Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001483.1

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

149942 .. 151454

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001483.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atgatagtggacgacatggatcggatctccaacttgccggaacccatcatggagcagattctctttcgctacttgccggcatctgattcaatccgcatgagctttgcatcgaggacatggcagagactatggaaatcactacctgtctctgatgattttgattttgatgtgagacgagatggccggctggacgagtcaatggaggagattgtaacttccgtcgacgaatccttgagaatactccatgaacatgaagttcgaaaacatatcattccttcttttagtttgagagggagatttagcgatgagattcaaacttctcatgtagaccgttggatgaagctggtcaccaaacattatgtcaaaaggcttgttttctacaactatggaatacgatggtacaagtttccttctgctgcttttgatgttgggtcgttagttgcattgagtttatataagtgcgttttgaagagagactcgattcaaagaaaaatgagctcgttttgttgcctaaaggaactggaattgacttttgtcgatttgaatgggctaatcatcggggacctcctttccagatgcccttcgcttgagaagttgaaactcaacgactgtgaaggggtaaactatcttgagcttgttgattttcccaaactaaagaagttttgtctctatcgagttaaatctaaagctttcaagtacaagattgaagcagccagtcttcaagctcttagttattctgacacagaaaatccattggaccttgaagcagtctgttgcagtaatttagagaagttgaaactacacacctacatcgttactaaccaaaatatcaacgagttcattcgtaaatttccatgtcttgcgaagttggtcttggaggccgagtggctaaaatcagcagatgatgagatcaaaatttcgagcaatcaactgaaatcatttacactaaacggagagaccgacaacaagaacatcaacattgatgccccaaaccttgtttcttaccatcatgaggctgaccaaattccgccctcgttttcatacaattcattgaagctagaaacacataatcacgttttctataatgtttccagtgttcacactaaatggtttcttagattgcgagaatatcttgcgaagttcaaacctgcaacagcatcgtacttaagattgtactctcctcgcaaagcgatcaatatttcttttagaaaattacagcaagaaaaaattcctcctgtgccgaaaatcacaaaattggttctaaacactagctcatcatattcattagattatacagctcttattgatggcctactttggagttgtcatccgaccacgatatgggttccgcggcaggacactgaggataacagcaattttataaaggtattagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

465

Amino Acids

54.13

Weight (kDa)

