC 1 cut(s) 338
BstACI GRCGYC 2 cut(s) 45, 60
BstAPI GCANNNNNTGC 1 cut(s) 920
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 6 cut(s) 64, 457, 466, 614, 842, 916
BstDEI CTNAG 8 cut(s) 469, 525, 667, 906, 930, 969, 1314, 1396
BstF5I GGATG 7 cut(s) 129, 498, 706, 888, 1129, 1273, 1534
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 9 cut(s) 277, 449, 499, 866, 929, 1014, 1093, 1126, 1139
BstMAI GTCTC 7 cut(s) 36, 382, 528, 670, 808, 1260, 1466
BstMBI GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
BstMWI GCNNNNNNNGC 4 cut(s) 461, 465, 754, 920
BstNI CCWGG 2 cut(s) 439, 730
BstNSI RCATGY 2 cut(s) 616, 723
BstSCI CCNGG 3 cut(s) 188, 437, 728
BstV1I GCAGC 5 cut(s) 8, 585, 806, 849, 1208
BstV2I GAAGAC 1 cut(s) 1289
BstX2I RGATCY 4 cut(s) 446, 863, 926, 1136
BstXI CCANNNNNNTGG 1 cut(s) 1220
BstYI RGATCY 4 cut(s) 446, 863, 926, 1136
BsuI GTATCC 2 cut(s) 1167, 1170
BsuRI GGCC 1 cut(s) 1393
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 7 cut(s) 129, 498, 706, 888, 1129, 1273, 1534
BtsIMutI CAGTG 3 cut(s) 231, 990, 1155
Cac8I GCNNGC 6 cut(s) 64, 457, 466, 614, 842, 916
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 205, 1392
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 4 cut(s) 31, 100, 809, 1329
CviAII CATG 8 cut(s) 298, 452, 589, 613, 673, 720, 1155, 1264
CviQI GTAC 4 cut(s) 31, 100, 809, 1329
DdeI CTNAG 8 cut(s) 469, 525, 667, 906, 930, 969, 1314, 1396
DpnI GATC 9 cut(s) 276, 448, 498, 865, 928, 1013, 1092, 1125, 1138
DpnII GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 107
Eco57I CTGAAG 4 cut(s) 230, 734, 747, 1283
EcoO109I RGGNCCY 2 cut(s) 205, 1392
EcoRII CCWGG 2 cut(s) 437, 728
EcoRV GATATC 1 cut(s) 517
EcoT22I ATGCAT 1 cut(s) 590
Esp3I CGTCTC 3 cut(s) 36, 670, 1466
FaeI CATG 8 cut(s) 301, 455, 592, 616, 676, 723, 1158, 1267
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 8 cut(s) 297, 451, 588, 612, 672, 719, 1154, 1263
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 6 cut(s) 22, 574, 795, 838, 1197, 1565
FokI GGATG 7 cut(s) 116, 505, 713, 895, 1116, 1280, 1521
Fsp4HI GCNGC 6 cut(s) 22, 574, 795, 838, 1197, 1565
FspBI CTAG 4 cut(s) 456, 546, 924, 1560
GlaI GCGC 1 cut(s) 107
GluI GCNGC 6 cut(s) 22, 574, 795, 838, 1197, 1565
GsuI CTGGAG 4 cut(s) 390, 871, 1269, 1466
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 1393
HapII CCGG 2 cut(s) 180, 189
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 8 cut(s) 301, 455, 592, 616, 676, 723, 1158, 1267
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 6 cut(s) 83, 564, 679, 902, 1106, 1253
HpaII CCGG 2 cut(s) 180, 189
HphI GGTGA 5 cut(s) 92, 142, 248, 541, 1070
Hpy166II GTNNAC 3 cut(s) 262, 769, 1528
Hpy188I TCNGA 8 cut(s) 472, 492, 501, 514, 907, 931, 955, 1302
Hpy188III TCNNGA 9 cut(s) 208, 568, 644, 698, 803, 861, 1036, 1491, 1538
Hpy8I GTNNAC 3 cut(s) 262, 769, 1528
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 6 cut(s) 71, 436, 526, 727, 782, 892
HpyCH4III ACNGT 3 cut(s) 664, 994, 1274
HpyCH4IV ACGT 3 cut(s) 12, 29, 69
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 465, 754, 920
HpyF3I CTNAG 8 cut(s) 469, 525, 667, 906, 930, 969, 1314, 1396
HpySE526I ACGT 3 cut(s) 12, 29, 69
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 8 cut(s) 301, 455, 592, 616, 676, 723, 1158, 1267
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 103
Kzo9I GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
LmnI GCTCC 6 cut(s) 182, 298, 409, 962, 1045, 1450
