Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

18302790 .. 18303294

Gene Structure 505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCCCCAGGCTCAACAATGTTTCCCTTGTACTCAAGGAAACTCTTGATTACAAGGTTGAACTTCCTAATCTTCAAACTCTTATTTGTATGGAATTTGTTCCCCCTAGTTACAACGTCAACCTTGGAGAAGTTTGTTGTTGTAATGTGAAGAAGTTGAGTGTTTGCGCTCCTCCGAATGAGGTCATCAGTACCAACCAATATCTTGAGAAGCTAATATCCAAGTTTCCCTTTCTTGAGGATCTGACATTATCTGCCACTTTCAGATCAGCTGAGACGAAAATCTCTAGTCATCGACTCAAGAAATTGACAATAATAGCTAATGGAAGAAGTGAAGATTATGCAACTCTGAAGTTCATGCATACCCGGCTCGAGCGCAGTGCGGGCCGTGCGACCGCACGGGGCCCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

138

Amino Acids

15.45

Weight (kDa)

8.85

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	383, 396
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	33, 193
AgsI	TTSAA	2 cut(s)	62, 77
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	3 cut(s)	214, 272, 320
AluI	AGCT	3 cut(s)	214, 272, 320
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	385, 403
ApaI	GGGCCC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	170, 378
AspS9I	GGNCC	3 cut(s)	385, 403, 404
AsuC2I	CCSGG	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	108, 288
Bme1390I	CCNGG	2 cut(s)	10, 367
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	385, 403, 404
BmiI	GGNNCC	2 cut(s)	404, 405
BmrFI	CCNGG	2 cut(s)	10, 367
BpuEI	CTTGAG	4 cut(s)	20, 227, 257, 284
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	8, 124
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	8, 124
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	387, 405
BsiEI	CGRYCG	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	387, 405
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	2 cut(s)	241, 266
BspACI	CCGC	2 cut(s)	383, 396
BspANI	GGCC	2 cut(s)	387, 405
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	404, 405
BspPI	GGATC	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	8, 124
BssMI	GATC	2 cut(s)	241, 266
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	170, 378
BstKTI	GATC	2 cut(s)	244, 269
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	241, 266
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 384, 389
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	8, 365
BstSLI	GKGCMC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	387, 405
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	385
CfoI	GCGC	2 cut(s)	170, 378
Cfr13I	GGNCC	3 cut(s)	385, 403, 404
Csp6I	GTAC	2 cut(s)	32, 192
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	7 cut(s)	13, 214, 272, 320, 370, 387, 405
CviKI_1	RGCY	7 cut(s)	13, 214, 272, 320, 370, 387, 405
CviQI	GTAC	2 cut(s)	32, 192
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	243, 268
DpnII	GATC	2 cut(s)	241, 266
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	1 cut(s)	361
FaiI	YATR	4 cut(s)	92, 342, 359, 363
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	1 cut(s)	357
FauI	CCCGC	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	407
FspBI	CTAG	2 cut(s)	108, 288
GlaI	GCGC	2 cut(s)	169, 377
HaeIII	GGCC	2 cut(s)	387, 405
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	2 cut(s)	170, 378
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	2 cut(s)	168, 376
HinP1I	GCGC	2 cut(s)	168, 376
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	177, 246, 266, 351
Hpy188III	TCNNGA	4 cut(s)	47, 206, 236, 301
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	344, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 384, 389
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	2 cut(s)	168, 376
Kzo9I	GATC	2 cut(s)	241, 266
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	2 cut(s)	22, 380
MaeI	CTAG	2 cut(s)	108, 288
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	243, 268
MboI	GATC	2 cut(s)	241, 266
MboII	GAAGA	4 cut(s)	65, 163, 339, 347
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	2 cut(s)	95, 305
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	175, 183, 232
Mph1103I	ATGCAT	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	10, 367
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	367, 384, 389
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	2 cut(s)	241, 266
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	2 cut(s)	404, 405
NsiI	ATGCAT	1 cut(s)	363
PaeR7I	CTCGAG	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	404, 405
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	3 cut(s)	385, 403, 404
PspXI	VCTCGAGB	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	33, 193
RsaNI	GTAC	2 cut(s)	32, 192
Sau3AI	GATC	2 cut(s)	241, 266
Sau96I	GGNCC	3 cut(s)	385, 403, 404
SchI	GAGTC	1 cut(s)	291
ScrFI	CCNGG	2 cut(s)	10, 367
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	7 cut(s)	60, 120, 126, 186, 216, 274, 322
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	5 cut(s)	35, 206, 236, 299, 371
SmoI	CTYRAG	5 cut(s)	35, 206, 236, 299, 371
Sse9I	AATT	2 cut(s)	95, 305
SsiI	CCGC	2 cut(s)	383, 396
SspMI	CTAG	2 cut(s)	108, 288
StyD4I	CCNGG	2 cut(s)	8, 365
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	295, 372
TasI	AATT	2 cut(s)	95, 305
TatI	WGTACW	1 cut(s)	31
TscAI	CASTG	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	95
XhoI	CTCGAG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	108, 288
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.