8.49

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1382
Acc36I	ACCTGC	1 cut(s)	1156
AccB7I	CCANNNNNTGG	1 cut(s)	1341
AccI	GTMKAC	2 cut(s)	222, 327
AccII	CGCG	1 cut(s)	1351
AciI	CCGC	4 cut(s)	94, 1028, 1349, 1351
AclWI	GGATC	2 cut(s)	27, 32
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	4 cut(s)	848, 915, 1023, 1227
AfaI	GTAC	4 cut(s)	401, 698, 1163, 1175
AfiI	CCNNNNNNNGG	2 cut(s)	1012, 1341
AflII	CTTAAG	1 cut(s)	1165
AjuI	GAANNNNNNNTTGG	4 cut(s)	857, 889, 982, 1014
AluBI	AGCT	9 cut(s)	102, 343, 498, 634, 689, 725, 1057, 1272, 1298
AluI	AGCT	9 cut(s)	102, 343, 498, 634, 689, 725, 1057, 1272, 1298
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	6 cut(s)	118, 151, 166, 468, 671, 950
AlwI	GGATC	2 cut(s)	27, 32
AoxI	GGCC	3 cut(s)	181, 879, 1309
ApeKI	GCWGC	2 cut(s)	416, 710
ApoI	RAATTY	4 cut(s)	848, 915, 1023, 1227
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	1227
AspS9I	GGNCC	2 cut(s)	562, 757
AsuHPI	GGTGA	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	562, 757
BanII	GRGCYC	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	403, 722
BccI	CCATC	5 cut(s)	53, 173, 390, 1014, 1301
BcgI	CGANNNNNNTGC	2 cut(s)	1140, 1174
BcoDI	GTCTC	6 cut(s)	118, 151, 166, 468, 671, 950
BfaI	CTAG	2 cut(s)	1058, 1269
BfrI	CTTAAG	1 cut(s)	1165
BfuAI	ACCTGC	1 cut(s)	1156
BisI	GCNGC	3 cut(s)	417, 711, 1352
BlsI	GCNGC	3 cut(s)	418, 712, 1353
Bme18I	GGWCC	2 cut(s)	562, 757
BmgT120I	GGNCC	2 cut(s)	562, 757
BmiI	GGNNCC	3 cut(s)	42, 563, 1347
BmsI	GCATC	5 cut(s)	89, 116, 566, 973, 1166
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	710
Bpu14I	TTCGAA	1 cut(s)	259
BpuEI	CTTGAG	3 cut(s)	253, 608, 650
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	1 cut(s)	1349
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	1012, 1341
Bse118I	RCCGGY	2 cut(s)	76, 183
Bse1I	ACTGG	3 cut(s)	525, 714, 1092
BseDI	CCNNGG	1 cut(s)	1349
BseGI	GGATG	2 cut(s)	342, 1327
BseLI	CCNNNNNNNGG	2 cut(s)	1012, 1341
BseMII	CTCAG	1 cut(s)	1353
BseNI	ACTGG	3 cut(s)	525, 714, 1092
BseRI	GAGGAG	2 cut(s)	218, 1170
BseXI	GCAGC	2 cut(s)	403, 722
Bsh1236I	CGCG	1 cut(s)	1351
BshFI	GGCC	3 cut(s)	183, 881, 1311
BsiHKAI	GWGCWC	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	38, 77, 184
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	2 cut(s)	1012, 1341
BsmAI	GTCTC	6 cut(s)	118, 151, 166, 468, 671, 950
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	183, 881, 1311
Bso31I	GGTCTC	1 cut(s)	950
Bsp119I	TTCGAA	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	19, 24, 909, 1191
BspACI	CCGC	4 cut(s)	94, 1028, 1349, 1351
BspANI	GGCC	3 cut(s)	183, 881, 1311
BspCNI	CTCAG	1 cut(s)	1354
BspFNI	CGCG	1 cut(s)	1351
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	42, 563, 1347
BspMI	ACCTGC	1 cut(s)	1156
BspPI	GGATC	2 cut(s)	27, 32
BspT104I	TTCGAA	1 cut(s)	259
BspTI	CTTAAG	1 cut(s)	1165
BspTNI	GGTCTC	1 cut(s)	950
BsrFI	RCCGGY	2 cut(s)	76, 183
BsrI	ACTGG	3 cut(s)	525, 714, 1092
BssAI	RCCGGY	2 cut(s)	76, 183
BssECI	CCNNGG	1 cut(s)	1349
BssMI	GATC	4 cut(s)	19, 24, 909, 1191
Bst4CI	ACNGT	2 cut(s)	332, 611