Lsp1109I GCAGC 5 cut(s) 8, 585, 806, 849, 1208
LweI GCATC 5 cut(s) 208, 781, 873, 1487, 1543
MaeI CTAG 4 cut(s) 456, 546, 924, 1560
MaeII ACGT 3 cut(s) 12, 29, 69
MaeIII GTNAC 3 cut(s) 80, 1184, 1304
MalI GATC 9 cut(s) 276, 448, 498, 865, 928, 1013, 1092, 1125, 1138
MboI GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
MboII GAAGA 7 cut(s) 223, 256, 355, 688, 753, 1289, 1543
MfeI CAATTG 1 cut(s) 427
MflI RGATCY 4 cut(s) 446, 863, 926, 1136
MluCI AATT 3 cut(s) 239, 427, 724
MlyI GAGTC 4 cut(s) 77, 896, 1100, 1262
MmeI TCCRAC 2 cut(s) 578, 1118
Mph1103I ATGCAT 1 cut(s) 590
MseI TTAA 7 cut(s) 330, 984, 996, 1323, 1362, 1388, 1427
MslI CAYNNNNRTG 2 cut(s) 877, 954
MspI CCGG 2 cut(s) 180, 189
MspR9I CCNGG 3 cut(s) 190, 439, 730
MunI CAATTG 1 cut(s) 427
Mva1269I GAATGC 2 cut(s) 590, 1378
MvaI CCWGG 2 cut(s) 439, 730
MwoI GCNNNNNNNGC 4 cut(s) 461, 465, 754, 920
NciI CCSGG 1 cut(s) 190
NdeII GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 8 cut(s) 301, 455, 592, 616, 676, 723, 1158, 1267
NlaIV GGNNCC 5 cut(s) 101, 178, 294, 738, 1381
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 590
NspI RCATGY 2 cut(s) 616, 723
OliI CACNNNNGTG 1 cut(s) 877
PaeI GCATGC 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 2 cut(s) 590, 1378
PfeI GAWTC 2 cut(s) 564, 679
Pfl23II CGTACG 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 1140
PfoI TCCNGGA 2 cut(s) 437, 728
PkrI GCNGC 6 cut(s) 23, 575, 796, 839, 1198, 1566
PleI GAGTC 4 cut(s) 77, 896, 1100, 1261
PpsI GAGTC 4 cut(s) 77, 896, 1100, 1261
Ppu21I YACGTR 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 2 cut(s) 437, 728
PspGI CCWGG 2 cut(s) 437, 728
PspLI CGTACG 1 cut(s) 30
PspN4I GGNNCC 5 cut(s) 101, 178, 294, 738, 1381
PspPI GGNCC 2 cut(s) 205, 1392
PspPPI RGGWCCY 1 cut(s) 205
PsuI RGATCY 4 cut(s) 446, 863, 926, 1136
RsaI GTAC 4 cut(s) 32, 101, 810, 1330
RsaNI GTAC 4 cut(s) 31, 100, 809, 1329
RseI CAYNNNNRTG 2 cut(s) 877, 954
SaqAI TTAA 7 cut(s) 330, 984, 996, 1323, 1362, 1388, 1427
SatI GCNGC 6 cut(s) 22, 574, 795, 838, 1197, 1565
Sau3AI GATC 9 cut(s) 274, 446, 496, 863, 926, 1011, 1090, 1123, 1136
Sau96I GGNCC 2 cut(s) 205, 1392
SchI GAGTC 4 cut(s) 77, 896, 1100, 1262
ScrFI CCNGG 3 cut(s) 190, 439, 730
SfaNI GCATC 5 cut(s) 208, 781, 873, 1487, 1543
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 877, 954
SmlI CTYRAG 2 cut(s) 265, 1466
SmoI CTYRAG 2 cut(s) 265, 1466
SphI GCATGC 1 cut(s) 616
Sse9I AATT 3 cut(s) 239, 427, 724
SsiI CCGC 4 cut(s) 64, 121, 133, 1564
SspI AATATT 1 cut(s) 1346
SspMI CTAG 4 cut(s) 456, 546, 924, 1560
StyD4I CCNGG 3 cut(s) 188, 437, 728
TaaI ACNGT 3 cut(s) 664, 994, 1274
TaiI ACGT 3 cut(s) 15, 32, 72
TaqI TCGA 3 cut(s) 17, 93, 562
TasI AATT 3 cut(s) 239, 427, 724
TatI WGTACW 1 cut(s) 808
TauI GCSGC 1 cut(s) 1567
TfiI GAWTC 2 cut(s) 564, 679
Tru1I TTAA 7 cut(s) 330, 984, 996, 1323, 1362, 1388, 1427
Tru9I TTAA 7 cut(s) 330, 984, 996, 1323, 1362, 1388, 1427
TscAI CASTG 3 cut(s) 238, 997, 1155
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 5 cut(s) 21, 573, 794, 837, 1196
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 118, 130, 605, 689, 927
TspGWI ACGGA 3 cut(s) 54, 586, 1181
TspRI CASTG 3 cut(s) 238, 997, 1155
Van91I CCANNNNNTGG 1 cut(s) 1140
VpaK11BI GGWCC 1 cut(s) 205
VspI ATTAAT 1 cut(s) 330
XceI RCATGY 2 cut(s) 616, 723
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 4 cut(s) 456, 546, 924, 1560
Zsp2I ATGCAT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.