RLG00000030559

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002045
Physical Location & Seq
Reverse (-)
63493752 .. 63496104
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030559

Sequence Viewer

Length: 1344 bp
ATGATGAGGGACGTGTCGAGCTGCAACACTTACGATTACGGAGACGCCCAATACTGGGACGCCCGCTACGTCCAAGAAGGTGACTCCTTATTCGACTGGTACCAGCGCTACTCTGCTCTCCGCCCTTTCATCCGCAACTTCATTCCCCTCACCTCCTCTCCTGTTCTCGTCGTCGGCTCCGGCAATGCCGTTATGTCCGAGGATATGGCGAAAGATGGATATGAAGACATAATGAACATTGACATCTCATCAGTGGCTATCAACCTCATGAAGACCAGAAACAAGCACATCCCTCAGTTGAAATACAAGCAAATGGATGTGAGGCATATGAGCTTCTTCCCAGATGAATCCTTTGACGTGATTTCTGAGGAATATGGCAATGTAAGCTCAGCTTCTGAAACCTGTGGTAACAAGGACGAGGATGGACCAGCACCATCTTCAACTGCACCAGAAATTTCATTGCTAGATTCTAAGAATTCCAGTGATGAGCATACAAAGGCAAGCTGTTACAATGATCTCTATACCAAAGGTTACTCTGAGATGCATGACTCCTACGTTTTGGATTCAATTTCAATTGGCTCAAACAGTGATGGTAGTACTAATCTTGGTCATAATGAAAAACATACTGAGAAGGAAATGGGTCTGGCAAAGGTCCTGAAGAATGATGCCAATGATTGCACTGGAGAATTGAAGAAAGCAAGTTCTGTTTACTCAAGGCTTGATCTCCCTTTGAGAGAGGCTCCCATGCTCAATAAAACCTGTAATGCTGTTGATATTAATGTCTTTTTGAAGAGTGAAAATAGGAAACAGCAAAAAGATAAGGTCTCAAAAAAGTTGAAAAGAAAAAATGCTCCAGCATTGAAACGAGAATACAATTGTTATTCCAGGAAGGGATCTCATGCTAGCTTGGCTGGCTCAGATGGTTCTTTGAAGCTTCGGATTGATAAGAGTGATATATCAGATATCTTGTCTCAGGCGAAGGACAAGAAACCTAGTTGTCCAACGGCTGGATTCCAGAGCAGCAAAGTAGAATGCATGAACTCCGTATCAGTTCAAAGCATGCAACTCTGTCCAAATGAGATTGGTCATCTTGAAAATGTGTGTAAAACCGTCTCGGGCATGAAGAATCAAAATGTAGGAATCAGGATGGCTCAATGCAAAAAACATGCAATTCCTGGAAGGAACCAAGTCTGCTTCAGGTGCAATCTTCAGTCTACCTTCCTCATCTACTTTATGATGCAGCAAGTCAAGAAGTACAGAGACAAATCCCTCTTGCAGAAAGCAGCAAGCAAAACTGGAGTAGTTCTGGATCTCTTACACACAAGTGGGTGCCAATCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

448

Amino Acids

49.84

Weight (kDa)

