Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002727.1

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

3683 .. 4891

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggatcggatatcgcagttgccggaagcccttatgctggaaatcctcctccggttgcctccgatagattcagtccgtctgaaaatcacgtcgaggacatggaactcactcccggtctcttatttttgtcctcctatatttagtagtagggatgaacattctgtctctagtattgatcaatccttgagaaaactccatgaactgcatccgaaaaacatatttcactgctttaccctgcatgaatacctttccgacgaaagtaatgtttcccatgtctacaaatggataaagttggccaccaaacactgtctgaatcagctagatctccacatctatggtcagcaaggagagtactacagctttcctatattcgattttgattttggttcattaattgtgttgaggttccgttgcattctggtaaaaccattctttccaggggagcaaaagaggtttaactgcctaaaagagctgcgtttacctgttgatttaaccagattatcagtagtggatgtgctttctatgtgtccttcccttgagatcttagatctcagatactgttacaacataaactatcttgaactctgtgactttcctaatctaaagcaggtttaccttacaccaagatactatagggacatttatcgttacaagattgaagcagccaatctcgaaactctccatcttgaaacttaccactcaaattgtcaatgttacccgacttgtcaatgctcccagccagtggaccttgaagtagtcaggtgcagtaatctaaaggagttgatcgttatgactcccggtagtaccatgacccaccaatatgttgaaaaacttactcgcaagtttccccatcttgaggtgttaagcttagaagcctctttcggatcacccaagctgttgatatcaagtcatcagctcaggaaactgacattacatttaggaagtaatcctttagaggaggtgaatctacatactccaaatcttgctttttgcacatacagcaacaaaaaaatccaccttcggcggtttttgttggattctaccaagcttgaagaactgaatgttcgcctagataaaagcgattttcgtaaaggtcttgacttctttattactttgcaaaagagatttctagaattcgctgcacaagaacgcttgactgtttttataaacggttcagaagtaagtcgtctttacttgatgttgatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

402

Amino Acids

47.23

Weight (kDa)

