Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Reverse (-)

55056332 .. 55057969

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0407400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAAGTGGTTTTGGGGATTCAGCGAGCAGGCCATCCCAATCACAAGGGCCTTCTTTCTCCAGCAGTAACGGGGATGCTGGTAATTTCGAATGCAATATCTGCTTTGACTTAGCCCAAGACCCAATTGTTACCCTATGCGGCCATCTTTTCTGCTGGCCGTGCCTTTACAAATGGCTCCACATTCACTCCCATTCTCAGGAATGCCCTGTTTGCAAAGCCGTCGTGAAGGAGGAGAGTTTGGTCCCCTTGTATGGTAGGGGAAAGACATCTACTGACCCAAGATCAAAGTCAATTCCTGGAGTTAACATTCCGAATCGTCCAGCGGGGCAAAGGCCTGAAACAGCTCCTCCACCAGAACAAAACCATTTCGCCCAACGTGGGTTTGGATTCATGGGAGGTTTGGGAGGGTTTGCTCCACCAATGGCAACCACAACAAGGTTTGGCAATTTCACCTTCTCTGCAGCTTTTGGTGGCCTTTTCCCGTCTTTGTTAAATTTTCAGATGCATGGATTTCCTGACGCTCCCGTGTATGGTGCAAGTGCTGGATTTCCGCATGGGTTTCATAATACATTTCATGGCCCCCATGGACATAGATACAATTTGCGACCGGGTCCTCGTGTGGGTCGTCCAGCTGTGGTTCAAGATTATTACCTGAAGATGTTGATTATGTTTGTTGTAGCTTGTGCTCTTATGGCTCTTTTGTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

237

Amino Acids

25.73

Weight (kDa)

