Rroxscaffold_4G00329850

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002045
Physical Location & Seq
Reverse (-)
63218642 .. 63219479
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329850.1

Sequence Viewer

Length: 453 bp
ATGATCTTATTCTGTTCCCTCCCTTTCAGGATAAAGGAGCTGGTTAGAGGTGATGGACATTCACATTCAAAAGTGTATTCAGTGGCATGGTATCCTATTTACAGGATACCTGATGGTAACTACCGTGCAGCATTTTTGACCTACCATTCACTTGGTTGTCTGGTTCGTAGAAATGCCAACTTTGAGTCTCGTAGTGTGGATGACTGTATTGTATTTCCAGTTGTGGGTCTTCAGAGTTACAACGCTCAGAGTGAATGCTGGTTCCAGTTAAGGCCCTCAGCACCAGCACAGACAACATTATCAAACATAAACCCTTGTGAAATACTGGAGGAGCGTTTGAGGACACTTGAGGAGACATCATCTCTTATGTCAAGAGCTGTTGTGAGCAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTACGAGTTCTTCCTCTCTAGGCGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

150

Amino Acids

17.27

Weight (kDa)

8.91

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 26 - 145 1.7e-26 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 69
AluBI AGCT 2 cut(s) 40, 377
AluI AGCT 2 cut(s) 40, 377
Alw26I GTCTC 2 cut(s) 192, 347
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 47, 107
BciVI GTATCC 2 cut(s) 99, 102
BcoDI GTCTC 2 cut(s) 192, 347
BfaI CTAG 2 cut(s) 441, 451
BfoI RGCGCY 1 cut(s) 451
BfuI GTATCC 2 cut(s) 99, 102
BisI GCNGC 2 cut(s) 129, 446
BlsI GCNGC 2 cut(s) 130, 447
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 218, 265, 330
BseGI GGATG 2 cut(s) 205, 415
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 260, 291
BseNI ACTGG 3 cut(s) 218, 265, 330
BseRI GAGGAG 2 cut(s) 344, 365
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 2 cut(s) 192, 347
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 445
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 259, 290
BspLI GGNNCC 1 cut(s) 263
BsrI ACTGG 3 cut(s) 218, 265, 330
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 125, 206
BstDEI CTNAG 2 cut(s) 246, 277
BstF5I GGATG 2 cut(s) 205, 415
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 192, 347
BstMBI GATC 1 cut(s) 3
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuI GTATCC 2 cut(s) 99, 102
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 205, 415
BtsIMutI CAGTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 1 cut(s) 87
CviJI RGCY 3 cut(s) 40, 274, 377
CviKI_1 RGCY 3 cut(s) 40, 274, 377
DdeI CTNAG 2 cut(s) 246, 277
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 273
FaeI CATG 1 cut(s) 90
FaiI YATR 4 cut(s) 88, 308, 368, 398
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 129, 446
FokI GGATG 2 cut(s) 212, 402
Fsp4HI GCNGC 2 cut(s) 129, 446
FspBI CTAG 2 cut(s) 441, 451
GlaI GCGC 1 cut(s) 449
GluI GCNGC 2 cut(s) 129, 446
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 1 cut(s) 274
HhaI GCGC 1 cut(s) 450
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HinfI GANTC 1 cut(s) 185
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 234, 249
Hpy188III TCNNGA 3 cut(s) 28, 372, 419
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4III ACNGT 2 cut(s) 125, 206
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 246, 277
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 37, 331
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 441, 451
MaeIII GTNAC 2 cut(s) 116, 236
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 221, 424
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 7 cut(s) 29, 41, 286, 322, 333, 343, 446
MseI TTAA 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 260
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 263
PctI GAATGC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 130, 447
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 129, 446
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 194
SetI ASST 5 cut(s) 42, 52, 112, 143, 379
SfaNI GCATC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 1 cut(s) 445
SspMI CTAG 2 cut(s) 441, 451
TaaI ACNGT 2 cut(s) 125, 206
TauI GCSGC 1 cut(s) 448
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 87
TseI GCWGC 1 cut(s) 128
TspRI CASTG 1 cut(s) 87
XspI CTAG 2 cut(s) 441, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.