Rw1G002490

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002045
Physical Location & Seq
Forward (+)
4523764 .. 4528891
5128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002490.1

Sequence Viewer

Length: 306 bp
ATGATCTACATCCCAGATCTTGAAATGCCATCTTTGAGTCTCGTAGTGTGGATGACTGTATTGTATCTCCAGTTGTGGGTCTTCAGAGTTACAATGCTCAGAGTGAATGCTGGTTCCAGTTTAAGGCCCTCAGCACCAGCACAGACAACATTATCAAACTTAAACCCTTGTGAAATACTGGAGGAGCGTTTGAGGACACTTGAGGAGACGGCATCTCTTATGTCAAGAGCTGTTGTGAGCAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTACGAGTTCTTCCTCTCTAGGCGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

101

Amino Acids

11.62

Weight (kDa)

9.09

Isoelectric Point (pI)

64.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 76, 123
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 44, 200
AoxI GGCC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 44, 200
BfaI CTAG 2 cut(s) 294, 304
BfoI RGCGCY 1 cut(s) 304
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 2 cut(s) 221, 277
BpiI GAAGAC 1 cut(s) 73
BpmI CTGGAG 2 cut(s) 53, 200
Bpu10I CCTNAGC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 123
Bse1I ACTGG 3 cut(s) 70, 117, 183
Bse8I GATNNNNATC 1 cut(s) 8
BseGI GGATG 3 cut(s) 9, 57, 268
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 76, 123
BseMII CTCAG 2 cut(s) 112, 144
BseNI ACTGG 3 cut(s) 70, 117, 183
BseRI GAGGAG 2 cut(s) 197, 218
BshFI GGCC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 76, 123
BsmAI GTCTC 2 cut(s) 44, 200
BsmBI CGTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 3, 16
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 111, 143
BspLI GGNNCC 1 cut(s) 115
BsrI ACTGG 3 cut(s) 70, 117, 183
BssMI GATC 2 cut(s) 3, 16
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 98, 130
BstF5I GGATG 3 cut(s) 9, 57, 268
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 6, 19
BstMAI GTCTC 2 cut(s) 44, 200
BstMBI GATC 2 cut(s) 3, 16
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 127
BtsCI GGATG 3 cut(s) 9, 57, 268
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 126
CviJI RGCY 2 cut(s) 127, 230
CviKI_1 RGCY 2 cut(s) 127, 230
DdeI CTNAG 2 cut(s) 98, 130
DpnI GATC 2 cut(s) 5, 18
DpnII GATC 2 cut(s) 3, 16
Eco57I CTGAAG 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 200
FaiI YATR 2 cut(s) 221, 251
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 2 cut(s) 64, 255
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 2 cut(s) 294, 304
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 299
GsuI CTGGAG 2 cut(s) 53, 200
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 1 cut(s) 127
HhaI GCGC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 86, 101
Hpy188III TCNNGA 3 cut(s) 20, 225, 272
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 98, 130
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 3, 16
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 8 cut(s) 27, 83, 96, 130, 150, 164, 250, 285
LweI GCATC 2 cut(s) 221, 277
MaeI CTAG 2 cut(s) 294, 304
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 5, 18
MboI GATC 2 cut(s) 3, 16
MboII GAAGA 2 cut(s) 73, 277
MflI RGATCY 1 cut(s) 16
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 5 cut(s) 139, 175, 186, 196, 299
MseI TTAA 2 cut(s) 122, 161
Mva1269I GAATGC 1 cut(s) 112
NdeII GATC 2 cut(s) 3, 16
NlaIV GGNNCC 1 cut(s) 115
PctI GAATGC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 300
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 2 cut(s) 122, 161
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 2 cut(s) 3, 16
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 46
SetI ASST 1 cut(s) 232
SfaNI GCATC 2 cut(s) 221, 277
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 294, 304
TaaI ACNGT 1 cut(s) 58
TauI GCSGC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 122, 161
Tru9I TTAA 2 cut(s) 122, 161
XspI CTAG 2 cut(s) 294, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.