8.38

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_25 PF13649 55 - 121 9.9e-08 Methyltransferase domain
Methyltransf_11 PF08241 57 - 121 7.6e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 99, 1329
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 1214
AciI CCGC 3 cut(s) 64, 121, 133
AclWI GGATC 2 cut(s) 901, 1317
AcsI RAATTY 2 cut(s) 453, 475
AcuI CTGAAG 3 cut(s) 677, 1180, 1193
AcyI GRCGYC 2 cut(s) 45, 60
AfaI GTAC 3 cut(s) 101, 598, 1256
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 54, 55, 1007
AflIII ACRYGT 1 cut(s) 12
AjiI CACGTC 2 cut(s) 13, 358
AjnI CCWGG 2 cut(s) 884, 1174
AleI CACNNNNGTG 1 cut(s) 1323
AluBI AGCT 7 cut(s) 21, 333, 387, 392, 504, 906, 934
AluI AGCT 7 cut(s) 21, 333, 387, 392, 504, 906, 934
Alw26I GTCTC 5 cut(s) 36, 829, 975, 1117, 1254
AlwI GGATC 2 cut(s) 901, 1317
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 1114
Aor51HI AGCGCT 1 cut(s) 107
ApeKI GCWGC 4 cut(s) 21, 1020, 1240, 1283
ApoI RAATTY 2 cut(s) 453, 475
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AseI ATTAAT 1 cut(s) 777
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 425, 652
AsuHPI GGTGA 2 cut(s) 92, 142
AsuNHI GCTAGC 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 1114
AvaII GGWCC 2 cut(s) 425, 652
BanI GGYRCC 2 cut(s) 99, 1329
BbsI GAAGAC 2 cut(s) 231, 278
BbvI GCAGC 4 cut(s) 8, 1032, 1252, 1295
BccI CCATC 6 cut(s) 209, 416, 442, 584, 914, 1141
BceAI ACGGC 2 cut(s) 173, 1020
BciT130I CCWGG 2 cut(s) 886, 1176
BcoDI GTCTC 5 cut(s) 36, 829, 975, 1117, 1254
BfaI CTAG 3 cut(s) 464, 903, 993
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 4 cut(s) 22, 1021, 1241, 1284
BlpI GCTNAGC 1 cut(s) 388
BlsI GCNGC 4 cut(s) 23, 1022, 1242, 1285
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 886, 1176
Bme18I GGWCC 2 cut(s) 425, 652
BmeT110I CYCGRG 1 cut(s) 1114
BmgBI CACGTC 2 cut(s) 13, 358
BmgT120I GGNCC 2 cut(s) 425, 652
BmiI GGNNCC 5 cut(s) 101, 178, 741, 1184, 1331
BmrFI CCNGG 2 cut(s) 886, 1176
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 3 cut(s) 531, 655, 1227
BmtI GCTAGC 1 cut(s) 906
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 231, 278
BplI GAGNNNNNCTC 2 cut(s) 724, 756
BpmI CTGGAG 3 cut(s) 702, 837, 1317
Bpu1102I GCTNAGC 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 697
BsaHI GRCGYC 2 cut(s) 45, 60
BsaI GGTCTC 1 cut(s) 829
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 55, 1007
Bse1I ACTGG 5 cut(s) 59, 101, 480, 685, 1300
Bse3DI GCAATG 3 cut(s) 190, 385, 458
BseBI CCWGG 2 cut(s) 886, 1176
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 5 cut(s) 129, 288, 322, 427, 1152
BseLI CCNNNNNNNGG 3 cut(s) 54, 55, 1007
BseMI GCAATG 3 cut(s) 190, 385, 458
BseMII CTCAG 7 cut(s) 308, 357, 402, 528, 618, 930, 986
BseNI ACTGG 5 cut(s) 59, 101, 480, 685, 1300
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 4 cut(s) 8, 1032, 1252, 1295
BsgI GTGCAG 1 cut(s) 429
BshNI GGYRCC 2 cut(s) 99, 1329
BsiHKCI CYCGRG 1 cut(s) 1114
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 23, 71
BslI CCNNNNNNNGG 3 cut(s) 54, 55, 1007
BsmAI GTCTC 5 cut(s) 36, 829, 975, 1117, 1254
BsmBI CGTCTC 2 cut(s) 36, 1117
BsmFI GGGAC 2 cut(s) 23, 71
BsmI GAATGC 1 cut(s) 1037
Bso31I GGTCTC 1 cut(s) 829
BsoBI CYCGRG 1 cut(s) 1114
Bsp143I GATC 4 cut(s) 514, 721, 893, 1309
Bsp1720I GCTNAGC 1 cut(s) 388
BspACI CCGC 3 cut(s) 64, 121, 133
BspCNI CTCAG 7 cut(s) 307, 358, 401, 529, 619, 929, 985
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 5 cut(s) 101, 178, 741, 1184, 1331