Bst6I	CTCTTC	1 cut(s)	464
BstAFI	CTTAAG	1 cut(s)	1165
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	78, 185
BstDEI	CTNAG	3 cut(s)	728, 1115, 1362
BstDSI	CCRYGG	1 cut(s)	1349
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	342, 1327
BstFNI	CGCG	1 cut(s)	1351
BstKTI	GATC	4 cut(s)	22, 27, 912, 1194
BstMAI	GTCTC	6 cut(s)	118, 151, 166, 468, 671, 950
BstMBI	GATC	4 cut(s)	19, 24, 909, 1191
BstPAI	GACNNNNGTC	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	1351
BstV1I	GCAGC	2 cut(s)	403, 722
BstV2I	GAAGAC	1 cut(s)	710
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	183, 881, 1311
BtgI	CCRYGG	1 cut(s)	1349
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	342, 1327
BtsIMutI	CAGTG	2 cut(s)	1099, 1359
BveI	ACCTGC	1 cut(s)	1156
Cac8I	GCNNGC	2 cut(s)	78, 185
CciI	TCATGA	1 cut(s)	1009
Cfr10I	RCCGGY	2 cut(s)	76, 183
Cfr13I	GGNCC	2 cut(s)	562, 757
Cfr42I	CCGCGG	1 cut(s)	1352
Csp6I	GTAC	4 cut(s)	400, 697, 1162, 1174
CviAII	CATG	9 cut(s)	16, 49, 97, 117, 245, 251, 323, 855, 1010
CviQI	GTAC	4 cut(s)	400, 697, 1162, 1174
DdeI	CTNAG	3 cut(s)	728, 1115, 1362
DpnI	GATC	4 cut(s)	21, 26, 911, 1193
DpnII	GATC	4 cut(s)	19, 24, 909, 1191
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	1 cut(s)	1017
Ecl136II	GAGCTC	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	2 cut(s)	562, 757
Eco53kI	GAGCTC	1 cut(s)	498
Eco91I	GGTNACC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	562
EcoO65I	GGTNACC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	500
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	9 cut(s)	19, 52, 100, 120, 248, 254, 326, 858, 1013
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	9 cut(s)	15, 48, 96, 116, 244, 250, 322, 854, 1009
FblI	GTMKAC	2 cut(s)	222, 327
Fnu4HI	GCNGC	3 cut(s)	417, 711, 1352
FokI	GGATG	2 cut(s)	349, 1314
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	3 cut(s)	417, 711, 1352
FspBI	CTAG	2 cut(s)	1058, 1269
GluI	GCNGC	3 cut(s)	417, 711, 1352
HaeIII	GGCC	3 cut(s)	183, 881, 1311
HapII	CCGG	3 cut(s)	38, 77, 184
Hin1II	CATG	9 cut(s)	19, 52, 100, 120, 248, 254, 326, 858, 1013
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	7 cut(s)	58, 86, 194, 227, 310, 476, 481
HpaII	CCGG	3 cut(s)	38, 77, 184
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	5 cut(s)	10, 223, 328, 622, 1099
Hpy188I	TCNGA	5 cut(s)	24, 85, 151, 739, 1332
Hpy188III	TCNNGA	3 cut(s)	573, 629, 1010
Hpy8I	GTNNAC	5 cut(s)	10, 223, 328, 622, 1099
Hpy99I	CGWCG	2 cut(s)	224, 227
HpyAV	CCTTC	4 cut(s)	285, 420, 591, 608
HpyCH4III	ACNGT	2 cut(s)	332, 611
HpyCH4IV	ACGT	1 cut(s)	1074
HpyCH4V	TGCA	4 cut(s)	107, 443, 777, 1151
HpyF3I	CTNAG	3 cut(s)	728, 1115, 1362
HpySE526I	ACGT	1 cut(s)	1074
Hsp92II	CATG	9 cut(s)	19, 52, 100, 120, 248, 254, 326, 858, 1013
KroI	GCCGGC	2 cut(s)	76, 183
KroNI	GCCGGC	2 cut(s)	78, 185
KspI	CCGCGG	1 cut(s)	1352
Kzo9I	GATC	4 cut(s)	19, 24, 909, 1191
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	403, 722
LweI	GCATC	5 cut(s)	89, 116, 566, 973, 1166
MaeI	CTAG	2 cut(s)	1058, 1269
MaeII	ACGT	1 cut(s)	1074
MaeIII	GTNAC	3 cut(s)	211, 346, 814