8.13

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
Acc36I	ACCTGC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	742
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	1024
AclWI	GGATC	2 cut(s)	12, 892
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	1133
AfaI	GTAC	2 cut(s)	353, 805
AfiI	CCNNNNNNNGG	3 cut(s)	37, 742, 856
AgsI	TTSAA	6 cut(s)	581, 659, 689, 752, 827, 1052
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	7 cut(s)	319, 360, 472, 867, 895, 916, 1048
AluI	AGCT	7 cut(s)	319, 360, 472, 867, 895, 916, 1048
Alw26I	GTCTC	2 cut(s)	121, 169
AlwI	GGATC	2 cut(s)	12, 892
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	472, 662, 1139
ApoI	RAATTY	1 cut(s)	1133
AseI	ATTAAT	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	745
AsuC2I	CCSGG	2 cut(s)	113, 798
AsuHPI	GGTGA	2 cut(s)	879, 973
AvaII	GGWCC	1 cut(s)	745
BalI	TGGCCA	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	459, 674, 1126
BccI	CCATC	2 cut(s)	690, 858
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	113, 798
BcoDI	GTCTC	2 cut(s)	121, 169
BfaI	CTAG	4 cut(s)	168, 320, 1070, 1130
BfmI	CTRYAG	2 cut(s)	355, 631
BfuAI	ACCTGC	1 cut(s)	598
BglII	AGATCT	3 cut(s)	322, 540, 547
BisI	GCNGC	3 cut(s)	473, 663, 1140
BlsI	GCNGC	3 cut(s)	474, 664, 1141
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	3 cut(s)	113, 438, 798
Bme18I	GGWCC	1 cut(s)	745
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	3 cut(s)	113, 438, 798
BmsI	GCATC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	917
BpuEI	CTTGAG	3 cut(s)	205, 557, 875
BpuMI	CCSGG	2 cut(s)	113, 798
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 742, 856
Bse1I	ACTGG	1 cut(s)	740
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	157, 205, 517
BseLI	CCNNNNNNNGG	3 cut(s)	37, 742, 856
BseMII	CTCAG	2 cut(s)	565, 931
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	2 cut(s)	38, 971
BseXI	GCAGC	3 cut(s)	459, 674, 1126
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	2 cut(s)	784, 1125
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	23, 52, 113, 798
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	3 cut(s)	37, 742, 856
BsmAI	GTCTC	2 cut(s)	121, 169
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	121
Bsp143I	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
BspACI	CCGC	1 cut(s)	1024
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	564, 930
BspLI	GGNNCC	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	12, 892
BspTNI	GGTCTC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	4 cut(s)	308, 560, 1159, 1172
BstDEI	CTNAG	4 cut(s)	544, 551, 868, 917
BstF5I	GGATG	3 cut(s)	157, 205, 517
BstKTI	GATC	7 cut(s)	7, 178, 325, 543, 550, 786, 887
BstMAI	GTCTC	2 cut(s)	121, 169
BstMBI	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
BstMWI	GCNNNNNNNGC	1 cut(s)	999
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	111, 436, 796
BstSFI	CTRYAG	2 cut(s)	355, 631
BstV1I	GCAGC	3 cut(s)	459, 674, 1126
BstX2I	RGATCY	3 cut(s)	322, 540, 547
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	3 cut(s)	322, 540, 547
BsuRI	GGCC	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	157, 205, 517
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	223, 304, 747
BveI	ACCTGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	352, 804
CspCI	CAANNNNNGTGG	2 cut(s)	686, 721
CviAII	CATG	5 cut(s)	99, 197, 239, 272, 808
CviQI	GTAC	2 cut(s)	352, 804
DdeI	CTNAG	4 cut(s)	544, 551, 868, 917
DpnI	GATC	7 cut(s)	6, 177, 324, 542, 549, 785, 886
DpnII	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
EaeI	YGGCCR	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	121
Eco32I	GATATC	2 cut(s)	12, 903
Eco47I	GGWCC	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	2 cut(s)	12, 903
FaeI	CATG	5 cut(s)	102, 200, 242, 275, 811
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	5 cut(s)	98, 196, 238, 271, 807
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	473, 663, 1140
FokI	GGATG	3 cut(s)	164, 192, 524
Fsp4HI	GCNGC	3 cut(s)	473, 663, 1140
FspBI	CTAG	4 cut(s)	168, 320, 1070, 1130
GluI	GCNGC	3 cut(s)	473, 663, 1140
GsaI	CCCAGC	1 cut(s)	739
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	4 cut(s)	23, 52, 113, 798
Hin1II	CATG	5 cut(s)	102, 200, 242, 275, 811
HindIII	AAGCTT	2 cut(s)	865, 1046
HinfI	GANTC	5 cut(s)	68, 313, 793, 964, 1037
HpaII	CCGG	4 cut(s)	23, 52, 113, 798
HphI	GGTGA	2 cut(s)	879, 973
Hpy166II	GTNNAC	4 cut(s)	277, 479, 613, 745
Hpy188I	TCNGA	9 cut(s)	9, 63, 81, 210, 253, 312, 554, 884, 1177
Hpy188III	TCNNGA	7 cut(s)	578, 671, 686, 854, 919, 1097, 1130
Hpy8I	GTNNAC	4 cut(s)	277, 479, 613, 745
Hpy99I	CGWCG	2 cut(s)	94, 257
HpyAV	CCTTC	2 cut(s)	540, 1028
HpyCH4III	ACNGT	4 cut(s)	308, 560, 1159, 1172
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	7 cut(s)	205, 238, 414, 765, 993, 1117, 1142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	999
HpyF3I	CTNAG	4 cut(s)	544, 551, 868, 917
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	5 cut(s)	102, 200, 242, 275, 811
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
LmnI	GCTCC	2 cut(s)	442, 737
Lsp1109I	GCAGC	3 cut(s)	459, 674, 1126
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	4 cut(s)	168, 320, 1070, 1130
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	4 cut(s)	560, 587, 647, 713
MalI	GATC	7 cut(s)	6, 177, 324, 542, 549, 785, 886
MboI	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
MboII	GAAGA	1 cut(s)	1064
MflI	RGATCY	3 cut(s)	322, 540, 547
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	3 cut(s)	393, 703, 1133
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	787
MmeI	TCCRAC	2 cut(s)	276, 1014
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	4 cut(s)	392, 456, 491, 863
MslI	CAYNNNNRTG	2 cut(s)	333, 819
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	4 cut(s)	23, 52, 113, 798
MspR9I	CCNGG	3 cut(s)	113, 438, 798
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	999
NciI	CCSGG	2 cut(s)	113, 798
NdeII	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
NlaIII	CATG	5 cut(s)	102, 200, 242, 275, 811
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	4 cut(s)	68, 313, 964, 1037
PflMI	CCANNNNNTGG	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	474, 664, 1141
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PshBI	ATTAAT	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	1166
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	3 cut(s)	322, 540, 547
RsaI	GTAC	2 cut(s)	353, 805
RsaNI	GTAC	2 cut(s)	352, 804
RseI	CAYNNNNRTG	2 cut(s)	333, 819
SaqAI	TTAA	4 cut(s)	392, 456, 491, 863
SatI	GCNGC	3 cut(s)	473, 663, 1140
Sau3AI	GATC	7 cut(s)	4, 175, 322, 540, 547, 783, 884
Sau96I	GGNCC	1 cut(s)	745
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	3 cut(s)	113, 438, 798
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	2 cut(s)	355, 631
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	333, 819
SmlI	CTYRAG	3 cut(s)	184, 536, 854
SmoI	CTYRAG	3 cut(s)	184, 536, 854
Sse9I	AATT	3 cut(s)	393, 703, 1133
SsiI	CCGC	1 cut(s)	1024
SspMI	CTAG	4 cut(s)	168, 320, 1070, 1130
StyD4I	CCNGG	3 cut(s)	111, 436, 796
TaaI	ACNGT	4 cut(s)	308, 560, 1159, 1172
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	92, 372, 672
TasI	AATT	3 cut(s)	393, 703, 1133
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	4 cut(s)	68, 313, 964, 1037
Tru1I	TTAA	4 cut(s)	392, 456, 491, 863
Tru9I	TTAA	4 cut(s)	392, 456, 491, 863
TscAI	CASTG	3 cut(s)	230, 311, 747
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	472, 662, 1139
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	4 cut(s)	168, 213, 255, 378
TspGWI	ACGGA	2 cut(s)	65, 398
TspRI	CASTG	3 cut(s)	230, 311, 747
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	745
VspI	ATTAAT	1 cut(s)	392
XapI	RAATTY	1 cut(s)	1133
XbaI	TCTAGA	1 cut(s)	1129
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	4 cut(s)	168, 320, 1070, 1130
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.