Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002045

Physical Location & Seq

Genomic Coordinates Reverse (-)

63196297 .. 63198612

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTCAGGGTTCTGGACATGTAACTCGTTCTTCTGATGACACAGAGGGCAGGCTTCCTACATCAAATGCAGTTGAAGAGGTGGCCAACAACAAGCTTCATGCAGCTAACTATGTGAATAGTTCTGATGTATCCAAAGGTCTAAATGCTTTTGAAGCTTATTCAAACAGAGTATTAGAAGCAGTAAATAATGCTTGTAGGGCACAGCTGGCATCTGAAGCTGTTCAAATGACCACTGGATGCCTATGGGAGTGGTATGAGAAATATGGGAGCTATGGGCTGGAAATAAGGGCTGAGGAACCTGGGAGTCCAAAGAAATTGGGTGCTGATCGTTTAGCATTTCGTGCTTATTTTGTCCCTTATTTGTCAGGAATTCAGCTTTTCAGGAATGGTAGGAGTACTGGTACTGGAGATATTGACAATAGACTTCACAATCATCAAGTGTTAAGCGCATGCTGGAGTGGTGAGATATCCAGAAAATCCTCTAGTATTGGTAGTCTTCCAATATATTCACTACTTTTTTCTCATCTTGATTGCAAGGAAGATGCAGTCATCCCACCACTTGTAAACGAACTGGGTATTCCAGAAGCTTTTGCCAAAGATGCACCTGTTCAATCAGCTGACACAACAGGTTTCAGTGATTTAGAGCAACTTTTAGAATATTTTGAATATGAACAACCTCAACAAAGACGACCTCTATATGACAAGATACCTGATGGCTTCCGTGCAGCATTTTTGACCTACCATTCACTTGGTTGTCTGGTTCGTAGAAATGCCATCTTTGAGTCTCGTAGCGTGGATGACTATATTTTATCTCCAGTTGTGGGTCTTCAGAGTTACAATACTCAGCACCAGCACAGACAACATTATCAAACTAACCCTTGTGAAATACTGGAGGAGCGTTTCAGGACACTTGAGGAGACGGCATCTCTTATGTCAAGAGCTGTTGTGAGCAAAGGAAGTATGACATCTGTAAACAGGCATCCAGACTACGAGTTCTTCCTCTCTAGGCGGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF789

Protein Analysis

339

Amino Acids

38.11

Weight (kDa)