MalI	GATC	4 cut(s)	21, 26, 911, 1193
MboI	GATC	4 cut(s)	19, 24, 909, 1191
MboII	GAAGA	2 cut(s)	481, 710
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	203, 470
MmeI	TCCRAC	3 cut(s)	54, 314, 1355
MroNI	GCCGGC	2 cut(s)	76, 183
MroXI	GAANNNNTTC	1 cut(s)	1227
MseI	TTAA	2 cut(s)	678, 1166
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	1351
MspCI	CTTAAG	1 cut(s)	1165
MspI	CCGG	3 cut(s)	38, 77, 184
MvnI	CGCG	1 cut(s)	1351
NaeI	GCCGGC	2 cut(s)	78, 185
NdeII	GATC	4 cut(s)	19, 24, 909, 1191
NgoMIV	GCCGGC	2 cut(s)	76, 183
NlaIII	CATG	9 cut(s)	19, 52, 100, 120, 248, 254, 326, 858, 1013
NlaIV	GGNNCC	3 cut(s)	42, 563, 1347
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	259
PagI	TCATGA	1 cut(s)	1009
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PdiI	GCCGGC	2 cut(s)	78, 185
PdmI	GAANNNNTTC	1 cut(s)	1227
PfeI	GAWTC	5 cut(s)	58, 86, 227, 310, 481
PflMI	CCANNNNNTGG	1 cut(s)	1341
PkrI	GCNGC	3 cut(s)	418, 712, 1353
PleI	GAGTC	2 cut(s)	202, 470
PpsI	GAGTC	2 cut(s)	202, 470
PpuMI	RGGWCCY	1 cut(s)	562
PshAI	GACNNNNGTC	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	1382
Psp124BI	GAGCTC	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	562
PspEI	GGTNACC	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	42, 563, 1347
PspPI	GGNCC	2 cut(s)	562, 757
PspPPI	RGGWCCY	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	4 cut(s)	401, 698, 1163, 1175
RsaNI	GTAC	4 cut(s)	400, 697, 1162, 1174
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	500
SacII	CCGCGG	1 cut(s)	1352
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	678, 1166
SatI	GCNGC	3 cut(s)	417, 711, 1352
Sau3AI	GATC	4 cut(s)	19, 24, 909, 1191
Sau96I	GGNCC	2 cut(s)	562, 757
SchI	GAGTC	2 cut(s)	203, 470
SduI	GDGCHC	1 cut(s)	500
SfaNI	GCATC	5 cut(s)	89, 116, 566, 973, 1166
Sfr303I	CCGCGG	1 cut(s)	1352
SfuI	TTCGAA	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	1352
SgrDI	CGTCGACG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	562, 757
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	4 cut(s)	232, 587, 629, 1165
SmoI	CTYRAG	4 cut(s)	232, 587, 629, 1165
SsiI	CCGC	4 cut(s)	94, 1028, 1349, 1351
SspI	AATATT	1 cut(s)	1198
SspMI	CTAG	2 cut(s)	1058, 1269
SstI	GAGCTC	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	332, 611
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	7 cut(s)	110, 222, 259, 479, 537, 673, 920
TaqII	GACCGA	1 cut(s)	974
TatI	WGTACW	2 cut(s)	696, 1173
TauI	GCSGC	1 cut(s)	1354
TfiI	GAWTC	5 cut(s)	58, 86, 227, 310, 481
Tru1I	TTAA	2 cut(s)	678, 1166
Tru9I	TTAA	2 cut(s)	678, 1166
TscAI	CASTG	2 cut(s)	1099, 1366
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	416, 710
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	7 cut(s)	261, 267, 353, 829, 1029, 1038, 1272
TspGWI	ACGGA	2 cut(s)	208, 966
TspRI	CASTG	2 cut(s)	1099, 1366
Van91I	CCANNNNNTGG	1 cut(s)	1341
Vha464I	CTTAAG	1 cut(s)	1165
VpaK11BI	GGWCC	2 cut(s)	562, 757
XapI	RAATTY	4 cut(s)	848, 915, 1023, 1227
XmiI	GTMKAC	2 cut(s)	222, 327
XmnI	GAANNNNTTC	1 cut(s)	1227
XspI	CTAG	2 cut(s)	1058, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.