Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Forward (+)

25514061 .. 25515188

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTCACAATAAAGATTCCTCAAGCAACAAATGCAATCCGTATGAGCTTCTCGTCCAGGCACTGGCAGGGCCTATGGAACTCTGGGTGGAACTCATTACCAGTTACTCGTATTAATTTAGAGGACTCGACCTCAATGGAAGATTCGTTTAGAAGCAGTAGTCTCCTCGAACATGAAGGTCAGAAAAGAATCGTTCACTTCTCACTCGGAGAACCAGTCGCCGAGAAGATGACACACTCTGATGTTGACGGCTGGATGAAGATGGTCACACAATATTACGTGACAGAGTTAAAGCTCTATATGCCACATAACTATATGAATTACAACTTTCCTCCGGCTAGTTTTGATGTTGGGTCCCTGGTTGTACTGAGCTTAAAAGATTGTATTTTGGACCCAGCCTTAATCCAAAAGGATACAATCTTCTGTCGCCTGGAATCCCTCAGCTTATGGTACGTCAATTTGAATGGGTTAGCAGGGGAGCTCTTTTCTAGATGCCCTTTGCTGGAGAGTTTATATTTGACACACTGTGAAAACATACTACATGTTGAACTTTGTGATGTTCCAAATCTCAAGAATATTGTTGTAGTCGAGCAGATACATAATGATGCGCGTGTACCTCAAACCTTCAACATTCAAGCACCCAATCTTGAATCTCTTCTTTATCAGGAGAGTGCATGGGAAAAGCCATTGAACCTTGAAGAAGTATGTTGCAGAAATCTAAAGAAGTTGGACGTAAGTCTTGAAGGCTCTACGATTACCAACCAATACGTCGATGTCGTTGTTTGGACGTTTCCTTTCCTCGAAGACTTGGTCTTGGTTGCCTACAAATTTGGATGGGCACCTGATGATGAGATCAAACTTTCAAGTCGTTCACTCACGAAATTAAAGATAGTTGCAAAAACAGCTCTCCTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

306

Amino Acids

34.9

Weight (kDa)