5.84

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF789	PF05623	75 - 237	2.9e-18	Protein of unknown function (DUF789)
DUF789	PF05623	240 - 334	3.9e-12	Protein of unknown function (DUF789)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002045)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g18040 FvH4_5g18461
malus_domestica	MD06G1235900.v1.1 MD14G1242900.v1.1
prunus_persica	Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1 Prupe.5G240600_v2.0.a1
pyrus_communis	pycom06g21090 pycom14g20420
rosa_chinensis	RchiOBHm_Chr1g0318131 RchiOBHm_Chr1g0318141 RchiOBHm_Chr3g0480291 RchiOBHm_Chr7g0177561
rosa_laevigata	RLG00000005526 RLG00000030558 RLG00000030559
rosa_multiflora	Rmu_sc0011424.1_g000007 Rmu_sc0011424.1_g000018 Rmu_ssc0000330.1_g000012
rosa_roxburghii	Rroxscaffold_3G00275750 Rroxscaffold_4G00329770 Rroxscaffold_4G00329820 Rroxscaffold_4G00329850 Rroxscaffold_4G00329880 Rroxscaffold_4G00329930
rosa_rugosa	Rorug06G0407400 Rorug06G0407500 Rorug06G0407600 Rorug07G0197000
rosa_samantha	Rh1AG031000 Rh1CG029800 Rh4DG125000 Rh7AG006700 Rh7BG006600 Rh7CG007100 Rh7DG006700
rosa_wichuraiana	Rw1G002490 Rw7G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1012
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	2 cut(s)	237, 815
AfaI	GTAC	2 cut(s)	400, 406
AfiI	CCNNNNNNNGG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	6 cut(s)	77, 155, 165, 227, 614, 668
AjnI	CCWGG	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	792, 914
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	104, 728
ApoI	RAATTY	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	452, 1017
AsuHPI	GGTGA	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	491, 821
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	116, 740
BccI	CCATC	2 cut(s)	710, 785
BceAI	ACGGC	1 cut(s)	939
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	792, 914
BfaI	CTAG	3 cut(s)	486, 1008, 1018
BfoI	RGCGCY	1 cut(s)	1018
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	3 cut(s)	105, 729, 1013
BlsI	GCNGC	3 cut(s)	106, 730, 1014
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	6 cut(s)	221, 230, 535, 592, 935, 991
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	491, 821
BpmI	CTGGAG	4 cut(s)	429, 478, 801, 914
Bpu10I	CCTNAGC	2 cut(s)	6, 294
BpuEI	CTTGAG	1 cut(s)	935
BsaJI	CCNNGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse1I	ACTGG	6 cut(s)	241, 406, 412, 579, 818, 897
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	4 cut(s)	245, 552, 805, 982
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMII	CTCAG	3 cut(s)	20, 285, 860
BseNI	ACTGG	6 cut(s)	241, 406, 412, 579, 818, 897
BseRI	GAGGAG	2 cut(s)	911, 932
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	116, 740
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	792, 914
BsmBI	CGTCTC	1 cut(s)	914
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	1012
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	19, 286, 859
BspLI	GGNNCC	1 cut(s)	300
BsrI	ACTGG	6 cut(s)	241, 406, 412, 579, 818, 897
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	53, 210, 454
BstDEI	CTNAG	3 cut(s)	6, 294, 846
BstF5I	GGATG	4 cut(s)	245, 552, 805, 982
BstH2I	RGCGCY	1 cut(s)	1018
BstHHI	GCGC	2 cut(s)	452, 1017
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	792, 914
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 200, 209, 218, 344, 602
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	2 cut(s)	23, 456
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	116, 740
BstV2I	GAAGAC	2 cut(s)	491, 821
BstXI	CCANNNNNNTGG	1 cut(s)	752
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	4 cut(s)	245, 552, 805, 982
BtsIMutI	CAGTG	2 cut(s)	234, 643
Cac8I	GCNNGC	3 cut(s)	53, 210, 454
CfoI	GCGC	2 cut(s)	452, 1017
Csp6I	GTAC	2 cut(s)	399, 405
CviAII	CATG	3 cut(s)	20, 101, 453
CviQI	GTAC	2 cut(s)	399, 405
DdeI	CTNAG	3 cut(s)	6, 294, 846
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	471
Eco57I	CTGAAG	2 cut(s)	237, 815
EcoRI	GAATTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	914
FaeI	CATG	3 cut(s)	23, 104, 456
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	19, 100, 452
Fnu4HI	GCNGC	3 cut(s)	105, 729, 1013
FokI	GGATG	4 cut(s)	252, 539, 812, 969
Fsp4HI	GCNGC	3 cut(s)	105, 729, 1013
FspBI	CTAG	3 cut(s)	486, 1008, 1018
GlaI	GCGC	2 cut(s)	451, 1016
GluI	GCNGC	3 cut(s)	105, 729, 1013
GsuI	CTGGAG	4 cut(s)	429, 478, 801, 914
HaeII	RGCGCY	1 cut(s)	1018
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	452, 1017
Hin1II	CATG	3 cut(s)	23, 104, 456
Hin6I	GCGC	2 cut(s)	450, 1015
HinP1I	GCGC	2 cut(s)	450, 1015
HindIII	AAGCTT	3 cut(s)	95, 156, 588
HinfI	GANTC	2 cut(s)	307, 785
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	568, 976
Hpy188I	TCNGA	4 cut(s)	37, 127, 217, 834
Hpy188III	TCNNGA	9 cut(s)	15, 369, 385, 474, 530, 584, 907, 939, 986
Hpy8I	GTNNAC	2 cut(s)	568, 976
HpyCH4V	TGCA	6 cut(s)	71, 104, 537, 548, 605, 728
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 200, 209, 218, 344, 602
HpyF3I	CTNAG	3 cut(s)	6, 294, 846
Hsp92II	CATG	3 cut(s)	23, 104, 456
HspAI	GCGC	2 cut(s)	450, 1015
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	270, 898
Lsp1109I	GCAGC	2 cut(s)	116, 740
LweI	GCATC	6 cut(s)	221, 230, 535, 592, 935, 991
MaeI	CTAG	3 cut(s)	486, 1008, 1018
MaeIII	GTNAC	2 cut(s)	22, 836
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	24, 89, 491, 554, 821, 991
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	2 cut(s)	317, 372
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	316, 794
MnlI	CCTC	9 cut(s)	40, 73, 289, 493, 690, 705, 889, 910, 1013
Mox20I	TGGCCA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	208, 620
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	6 cut(s)	155, 200, 209, 218, 344, 602
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	23, 104, 456
NlaIV	GGNNCC	1 cut(s)	300
NspI	RCATGY	2 cut(s)	23, 456
PaeI	GCATGC	1 cut(s)	456
PciI	ACATGT	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	106, 730, 1014
PleI	GAGTC	2 cut(s)	315, 793
PpsI	GAGTC	2 cut(s)	315, 793
PscI	ACATGT	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	300
PvuII	CAGCTG	2 cut(s)	208, 620
RsaI	GTAC	2 cut(s)	400, 406
RsaNI	GTAC	2 cut(s)	399, 405
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	3 cut(s)	105, 729, 1013
Sau3AI	GATC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	2 cut(s)	316, 794
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	6 cut(s)	221, 230, 535, 592, 935, 991
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SphI	GCATGC	1 cut(s)	456
Sse9I	AATT	2 cut(s)	317, 372
SsiI	CCGC	1 cut(s)	1012
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	3 cut(s)	486, 1008, 1018
StyD4I	CCNGG	1 cut(s)	301
TasI	AATT	2 cut(s)	317, 372
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	1 cut(s)	1015
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	241, 643
TseI	GCWGC	2 cut(s)	104, 728
TspDTI	ATGAA	2 cut(s)	89, 687
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	241, 643
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	2 cut(s)	23, 456
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	3 cut(s)	486, 1008, 1018
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.