BspOI GCTAGC 1 cut(s) 906
BspPI GGATC 2 cut(s) 901, 1317
BspT107I GGYRCC 2 cut(s) 99, 1329
BspTNI GGTCTC 1 cut(s) 829
BsrDI GCAATG 3 cut(s) 190, 385, 458
BsrI ACTGG 5 cut(s) 59, 101, 480, 685, 1300
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 4 cut(s) 514, 721, 893, 1309
BssNI GRCGYC 2 cut(s) 45, 60
Bst2UI CCWGG 2 cut(s) 886, 1176
Bst4CI ACNGT 2 cut(s) 587, 1111
Bst6I CTCTTC 1 cut(s) 785
BstACI GRCGYC 2 cut(s) 45, 60
BstC8I GCNNGC 6 cut(s) 64, 502, 904, 913, 1061, 1288
BstDEI CTNAG 8 cut(s) 294, 366, 388, 471, 537, 627, 916, 972
BstF5I GGATG 5 cut(s) 129, 288, 322, 427, 1152
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 4 cut(s) 517, 724, 896, 1312
BstMAI GTCTC 5 cut(s) 36, 829, 975, 1117, 1254
BstMBI GATC 4 cut(s) 514, 721, 893, 1309
BstMWI GCNNNNNNNGC 4 cut(s) 384, 908, 912, 1200
BstNI CCWGG 2 cut(s) 886, 1176
BstNSI RCATGY 2 cut(s) 1063, 1169
BstSCI CCNGG 2 cut(s) 884, 1174
BstV1I GCAGC 4 cut(s) 8, 1032, 1252, 1295
BstV2I GAAGAC 2 cut(s) 231, 278
BstX2I RGATCY 2 cut(s) 893, 1309
BstYI RGATCY 2 cut(s) 893, 1309
BtrI CACGTC 2 cut(s) 13, 358
BtsCI GGATG 5 cut(s) 129, 288, 322, 427, 1152
BtsIMutI CAGTG 4 cut(s) 258, 487, 592, 678
Cac8I GCNNGC 6 cut(s) 64, 502, 904, 913, 1061, 1288
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 425, 652
CseI GACGC 2 cut(s) 53, 68
Csp6I GTAC 3 cut(s) 100, 597, 1255
CviAII CATG 8 cut(s) 268, 545, 745, 899, 1036, 1060, 1120, 1166
CviQI GTAC 3 cut(s) 100, 597, 1255
DdeI CTNAG 8 cut(s) 294, 366, 388, 471, 537, 627, 916, 972
DpnI GATC 4 cut(s) 516, 723, 895, 1311
DpnII GATC 4 cut(s) 514, 721, 893, 1309
Eam1104I CTCTTC 1 cut(s) 785
EarI CTCTTC 1 cut(s) 785
EciI GGCGGA 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 829
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 2 cut(s) 425, 652
Eco47III AGCGCT 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 677, 1180, 1193
Eco88I CYCGRG 1 cut(s) 1114
EcoO109I RGGNCCY 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 884, 1174
EcoRV GATATC 1 cut(s) 964
EcoT22I ATGCAT 2 cut(s) 546, 1037
Esp3I CGTCTC 2 cut(s) 36, 1117
FaeI CATG 8 cut(s) 271, 548, 748, 902, 1039, 1063, 1123, 1169
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 2 cut(s) 23, 71
FatI CATG 8 cut(s) 267, 544, 744, 898, 1035, 1059, 1119, 1165
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 1214
Fnu4HI GCNGC 4 cut(s) 22, 1021, 1241, 1284
FokI GGATG 5 cut(s) 116, 275, 329, 434, 1159
Fsp4HI GCNGC 4 cut(s) 22, 1021, 1241, 1284
FspBI CTAG 3 cut(s) 464, 903, 993
GlaI GCGC 1 cut(s) 107
GluI GCNGC 4 cut(s) 22, 1021, 1241, 1284
GsuI CTGGAG 3 cut(s) 702, 837, 1317
HaeII RGCGCY 1 cut(s) 109
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 53, 68
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 2 cut(s) 45, 60
Hin1II CATG 8 cut(s) 271, 548, 748, 902, 1039, 1063, 1123, 1169
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 8 cut(s) 83, 347, 467, 548, 563, 1011, 1126, 1140
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 92, 142
Hpy166II GTNNAC 2 cut(s) 709, 1215
Hpy188I TCNGA 7 cut(s) 199, 367, 397, 538, 919, 939, 961
Hpy188III TCNNGA 7 cut(s) 268, 655, 1015, 1091, 1144, 1249, 1307
Hpy8I GTNNAC 2 cut(s) 709, 1215
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 6 cut(s) 71, 625, 883, 973, 1173, 1228
HpyCH4III ACNGT 2 cut(s) 587, 1111
HpyCH4IV ACGT 4 cut(s) 12, 69, 357, 555
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 908, 912, 1200
HpyF3I CTNAG 8 cut(s) 294, 366, 388, 471, 537, 627, 916, 972
