Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Forward (+)

25824934 .. 25825203

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32741.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATCGGATCTCCCAGTTGCCAGAGCTCGTCATGGAACAGATTCTCTTTCACTACTTGCCAGCTTCTGATGCAATCCGCATGAGCTTTGCATCGAGGACATGGCAGAGACTGTGGCAGACAATACCTGTCACTGAGAATTTTGATTTTGATATGCCTCGAGATGACCAGGAAGATCAGCCAATGGAGGAGTTTGTAACTTCCGTCGACGATTCTTTTAGAGTACTCCATGAACATGAAGTTCGAAAATATATCATTCCTTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

90

Amino Acids

10.7

Weight (kDa)

4.51

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	2 cut(s)	12, 17
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	28, 65, 87
AluI	AGCT	3 cut(s)	28, 65, 87
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	12, 17
AlwNI	CAGNNNCTG	2 cut(s)	68, 112
Ama87I	CYCGRG	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	61, 101
BmuI	ACTGGG	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	4, 9, 175
BspACI	CCGC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	127
BspPI	GGATC	2 cut(s)	12, 17
BspT104I	TTCGAA	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	16
BssMI	GATC	3 cut(s)	4, 9, 175
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	135
BstKTI	GATC	3 cut(s)	7, 12, 178
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	4, 9, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	2 cut(s)	68, 112
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	5 cut(s)	34, 82, 102, 230, 236
CviJI	RGCY	4 cut(s)	28, 65, 87, 181
CviKI_1	RGCY	4 cut(s)	28, 65, 87, 181
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	3 cut(s)	6, 11, 177
DpnII	GATC	3 cut(s)	4, 9, 175
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	5 cut(s)	37, 85, 105, 233, 239
FaiI	YATR	7 cut(s)	35, 83, 103, 155, 231, 237, 252
FatI	CATG	5 cut(s)	33, 81, 101, 229, 235
FblI	GTMKAC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	37, 85, 105, 233, 239
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	43, 212
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	9, 70
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	209, 212
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	74, 92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	5 cut(s)	37, 85, 105, 233, 239
Kzo9I	GATC	3 cut(s)	4, 9, 175
LpnPI	CCDG	6 cut(s)	29, 36, 75, 141, 155, 182
LweI	GCATC	2 cut(s)	61, 101
MaeIII	GTNAC	2 cut(s)	130, 196
MalI	GATC	3 cut(s)	6, 11, 177
MboI	GATC	3 cut(s)	4, 9, 175
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	3 cut(s)	90, 168, 181
MroXI	GAANNNNTTC	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	3 cut(s)	4, 9, 175
NlaIII	CATG	5 cut(s)	37, 85, 105, 233, 239
NmuCI	GTSAC	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	43, 212
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PstNI	CAGNNNCTG	2 cut(s)	68, 112
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	4, 9, 175
ScaI	AGTACT	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	4 cut(s)	30, 67, 89, 130
SfaNI	GCATC	2 cut(s)	61, 101
Sfr274I	CTCGAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	244
SgrDI	CGTCGACG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	79
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	4 cut(s)	95, 160, 207, 244
TasI	AATT	1 cut(s)	139
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	43, 212
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	246, 252
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.