8.66

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	31 - 72	8.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	31 - 73	2.3e-08	Ring finger domain
zf-C3HC4_3	PF13920	31 - 77	8.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	31 - 73	1.3e-07	zinc-RING finger domain
zf-C3HC4	PF00097	32 - 72	6.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	32 - 70	2.2e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 326, 554
AcoI	YGGCCR	2 cut(s)	142, 158
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	677
AfiI	CCNNNNNNNGG	6 cut(s)	199, 254, 381, 438, 533, 623
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	4 cut(s)	347, 467, 635, 683
AluI	AGCT	4 cut(s)	347, 467, 635, 683
Alw21I	GWGCWC	1 cut(s)	691
AoxI	GGCC	7 cut(s)	32, 50, 142, 158, 335, 475, 580
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	496
AspS9I	GGNCC	4 cut(s)	50, 244, 581, 614
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	445
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	244, 614
BauI	CACGAG	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	43, 153
BceAI	ACGGC	2 cut(s)	145, 206
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	612
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	142, 465
BlsI	GCNGC	2 cut(s)	143, 466
Bme1390I	CCNGG	2 cut(s)	300, 612
Bme18I	GGWCC	2 cut(s)	244, 614
BmgT120I	GGNCC	4 cut(s)	50, 244, 581, 614
BmiI	GGNNCC	4 cut(s)	179, 246, 583, 615
BmrFI	CCNGG	2 cut(s)	300, 612
BmsI	GCATC	2 cut(s)	67, 495
BpmI	CTGGAG	2 cut(s)	46, 321
Bpu14I	TTCGAA	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	586
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 334, 364
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 254, 381, 438, 533, 623
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	35, 82
BseLI	CCNNNNNNNGG	6 cut(s)	199, 254, 381, 438, 533, 623
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	248, 339
BseXI	GCAGC	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	611
BshFI	GGCC	7 cut(s)	34, 52, 144, 160, 337, 477, 582
BsiEI	CGRYCG	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	6 cut(s)	199, 254, 381, 438, 533, 623
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	98, 209
BsnI	GGCC	7 cut(s)	34, 52, 144, 160, 337, 477, 582
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	3 cut(s)	141, 326, 554
BspANI	GGCC	7 cut(s)	34, 52, 144, 160, 337, 477, 582
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	179, 246, 583, 615
BspMAI	CTGCAG	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	1 cut(s)	284
BssSI	CACGAG	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	28, 32, 158
BstDEI	CTNAG	2 cut(s)	112, 198
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	35, 82
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMCI	CGRYCG	1 cut(s)	611
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 162, 213, 695
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	298, 610
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	476
BsuRI	GGCC	7 cut(s)	34, 52, 144, 160, 337, 477, 582
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	35, 82
Cac8I	GCNNGC	3 cut(s)	28, 32, 158
Cfr13I	GGNCC	4 cut(s)	50, 244, 581, 614
CseI	GACGC	1 cut(s)	530
CviAII	CATG	5 cut(s)	394, 509, 557, 578, 587
DdeI	CTNAG	2 cut(s)	112, 198
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	142, 158
Eco130I	CCWWGG	1 cut(s)	586
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	244, 614
Eco57I	CTGAAG	1 cut(s)	677
EcoO109I	RGGNCCY	2 cut(s)	50, 614
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	5 cut(s)	397, 512, 560, 581, 590
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	5 cut(s)	393, 508, 556, 577, 586
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	142, 465
FokI	GGATG	2 cut(s)	22, 89
Fsp4HI	GCNGC	2 cut(s)	142, 465
GluI	GCNGC	2 cut(s)	142, 465
GsuI	CTGGAG	2 cut(s)	46, 321
HaeIII	GGCC	7 cut(s)	34, 52, 144, 160, 337, 477, 582
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	397, 512, 560, 581, 590
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	20, 316, 390
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	315, 504
Hpy188III	TCNNGA	4 cut(s)	200, 226, 518, 644
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	63, 223, 466
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	5 cut(s)	96, 216, 464, 508, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 162, 213, 695
HpyF3I	CTNAG	2 cut(s)	112, 198
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	397, 512, 560, 581, 590
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	4 cut(s)	183, 352, 421, 529
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	2 cut(s)	67, 495
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	68, 130
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	670
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	6 cut(s)	85, 126, 294, 448, 496, 601
MnlI	CCTC	5 cut(s)	226, 360, 392, 401, 627
Mph1103I	ATGCAT	1 cut(s)	510
MseI	TTAA	2 cut(s)	306, 494
MspA1I	CMGCKG	2 cut(s)	326, 635
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	300, 612
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	2 cut(s)	98, 209
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	102, 162, 213, 695
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	586
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	397, 512, 560, 581, 590
NlaIV	GGNNCC	4 cut(s)	179, 246, 583, 615
NsiI	ATGCAT	1 cut(s)	510
NspV	TTCGAA	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	625
PctI	GAATGC	2 cut(s)	98, 209
PfeI	GAWTC	3 cut(s)	20, 316, 390
PflFI	GACNNNGTC	1 cut(s)	612
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	143, 466
PpuMI	RGGWCCY	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	4 cut(s)	179, 246, 583, 615
PspPI	GGNCC	4 cut(s)	50, 244, 581, 614
PspPPI	RGGWCCY	1 cut(s)	614
PstI	CTGCAG	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	306, 494
SatI	GCNGC	2 cut(s)	142, 465
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	4 cut(s)	50, 244, 581, 614
ScrFI	CCNGG	2 cut(s)	300, 612
SduI	GDGCHC	1 cut(s)	691
SetI	ASST	9 cut(s)	349, 382, 403, 443, 458, 469, 637, 657, 685
SfaNI	GCATC	2 cut(s)	67, 495
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	2 cut(s)	244, 614
Sse9I	AATT	6 cut(s)	85, 126, 294, 448, 496, 601
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	141, 326, 554
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	298, 610
StyI	CCWWGG	1 cut(s)	586
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	90
TasI	AATT	6 cut(s)	85, 126, 294, 448, 496, 601
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	3 cut(s)	20, 316, 390
Tru1I	TTAA	2 cut(s)	306, 494
Tru9I	TTAA	2 cut(s)	306, 494
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	382, 554, 566
Tth111I	GACNNNGTC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	244, 614
XapI	RAATTY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.