HpySE526I ACGT 4 cut(s) 12, 69, 357, 555
Hsp92I GRCGYC 2 cut(s) 45, 60
Hsp92II CATG 8 cut(s) 271, 548, 748, 902, 1039, 1063, 1123, 1169
HspAI GCGC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 103
Kzo9I GATC 4 cut(s) 514, 721, 893, 1309
LmnI GCTCC 3 cut(s) 182, 745, 856
Lsp1109I GCAGC 4 cut(s) 8, 1032, 1252, 1295
LweI GCATC 3 cut(s) 531, 655, 1227
MaeI CTAG 3 cut(s) 464, 903, 993
MaeII ACGT 4 cut(s) 12, 69, 357, 555
MaeIII GTNAC 4 cut(s) 80, 407, 506, 530
MalI GATC 4 cut(s) 516, 723, 895, 1311
MboI GATC 4 cut(s) 514, 721, 893, 1309
MboII GAAGA 9 cut(s) 236, 283, 328, 429, 670, 703, 802, 1135, 1199
MfeI CAATTG 2 cut(s) 573, 874
MflI RGATCY 2 cut(s) 893, 1309
MluCI AATT 7 cut(s) 453, 475, 567, 573, 686, 874, 1170
MlyI GAGTC 2 cut(s) 77, 542
MmeI TCCRAC 1 cut(s) 1025
Mph1103I ATGCAT 2 cut(s) 546, 1037
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 1323
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 886, 1176
MunI CAATTG 2 cut(s) 573, 874
Mva1269I GAATGC 1 cut(s) 1037
MvaI CCWGG 2 cut(s) 886, 1176
MwoI GCNNNNNNNGC 4 cut(s) 384, 908, 912, 1200
NdeI CATATG 1 cut(s) 327
NdeII GATC 4 cut(s) 514, 721, 893, 1309
NheI GCTAGC 1 cut(s) 902
NlaIII CATG 8 cut(s) 271, 548, 748, 902, 1039, 1063, 1123, 1169
NlaIV GGNNCC 5 cut(s) 101, 178, 741, 1184, 1331
NmuCI GTSAC 1 cut(s) 80
NsiI ATGCAT 2 cut(s) 546, 1037
NspI RCATGY 2 cut(s) 1063, 1169
OliI CACNNNNGTG 1 cut(s) 1323
PaeI GCATGC 1 cut(s) 1063
PagI TCATGA 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 1037
PfeI GAWTC 6 cut(s) 347, 467, 563, 1011, 1126, 1140
PflMI CCANNNNNTGG 1 cut(s) 1007
PfoI TCCNGGA 2 cut(s) 884, 1174
PkrI GCNGC 4 cut(s) 23, 1022, 1242, 1285
PleI GAGTC 2 cut(s) 77, 542
PpsI GAGTC 2 cut(s) 77, 542
PpuMI RGGWCCY 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 884, 1174
PspGI CCWGG 2 cut(s) 884, 1174
PspN4I GGNNCC 5 cut(s) 101, 178, 741, 1184, 1331
PspPI GGNCC 2 cut(s) 425, 652
PspPPI RGGWCCY 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 893, 1309
RsaI GTAC 3 cut(s) 101, 598, 1256
RsaNI GTAC 3 cut(s) 100, 597, 1255
RseI CAYNNNNRTG 1 cut(s) 1323
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 4 cut(s) 22, 1021, 1241, 1284
Sau3AI GATC 4 cut(s) 514, 721, 893, 1309
Sau96I GGNCC 2 cut(s) 425, 652
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 2 cut(s) 77, 542
ScrFI CCNGG 2 cut(s) 886, 1176
SfaNI GCATC 3 cut(s) 531, 655, 1227
SinI GGWCC 2 cut(s) 425, 652
SmiMI CAYNNNNRTG 1 cut(s) 1323
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
SphI GCATGC 1 cut(s) 1063
Sse9I AATT 7 cut(s) 453, 475, 567, 573, 686, 874, 1170
SsiI CCGC 3 cut(s) 64, 121, 133
SspMI CTAG 3 cut(s) 464, 903, 993
StyD4I CCNGG 2 cut(s) 884, 1174
TaaI ACNGT 2 cut(s) 587, 1111
TaiI ACGT 4 cut(s) 15, 72, 360, 558
TaqI TCGA 2 cut(s) 17, 93
TasI AATT 7 cut(s) 453, 475, 567, 573, 686, 874, 1170
TatI WGTACW 2 cut(s) 596, 1254
TfiI GAWTC 6 cut(s) 347, 467, 563, 1011, 1126, 1140
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 4 cut(s) 258, 487, 592, 685
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 21, 1020, 1240, 1283
Tsp45I GTSAC 1 cut(s) 80
TspGWI ACGGA 2 cut(s) 54, 1033
TspRI CASTG 4 cut(s) 258, 487, 592, 685
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 2 cut(s) 425, 652
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 2 cut(s) 453, 475
XceI RCATGY 2 cut(s) 1063, 1169
XmiI GTMKAC 1 cut(s) 1214
XspI CTAG 3 cut(s) 464, 903, 993
ZrmI AGTACT 1 cut(s) 598
Zsp2I ATGCAT 2 cut(s) 546, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.