5.39

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	65 - 274	2.5e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	82 - 226	1.8e-13	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	838
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccII	CGCG	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	827
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	366, 452, 615
AfiI	CCNNNNNNNGG	2 cut(s)	63, 502
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	9 cut(s)	463, 548, 628, 635, 650, 691, 698, 743, 864
AjnI	CCWGG	3 cut(s)	56, 357, 429
AluBI	AGCT	6 cut(s)	48, 295, 372, 444, 481, 905
AluI	AGCT	6 cut(s)	48, 295, 372, 444, 481, 905
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	827
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	3 cut(s)	70, 354, 391
AvaII	GGWCC	2 cut(s)	354, 391
BaeGI	GKGCMC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	838
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	810
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	256, 828
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	3 cut(s)	58, 359, 431
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	339, 489
BfuI	GTATCC	1 cut(s)	406
Bme1390I	CCNGG	3 cut(s)	58, 359, 431
Bme18I	GGWCC	2 cut(s)	354, 391
BmgT120I	GGNCC	3 cut(s)	70, 354, 391
BmiI	GGNNCC	4 cut(s)	355, 356, 393, 840
BmrFI	CCNGG	3 cut(s)	58, 359, 431
BmsI	GCATC	2 cut(s)	482, 595
BoxI	GACNNNNGTC	1 cut(s)	735
BpiI	GAAGAC	1 cut(s)	810
BpmI	CTGGAG	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	6, 554
BsaAI	YACGTR	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 502
Bse1I	ACTGG	3 cut(s)	68, 101, 215
BseBI	CCWGG	3 cut(s)	58, 359, 431
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	261, 839
BseLI	CCNNNNNNNGG	2 cut(s)	63, 502
BseMII	CTCAG	2 cut(s)	359, 454
BseNI	ACTGG	3 cut(s)	68, 101, 215
BseRI	GAGGAG	2 cut(s)	155, 899
BseSI	GKGCMC	1 cut(s)	841
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	838
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	63, 502
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	483, 841
Bsp143I	GATC	1 cut(s)	852
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	360, 453
BspFNI	CGCG	1 cut(s)	610
BspLI	GGNNCC	4 cut(s)	355, 356, 393, 840
BspT107I	GGYRCC	1 cut(s)	838
BsrI	ACTGG	3 cut(s)	68, 101, 215
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	852
Bst2UI	CCWGG	3 cut(s)	58, 359, 431
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	368, 440
BstF5I	GGATG	2 cut(s)	261, 839
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	1 cut(s)	855
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	852
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 301, 902
BstNI	CCWGG	3 cut(s)	58, 359, 431
BstNSI	RCATGY	1 cut(s)	545
BstPAI	GACNNNNGTC	1 cut(s)	735
BstSCI	CCNGG	3 cut(s)	56, 357, 429
BstSLI	GKGCMC	1 cut(s)	841
BstUI	CGCG	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	810
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	261, 839
BtsIMutI	CAGTG	2 cut(s)	61, 523
CaiI	CAGNNNCTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	610
Cfr13I	GGNCC	3 cut(s)	70, 354, 391
Csp6I	GTAC	3 cut(s)	365, 451, 614
CviAII	CATG	3 cut(s)	173, 542, 675
CviQI	GTAC	3 cut(s)	365, 451, 614
DdeI	CTNAG	2 cut(s)	368, 440
DpnI	GATC	1 cut(s)	854
DpnII	GATC	1 cut(s)	852
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	354, 391
Eco53kI	GAGCTC	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	2 cut(s)	70, 354
EcoRII	CCWGG	3 cut(s)	56, 357, 429
EcoT38I	GRGCYC	1 cut(s)	483
FaeI	CATG	3 cut(s)	176, 545, 678
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	3 cut(s)	172, 541, 674
FokI	GGATG	2 cut(s)	268, 846
FriOI	GRGCYC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	339, 489
GlaI	GCGC	1 cut(s)	609
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	3 cut(s)	176, 545, 678
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	6 cut(s)	16, 125, 143, 189, 434, 650
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	196, 247, 614, 872
Hpy188I	TCNGA	3 cut(s)	183, 209, 241
Hpy188III	TCNNGA	6 cut(s)	489, 571, 647, 665, 740, 877
Hpy8I	GTNNAC	4 cut(s)	196, 247, 614, 872
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	3 cut(s)	170, 634, 737
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	5 cut(s)	279, 453, 732, 768, 788
HpyCH4V	TGCA	4 cut(s)	35, 674, 711, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 301, 902
HpyF3I	CTNAG	2 cut(s)	368, 440
HpySE526I	ACGT	5 cut(s)	279, 453, 732, 768, 788
Hsp92II	CATG	3 cut(s)	176, 545, 678
HspAI	GCGC	1 cut(s)	608
KflI	GGGWCCC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	852
LmnI	GCTCC	1 cut(s)	478
LweI	GCATC	2 cut(s)	482, 595
MaeI	CTAG	2 cut(s)	339, 489
MaeII	ACGT	5 cut(s)	279, 453, 732, 768, 788
MaeIII	GTNAC	4 cut(s)	4, 103, 265, 280
MalI	GATC	1 cut(s)	854
MboI	GATC	1 cut(s)	852
MboII	GAAGA	7 cut(s)	152, 238, 271, 412, 647, 710, 815
MhlI	GDGCHC	2 cut(s)	483, 841
MluCI	AATT	5 cut(s)	115, 319, 457, 827, 881
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	8 cut(s)	30, 115, 142, 176, 342, 449, 627, 809
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	5 cut(s)	114, 290, 374, 401, 884
MslI	CAYNNNNRTG	2 cut(s)	240, 603
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	3 cut(s)	58, 359, 431
MvaI	CCWGG	3 cut(s)	58, 359, 431
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	3 cut(s)	32, 301, 902
NdeII	GATC	1 cut(s)	852
NlaIII	CATG	3 cut(s)	176, 545, 678
NlaIV	GGNNCC	4 cut(s)	355, 356, 393, 840
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	3 cut(s)	4, 265, 280
NspI	RCATGY	1 cut(s)	545
PciI	ACATGT	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	5 cut(s)	16, 143, 189, 434, 650
PflFI	GACNNNGTC	1 cut(s)	809
PflMI	CCANNNNNTGG	1 cut(s)	63
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	354
PscI	ACATGT	1 cut(s)	541
PshAI	GACNNNNGTC	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	3 cut(s)	56, 357, 429
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	3 cut(s)	56, 357, 429
PspN4I	GGNNCC	4 cut(s)	355, 356, 393, 840
PspPI	GGNCC	3 cut(s)	70, 354, 391
PspPPI	RGGWCCY	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	63
PsyI	GACNNNGTC	1 cut(s)	809
RsaI	GTAC	3 cut(s)	366, 452, 615
RsaNI	GTAC	3 cut(s)	365, 451, 614
RseI	CAYNNNNRTG	2 cut(s)	240, 603
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	5 cut(s)	114, 290, 374, 401, 884
Sau3AI	GATC	1 cut(s)	852
Sau96I	GGNCC	3 cut(s)	70, 354, 391
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	58, 359, 431
SduI	GDGCHC	2 cut(s)	483, 841
SfaNI	GCATC	2 cut(s)	482, 595
SinI	GGWCC	2 cut(s)	354, 391
SmiMI	CAYNNNNRTG	2 cut(s)	240, 603
SmlI	CTYRAG	2 cut(s)	21, 569
SmoI	CTYRAG	2 cut(s)	21, 569
Sse9I	AATT	5 cut(s)	115, 319, 457, 827, 881
SspI	AATATT	2 cut(s)	275, 577
SspMI	CTAG	2 cut(s)	339, 489
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	56, 357, 429
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	5 cut(s)	282, 456, 735, 771, 791
TaqI	TCGA	5 cut(s)	128, 168, 588, 771, 801
TasI	AATT	5 cut(s)	115, 319, 457, 827, 881
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	5 cut(s)	16, 143, 189, 434, 650
Tru1I	TTAA	5 cut(s)	114, 290, 374, 401, 884
Tru9I	TTAA	5 cut(s)	114, 290, 374, 401, 884
TscAI	CASTG	2 cut(s)	68, 530
TseFI	GTSAC	3 cut(s)	4, 265, 280
Tsp45I	GTSAC	3 cut(s)	4, 265, 280
TspDTI	ATGAA	3 cut(s)	189, 272, 332
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	68, 530
Tth111I	GACNNNGTC	1 cut(s)	809
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	354, 391
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	1 cut(s)	827
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	2 cut(s)	339, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.